Wall clock time and date at job start Tue Mar 31 2020 03:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00094 * 2 1 4 4 O 1.20819 * 120.00043 * 0.27529 * 3 2 1 5 5 C 1.50706 * 119.99687 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.51164 * 55.10147 * 5 3 2 7 7 C 1.53293 * 109.51232 * 294.99581 * 5 3 2 8 8 N 1.47147 * 108.38484 * 187.77519 * 7 5 3 9 9 C 1.34777 * 120.98716 * 230.56089 * 8 7 5 10 10 O 1.21586 * 119.99351 * 355.00894 * 9 8 7 11 11 N 1.34769 * 120.00393 * 175.01163 * 9 8 7 12 12 C 1.46501 * 120.00250 * 185.07941 * 11 9 8 13 13 C 1.53004 * 109.47109 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.46854 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00125 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99983 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47060 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46849 * 119.99686 * 18 16 14 21 21 H 1.48498 * 109.47212 * 239.99741 * 18 16 14 22 22 C 1.47161 * 118.03374 * 50.53733 * 8 7 5 23 23 C 1.53297 * 108.38400 * 309.46596 * 22 8 7 24 24 H 1.09000 * 109.51192 * 292.37636 * 23 22 8 25 25 C 1.52998 * 109.50856 * 172.27852 * 23 22 8 26 26 O 1.42957 * 109.22365 * 52.29954 * 23 22 8 27 27 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 300.00239 * 1 2 3 29 29 H 1.09004 * 109.46918 * 60.00485 * 1 2 3 30 30 H 1.09004 * 109.68459 * 307.50136 * 7 5 3 31 31 H 1.08999 * 109.67782 * 68.05393 * 7 5 3 32 32 H 0.97011 * 120.00102 * 5.08383 * 11 9 8 33 33 H 1.08994 * 109.47242 * 300.00141 * 12 11 9 34 34 H 1.09006 * 109.46686 * 60.00108 * 12 11 9 35 35 H 1.09003 * 109.46899 * 299.99890 * 13 12 11 36 36 H 1.08990 * 109.47049 * 60.00269 * 13 12 11 37 37 H 0.97003 * 120.00069 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.67772 * 69.18973 * 22 8 7 39 39 H 1.08996 * 109.68069 * 189.74252 * 22 8 7 40 40 H 1.08994 * 109.47329 * 59.99626 * 25 23 22 41 41 H 1.09001 * 109.46765 * 180.02562 * 25 23 22 42 42 H 1.09003 * 109.47135 * 299.99405 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5664 1.2748 0.0006 6 1 3.9610 0.7066 -0.8418 7 6 4.1091 0.6921 1.3105 8 7 5.5567 0.9497 1.3685 9 6 6.4279 -0.0428 1.6372 10 8 6.0174 -1.1504 1.9253 11 7 7.7540 0.1924 1.5867 12 6 8.7010 -0.9104 1.7689 13 6 10.1313 -0.3765 1.6669 14 6 11.1054 -1.5110 1.8537 15 1 10.7409 -2.5126 2.0283 16 6 12.4620 -1.2703 1.8030 17 7 12.9059 -0.0506 1.5909 18 14 13.6696 -2.6765 2.0353 19 1 12.9214 -3.9400 2.2563 20 1 14.5152 -2.8084 0.8217 21 1 14.5321 -2.3990 3.2118 22 6 6.0251 2.3232 1.1238 23 6 5.3889 2.8265 -0.1770 24 1 5.7910 2.2645 -1.0200 25 6 5.7028 4.3130 -0.3575 26 8 3.9730 2.6408 -0.1111 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 3.6168 1.1707 2.1571 31 1 3.9260 -0.3821 1.3380 32 1 8.0814 1.0919 1.4296 33 1 8.5506 -1.3601 2.7503 34 1 8.5371 -1.6615 0.9961 35 1 10.2820 0.0734 0.6855 36 1 10.2948 0.3742 2.4398 37 1 13.8603 0.1188 1.5556 38 1 5.7257 2.9660 1.9516 39 1 7.1108 2.3291 1.0278 40 1 6.7826 4.4534 -0.4034 41 1 5.2498 4.6702 -1.2823 42 1 5.2989 4.8745 0.4850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338663145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:19 Heat of formation + Delta-G solvation = -150.217472 kcal Electronic energy + Delta-G solvation = -24807.165960 eV Core-core repulsion = 20981.158067 eV Total energy + Delta-G solvation = -3826.007893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.15414 -40.20225 -38.67127 -36.74265 -35.11184 -34.78367 -33.51425 -32.77441 -30.27965 -29.33407 -27.77497 -26.60754 -25.27966 -23.95057 -21.96340 -21.27151 -21.04576 -19.77703 -18.28610 -17.89029 -17.41877 -16.90027 -16.56009 -16.41283 -16.01602 -15.64646 -15.28819 -14.56403 -14.42524 -14.33657 -14.04381 -13.69105 -13.49424 -13.14147 -12.97257 -12.72221 -12.54960 -12.37014 -12.28221 -12.21861 -11.68149 -11.24714 -11.16969 -11.14286 -11.07888 -10.67758 -10.63161 -10.47493 -10.36361 -9.99144 -9.59851 -9.28691 -8.85190 -8.51209 -8.30344 -6.12283 -4.14856 1.76954 1.93885 2.60084 3.26860 3.34693 3.37897 3.39839 3.53030 4.04156 4.25017 4.36127 4.41533 4.48393 4.64139 4.75765 4.77456 4.80982 4.85866 5.06623 5.19003 5.23676 5.25223 5.38096 5.45623 5.52274 5.64288 5.86783 5.95097 6.11442 6.30374 6.34264 6.62652 6.71561 6.89015 6.97880 7.39283 7.50711 7.58346 7.86622 8.14984 8.27868 8.80280 8.91770 9.50230 10.99431 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.002862 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.615823 B = 9781.313511 C =10680.584451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.473 3.527 4 O -0.483 6.483 5 C 0.089 3.911 6 H 0.104 0.896 7 C 0.114 3.886 8 N -0.639 5.639 9 C 0.706 3.294 10 O -0.588 6.588 11 N -0.736 5.736 12 C 0.138 3.862 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.079 3.921 23 C 0.076 3.924 24 H 0.071 0.929 25 C -0.143 4.143 26 O -0.354 6.354 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.392 0.608 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.512 6.937 -4.589 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.313 3.687 4 O -0.368 6.368 5 C 0.029 3.971 6 H 0.121 0.879 7 C -0.011 4.011 8 N -0.378 5.378 9 C 0.407 3.593 10 O -0.466 6.466 11 N -0.391 5.391 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.045 4.045 23 C 0.018 3.982 24 H 0.089 0.911 25 C -0.201 4.201 26 O -0.274 6.274 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.961 6.622 -4.390 22.416 hybrid contribution 0.895 -0.270 0.009 0.935 sum -20.066 6.353 -4.381 21.498 Atomic orbital electron populations 1.23337 0.75499 1.04098 1.02737 1.86505 1.23913 1.32381 1.84085 1.22910 0.90629 0.81853 0.73268 1.90693 1.66505 1.36235 1.43367 1.21747 0.88206 0.86279 1.00913 0.87865 1.21842 0.80290 1.03857 0.95074 1.47263 1.05673 1.08232 1.76671 1.15895 0.81547 0.83543 0.78295 1.90899 1.77917 1.22319 1.55497 1.45711 1.03809 1.13287 1.76302 1.21654 0.88967 0.87275 1.00528 1.19329 0.88020 0.97341 0.97767 1.21078 0.90769 0.94492 1.49545 0.92131 1.24995 0.98527 0.95784 0.94992 1.69958 1.14199 1.19640 1.49535 0.86454 0.80962 0.82397 0.77748 1.19554 1.20942 1.20933 1.22444 1.00469 0.83330 0.98215 1.22635 0.80193 0.98490 0.96907 0.91062 1.21747 1.02389 0.92400 1.03551 1.88005 1.22800 1.21959 1.94590 0.87620 0.91624 0.91719 0.90538 0.86503 0.77189 0.92532 0.92671 0.95988 0.95954 0.92889 0.90123 0.88560 0.89988 0.91192 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.53 10.56 -39.26 -0.41 -3.94 16 3 C 0.47 5.49 7.29 36.01 0.26 5.75 16 4 O -0.48 -6.83 16.26 -25.45 -0.41 -7.24 16 5 C 0.09 0.98 3.30 -27.73 -0.09 0.89 16 6 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 7 C 0.11 1.36 5.89 -3.54 -0.02 1.34 16 8 N -0.64 -8.48 3.02 -178.00 -0.54 -9.02 16 9 C 0.71 12.17 8.31 -86.92 -0.72 11.45 16 10 O -0.59 -12.26 15.85 5.29 0.08 -12.18 16 11 N -0.74 -12.70 5.47 -65.22 -0.36 -13.06 16 12 C 0.14 2.89 5.62 -4.04 -0.02 2.87 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.08 0.81 5.92 -3.53 -0.02 0.79 16 23 C 0.08 0.73 3.40 -26.58 -0.09 0.64 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 C -0.14 -1.07 9.57 37.16 0.36 -0.72 16 26 O -0.35 -4.16 9.57 -55.11 -0.53 -4.69 16 27 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.12 1.50 7.12 -51.93 -0.37 1.13 16 32 H 0.39 5.81 5.98 -40.82 -0.24 5.57 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.91 5.66 -51.93 -0.29 0.61 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -34.02 353.15 -7.33 -41.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.37 Total: 0.79 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 0.16 Total: 11.54 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.16 Total: -47.03 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.27 Total: -28.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.02 -7.33 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338663145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.861 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds