Wall clock time and date at job start Tue Mar 31 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99724 * 2 1 4 4 O 1.20826 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99893 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.51095 * 305.10311 * 5 3 2 7 7 C 1.53710 * 109.48715 * 65.36102 * 5 3 2 8 8 N 1.47148 * 108.16186 * 172.39892 * 7 5 3 9 9 C 1.34781 * 120.98117 * 129.43761 * 8 7 5 10 10 O 1.21589 * 120.00014 * 184.92857 * 9 8 7 11 11 N 1.34773 * 119.99861 * 4.92528 * 9 8 7 12 12 C 1.46502 * 119.99857 * 175.02699 * 11 9 8 13 13 C 1.53005 * 109.46968 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.46868 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00420 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99841 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99878 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00047 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47272 * 89.99792 * 18 16 14 20 20 H 1.48496 * 109.47371 * 209.99932 * 18 16 14 21 21 H 1.48506 * 109.47246 * 329.99819 * 18 16 14 22 22 C 1.47151 * 118.03738 * 309.15584 * 8 7 5 23 23 C 1.53299 * 108.38103 * 50.79120 * 22 8 7 24 24 H 1.08997 * 109.51069 * 187.76981 * 23 22 8 25 25 C 1.53001 * 109.51319 * 67.61862 * 23 22 8 26 26 O 1.42962 * 109.22344 * 307.69492 * 23 22 8 27 27 H 1.09002 * 109.47240 * 300.00095 * 1 2 3 28 28 H 1.09005 * 109.47010 * 60.00058 * 1 2 3 29 29 H 1.08998 * 109.46817 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.83484 * 52.72186 * 7 5 3 31 31 H 1.09000 * 109.75048 * 292.02841 * 7 5 3 32 32 H 0.96996 * 119.99975 * 355.02319 * 11 9 8 33 33 H 1.08998 * 109.47124 * 59.99913 * 12 11 9 34 34 H 1.08996 * 109.47008 * 299.99390 * 12 11 9 35 35 H 1.08996 * 109.46841 * 299.99594 * 13 12 11 36 36 H 1.08998 * 109.47186 * 60.00053 * 13 12 11 37 37 H 0.97005 * 119.99646 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.68177 * 170.50608 * 22 8 7 39 39 H 1.08999 * 109.68618 * 291.02757 * 22 8 7 40 40 H 1.08995 * 109.47145 * 60.00019 * 25 23 22 41 41 H 1.08996 * 109.47111 * 179.97438 * 25 23 22 42 42 H 1.09003 * 109.47079 * 299.99729 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9611 0.7038 0.8397 7 6 4.1094 0.6988 -1.3180 8 7 5.5575 0.9556 -1.3685 9 6 6.4288 -0.0358 -1.6417 10 8 7.6251 0.1752 -1.5909 11 7 5.9739 -1.2609 -1.9713 12 6 6.9159 -2.3081 -2.3740 13 6 6.1462 -3.5917 -2.6919 14 6 7.1152 -4.6687 -3.1068 15 1 8.1740 -4.4586 -3.1408 16 6 6.6498 -5.9220 -3.4440 17 7 5.3604 -6.1776 -3.4031 18 14 7.8509 -7.2573 -3.9577 19 1 8.2907 -8.0154 -2.7589 20 1 7.1859 -8.1813 -4.9111 21 1 9.0311 -6.6367 -4.6114 22 6 6.0257 2.3279 -1.1179 23 6 5.3888 2.8258 0.1846 24 1 5.6116 3.8845 0.3173 25 6 5.9524 2.0320 1.3650 26 8 3.9729 2.6405 0.1171 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6209 1.1840 -2.1632 31 1 3.9256 -0.3750 -1.3540 32 1 5.0229 -1.4492 -1.9417 33 1 7.6177 -2.4974 -1.5618 34 1 7.4632 -1.9837 -3.2590 35 1 5.5992 -3.9159 -1.8067 36 1 5.4441 -3.4026 -3.5039 37 1 5.0331 -7.0595 -3.6400 38 1 7.1114 2.3334 -1.0211 39 1 5.7275 2.9741 -1.9435 40 1 7.0324 2.1702 1.4132 41 1 5.4994 2.3869 2.2907 42 1 5.7269 0.9739 1.2321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338663146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:22 Heat of formation + Delta-G solvation = -147.374917 kcal Electronic energy + Delta-G solvation = -25226.075712 eV Core-core repulsion = 21400.191081 eV Total energy + Delta-G solvation = -3825.884631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.22749 -40.21605 -38.72624 -36.70423 -35.05439 -34.81911 -33.19619 -32.62935 -30.17033 -29.49608 -27.86619 -26.62514 -25.03680 -24.49996 -22.16685 -21.09907 -20.67415 -19.49445 -18.51281 -17.98445 -17.08047 -16.97141 -16.58659 -16.36429 -15.76951 -15.63402 -14.99565 -14.92111 -14.52903 -14.22902 -14.17313 -13.74354 -13.55877 -13.29766 -13.07061 -12.64423 -12.31762 -12.29540 -12.25510 -12.20382 -11.66041 -11.20177 -11.10690 -11.08685 -11.05670 -10.64789 -10.62568 -10.44484 -10.32688 -9.98664 -9.58617 -9.29085 -8.83619 -8.49275 -8.28589 -6.10837 -4.13522 1.80014 1.98725 2.61423 3.28703 3.35026 3.37919 3.39282 3.60855 4.04302 4.19810 4.37116 4.41246 4.52624 4.60689 4.76617 4.83823 4.87675 4.93166 4.94817 5.26531 5.27760 5.29090 5.39344 5.42298 5.60941 5.62884 5.91515 6.00021 6.13442 6.35018 6.35343 6.61638 6.72655 6.90035 6.98898 7.42131 7.52189 7.60151 7.87840 8.15929 8.29035 8.81246 8.92805 9.51395 11.00788 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003581 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.777713 B = 7816.306846 C = 9301.821029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.470 3.530 4 O -0.483 6.483 5 C 0.085 3.915 6 H 0.108 0.892 7 C 0.093 3.907 8 N -0.636 5.636 9 C 0.706 3.294 10 O -0.588 6.588 11 N -0.737 5.737 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.099 3.901 23 C 0.076 3.924 24 H 0.123 0.877 25 C -0.185 4.185 26 O -0.351 6.351 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.392 0.608 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 16.279 8.297 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.311 3.689 4 O -0.368 6.368 5 C 0.025 3.975 6 H 0.125 0.875 7 C -0.031 4.031 8 N -0.376 5.376 9 C 0.408 3.592 10 O -0.466 6.466 11 N -0.392 5.392 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.025 4.025 23 C 0.018 3.982 24 H 0.141 0.859 25 C -0.242 4.242 26 O -0.269 6.269 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.228 0.772 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.375 16.697 8.264 20.037 hybrid contribution -0.054 -1.043 -0.264 1.077 sum -7.428 15.654 8.000 19.085 Atomic orbital electron populations 1.23359 0.75307 1.04292 1.02696 1.86503 1.24078 1.32230 1.84011 1.22942 0.90660 0.81949 0.73378 1.90694 1.66521 1.36272 1.43339 1.21787 0.88160 0.87079 1.00483 0.87471 1.22163 0.82167 1.02571 0.96237 1.47241 1.04893 1.08893 1.76528 1.15892 0.84731 0.80544 0.78042 1.90891 1.13500 1.82146 1.60090 1.45731 1.11416 1.10502 1.71557 1.21645 0.91478 0.86589 0.98675 1.19328 0.96027 0.89782 0.97332 1.21038 0.93540 0.95600 1.45812 0.92212 1.24984 0.95225 0.98632 0.95370 1.69954 1.12642 1.22132 1.48552 0.86516 0.81084 0.81493 0.78481 1.20560 1.21185 1.19718 1.22189 1.01959 0.81547 0.96788 1.22806 0.79449 1.01392 0.94567 0.85935 1.22394 1.02527 1.01245 0.98058 1.88068 1.22851 1.21712 1.94312 0.91750 0.91582 0.87434 0.89857 0.87792 0.77200 0.92564 0.92705 0.95917 0.95959 0.92851 0.87326 0.90739 0.90571 0.91585 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.63 10.56 -39.26 -0.41 -4.04 16 3 C 0.47 5.48 7.29 36.01 0.26 5.74 16 4 O -0.48 -6.91 16.26 -25.45 -0.41 -7.32 16 5 C 0.09 0.92 2.93 -27.51 -0.08 0.84 16 6 H 0.11 1.06 6.25 -51.93 -0.32 0.73 16 7 C 0.09 1.02 5.87 -3.32 -0.02 1.00 16 8 N -0.64 -8.22 2.53 -177.75 -0.45 -8.67 16 9 C 0.71 11.98 8.31 -86.92 -0.72 11.25 16 10 O -0.59 -12.00 15.82 5.29 0.08 -11.91 16 11 N -0.74 -12.73 5.47 -65.22 -0.36 -13.09 16 12 C 0.14 2.90 5.62 -4.04 -0.02 2.88 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.10 1.07 6.03 -3.53 -0.02 1.05 16 23 C 0.08 0.71 3.93 -26.58 -0.10 0.60 16 24 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 25 C -0.18 -1.71 8.81 37.16 0.33 -1.38 16 26 O -0.35 -4.03 9.76 -55.10 -0.54 -4.57 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.10 1.07 5.77 -51.93 -0.30 0.77 16 32 H 0.39 5.92 6.03 -40.82 -0.25 5.67 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.11 1.27 7.06 -51.93 -0.37 0.91 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -33.76 348.48 -7.16 -40.92 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.17 Total: 1.81 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 0.13 Total: 10.51 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.07 Total: -46.73 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.28 Total: -27.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.76 -7.16 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338663146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.457 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds