Wall clock time and date at job start Tue Mar 31 2020 03:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00094 * 2 1 4 4 O 1.20819 * 120.00043 * 0.27529 * 3 2 1 5 5 C 1.50706 * 119.99687 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.51164 * 55.10147 * 5 3 2 7 7 C 1.53293 * 109.51232 * 294.99581 * 5 3 2 8 8 N 1.47147 * 108.38484 * 187.77519 * 7 5 3 9 9 C 1.34777 * 120.98716 * 230.56089 * 8 7 5 10 10 O 1.21586 * 119.99351 * 355.00894 * 9 8 7 11 11 N 1.34769 * 120.00393 * 175.01163 * 9 8 7 12 12 C 1.46501 * 120.00250 * 185.07941 * 11 9 8 13 13 C 1.53004 * 109.47109 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.46854 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00125 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99983 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47060 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46849 * 119.99686 * 18 16 14 21 21 H 1.48498 * 109.47212 * 239.99741 * 18 16 14 22 22 C 1.47161 * 118.03374 * 50.53733 * 8 7 5 23 23 C 1.53297 * 108.38400 * 309.46596 * 22 8 7 24 24 H 1.09000 * 109.51192 * 292.37636 * 23 22 8 25 25 C 1.52998 * 109.50856 * 172.27852 * 23 22 8 26 26 O 1.42957 * 109.22365 * 52.29954 * 23 22 8 27 27 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 300.00239 * 1 2 3 29 29 H 1.09004 * 109.46918 * 60.00485 * 1 2 3 30 30 H 1.09004 * 109.68459 * 307.50136 * 7 5 3 31 31 H 1.08999 * 109.67782 * 68.05393 * 7 5 3 32 32 H 0.97011 * 120.00102 * 5.08383 * 11 9 8 33 33 H 1.08994 * 109.47242 * 300.00141 * 12 11 9 34 34 H 1.09006 * 109.46686 * 60.00108 * 12 11 9 35 35 H 1.09003 * 109.46899 * 299.99890 * 13 12 11 36 36 H 1.08990 * 109.47049 * 60.00269 * 13 12 11 37 37 H 0.97003 * 120.00069 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.67772 * 69.18973 * 22 8 7 39 39 H 1.08996 * 109.68069 * 189.74252 * 22 8 7 40 40 H 1.08994 * 109.47329 * 59.99626 * 25 23 22 41 41 H 1.09001 * 109.46765 * 180.02562 * 25 23 22 42 42 H 1.09003 * 109.47135 * 299.99405 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5664 1.2748 0.0006 6 1 3.9610 0.7066 -0.8418 7 6 4.1091 0.6921 1.3105 8 7 5.5567 0.9497 1.3685 9 6 6.4279 -0.0428 1.6372 10 8 6.0174 -1.1504 1.9253 11 7 7.7540 0.1924 1.5867 12 6 8.7010 -0.9104 1.7689 13 6 10.1313 -0.3765 1.6669 14 6 11.1054 -1.5110 1.8537 15 1 10.7409 -2.5126 2.0283 16 6 12.4620 -1.2703 1.8030 17 7 12.9059 -0.0506 1.5909 18 14 13.6696 -2.6765 2.0353 19 1 12.9214 -3.9400 2.2563 20 1 14.5152 -2.8084 0.8217 21 1 14.5321 -2.3990 3.2118 22 6 6.0251 2.3232 1.1238 23 6 5.3889 2.8265 -0.1770 24 1 5.7910 2.2645 -1.0200 25 6 5.7028 4.3130 -0.3575 26 8 3.9730 2.6408 -0.1111 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 3.6168 1.1707 2.1571 31 1 3.9260 -0.3821 1.3380 32 1 8.0814 1.0919 1.4296 33 1 8.5506 -1.3601 2.7503 34 1 8.5371 -1.6615 0.9961 35 1 10.2820 0.0734 0.6855 36 1 10.2948 0.3742 2.4398 37 1 13.8603 0.1188 1.5556 38 1 5.7257 2.9660 1.9516 39 1 7.1108 2.3291 1.0278 40 1 6.7826 4.4534 -0.4034 41 1 5.2498 4.6702 -1.2823 42 1 5.2989 4.8745 0.4850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338663145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:17 Heat of formation + Delta-G solvation = -172.934415 kcal Electronic energy + Delta-G solvation = -24808.151040 eV Core-core repulsion = 20981.158067 eV Total energy + Delta-G solvation = -3826.992974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.11340 -41.29393 -39.76079 -37.62743 -36.71784 -35.95030 -34.89108 -34.19147 -31.70496 -30.56624 -28.52797 -27.51604 -26.82650 -25.27410 -22.92647 -22.78385 -22.11822 -21.03166 -19.45914 -18.80436 -18.51503 -18.28842 -17.78776 -17.32454 -17.19004 -16.86198 -16.50969 -16.28048 -15.60119 -15.44722 -15.29629 -14.99369 -14.43366 -14.31029 -14.25631 -13.87698 -13.56766 -13.31621 -13.15594 -12.98965 -12.96232 -12.94060 -12.50316 -12.46581 -12.24260 -12.06199 -11.88804 -11.70776 -11.64794 -11.42024 -11.34660 -11.14287 -10.59349 -10.19377 -9.60204 -8.22577 -6.32082 0.84340 1.15744 1.42029 1.42530 1.46316 1.57179 2.01655 2.41562 2.73171 2.84429 3.12793 3.34604 3.53644 3.63213 3.79090 3.96913 4.01961 4.25535 4.27414 4.32195 4.37069 4.46190 4.53145 4.53601 4.69060 4.69927 4.84267 4.88272 4.97693 5.12874 5.19065 5.29058 5.30543 5.50297 5.61385 5.72586 5.82398 5.83437 6.18757 6.53352 6.80844 6.86648 7.37164 7.44127 8.89449 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.002862 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.615823 B = 9781.313511 C =10680.584451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.479 3.521 4 O -0.512 6.512 5 C 0.093 3.907 6 H 0.114 0.886 7 C 0.115 3.885 8 N -0.631 5.631 9 C 0.706 3.294 10 O -0.627 6.627 11 N -0.730 5.730 12 C 0.159 3.841 13 C 0.024 3.976 14 C -0.544 4.544 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.963 3.037 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.278 1.278 22 C 0.075 3.925 23 C 0.075 3.925 24 H 0.075 0.925 25 C -0.139 4.139 26 O -0.368 6.368 27 H 0.135 0.865 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.405 0.595 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.011 0.989 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.701 7.016 -4.877 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.321 3.679 4 O -0.399 6.399 5 C 0.033 3.967 6 H 0.132 0.868 7 C -0.009 4.009 8 N -0.369 5.369 9 C 0.408 3.592 10 O -0.508 6.508 11 N -0.386 5.386 12 C 0.035 3.965 13 C -0.013 4.013 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.047 4.047 23 C 0.017 3.983 24 H 0.093 0.907 25 C -0.197 4.197 26 O -0.287 6.287 27 H 0.153 0.847 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.243 0.757 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.177 6.742 -4.692 22.714 hybrid contribution 0.870 -0.265 0.091 0.914 sum -20.307 6.478 -4.601 21.806 Atomic orbital electron populations 1.23664 0.73681 1.06135 1.02976 1.86504 1.25731 1.31474 1.83500 1.22962 0.90719 0.81843 0.72412 1.90679 1.67110 1.37196 1.44949 1.21709 0.88067 0.86304 1.00602 0.86830 1.21885 0.79430 1.03522 0.96060 1.47224 1.05716 1.08616 1.75346 1.15931 0.81571 0.83702 0.78023 1.90872 1.78520 1.24229 1.57196 1.45382 1.03641 1.13073 1.76550 1.21137 0.87971 0.87834 0.99549 1.19128 0.89511 0.96219 0.96477 1.21482 0.91860 0.95254 1.49643 0.92309 1.25829 1.00351 0.98278 0.94601 1.70050 1.14812 1.21445 1.50224 0.85426 0.78560 0.79370 0.77872 1.19007 1.20274 1.20361 1.22703 1.01148 0.81600 0.99292 1.22786 0.79158 0.99922 0.96388 0.90750 1.21768 1.03539 0.90707 1.03659 1.88014 1.24017 1.22109 1.94560 0.84730 0.91513 0.91422 0.89774 0.87428 0.75661 0.93743 0.93437 0.97038 0.97290 0.92570 0.88812 0.87627 0.88274 0.91061 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.78 10.56 -51.42 -0.54 -7.32 16 3 C 0.48 10.75 7.29 71.24 0.52 11.27 16 4 O -0.51 -14.19 16.26 28.40 0.46 -13.73 16 5 C 0.09 1.97 3.30 29.95 0.10 2.07 16 6 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 7 C 0.12 2.65 5.89 86.35 0.51 3.16 16 8 N -0.63 -16.05 3.02 -835.34 -2.52 -18.57 16 9 C 0.71 23.95 8.31 179.06 1.49 25.44 16 10 O -0.63 -26.16 15.85 -3.99 -0.06 -26.22 16 11 N -0.73 -24.78 5.47 -478.54 -2.62 -27.40 16 12 C 0.16 6.68 5.62 86.38 0.49 7.16 16 13 C 0.02 1.18 5.09 29.85 0.15 1.33 16 14 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.93 -53.05 13.29 21.45 0.28 -52.77 16 18 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.08 1.40 5.92 86.35 0.51 1.92 16 23 C 0.08 1.30 3.40 30.69 0.10 1.41 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 C -0.14 -1.79 9.57 71.98 0.69 -1.10 16 26 O -0.37 -8.12 9.57 -129.98 -1.24 -9.36 16 27 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.11 2.72 7.12 -2.39 -0.02 2.71 16 32 H 0.41 11.57 5.98 -92.70 -0.55 11.02 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.78 5.66 -2.39 -0.01 1.76 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.05 353.15 2.70 -69.34 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.47 Total: 15.46 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 6.45 Total: 25.64 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -4.86 Total: -98.73 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -1.39 Total: -56.63 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.05 2.70 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338663145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.590 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds