Wall clock time and date at job start Tue Mar 31 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99724 * 2 1 4 4 O 1.20826 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99893 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.51095 * 305.10311 * 5 3 2 7 7 C 1.53710 * 109.48715 * 65.36102 * 5 3 2 8 8 N 1.47148 * 108.16186 * 172.39892 * 7 5 3 9 9 C 1.34781 * 120.98117 * 129.43761 * 8 7 5 10 10 O 1.21589 * 120.00014 * 184.92857 * 9 8 7 11 11 N 1.34773 * 119.99861 * 4.92528 * 9 8 7 12 12 C 1.46502 * 119.99857 * 175.02699 * 11 9 8 13 13 C 1.53005 * 109.46968 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.46868 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00420 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99841 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99878 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00047 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47272 * 89.99792 * 18 16 14 20 20 H 1.48496 * 109.47371 * 209.99932 * 18 16 14 21 21 H 1.48506 * 109.47246 * 329.99819 * 18 16 14 22 22 C 1.47151 * 118.03738 * 309.15584 * 8 7 5 23 23 C 1.53299 * 108.38103 * 50.79120 * 22 8 7 24 24 H 1.08997 * 109.51069 * 187.76981 * 23 22 8 25 25 C 1.53001 * 109.51319 * 67.61862 * 23 22 8 26 26 O 1.42962 * 109.22344 * 307.69492 * 23 22 8 27 27 H 1.09002 * 109.47240 * 300.00095 * 1 2 3 28 28 H 1.09005 * 109.47010 * 60.00058 * 1 2 3 29 29 H 1.08998 * 109.46817 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.83484 * 52.72186 * 7 5 3 31 31 H 1.09000 * 109.75048 * 292.02841 * 7 5 3 32 32 H 0.96996 * 119.99975 * 355.02319 * 11 9 8 33 33 H 1.08998 * 109.47124 * 59.99913 * 12 11 9 34 34 H 1.08996 * 109.47008 * 299.99390 * 12 11 9 35 35 H 1.08996 * 109.46841 * 299.99594 * 13 12 11 36 36 H 1.08998 * 109.47186 * 60.00053 * 13 12 11 37 37 H 0.97005 * 119.99646 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.68177 * 170.50608 * 22 8 7 39 39 H 1.08999 * 109.68618 * 291.02757 * 22 8 7 40 40 H 1.08995 * 109.47145 * 60.00019 * 25 23 22 41 41 H 1.08996 * 109.47111 * 179.97438 * 25 23 22 42 42 H 1.09003 * 109.47079 * 299.99729 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9611 0.7038 0.8397 7 6 4.1094 0.6988 -1.3180 8 7 5.5575 0.9556 -1.3685 9 6 6.4288 -0.0358 -1.6417 10 8 7.6251 0.1752 -1.5909 11 7 5.9739 -1.2609 -1.9713 12 6 6.9159 -2.3081 -2.3740 13 6 6.1462 -3.5917 -2.6919 14 6 7.1152 -4.6687 -3.1068 15 1 8.1740 -4.4586 -3.1408 16 6 6.6498 -5.9220 -3.4440 17 7 5.3604 -6.1776 -3.4031 18 14 7.8509 -7.2573 -3.9577 19 1 8.2907 -8.0154 -2.7589 20 1 7.1859 -8.1813 -4.9111 21 1 9.0311 -6.6367 -4.6114 22 6 6.0257 2.3279 -1.1179 23 6 5.3888 2.8258 0.1846 24 1 5.6116 3.8845 0.3173 25 6 5.9524 2.0320 1.3650 26 8 3.9729 2.6405 0.1171 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6209 1.1840 -2.1632 31 1 3.9256 -0.3750 -1.3540 32 1 5.0229 -1.4492 -1.9417 33 1 7.6177 -2.4974 -1.5618 34 1 7.4632 -1.9837 -3.2590 35 1 5.5992 -3.9159 -1.8067 36 1 5.4441 -3.4026 -3.5039 37 1 5.0331 -7.0595 -3.6400 38 1 7.1114 2.3334 -1.0211 39 1 5.7275 2.9741 -1.9435 40 1 7.0324 2.1702 1.4132 41 1 5.4994 2.3869 2.2907 42 1 5.7269 0.9739 1.2321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338663146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:22 Heat of formation + Delta-G solvation = -169.652085 kcal Electronic energy + Delta-G solvation = -25227.041722 eV Core-core repulsion = 21400.191081 eV Total energy + Delta-G solvation = -3826.850641 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18642 -41.27549 -39.83157 -37.60598 -36.67416 -35.96631 -34.83545 -33.80658 -31.57476 -30.75730 -28.57927 -27.78876 -26.26722 -25.91850 -23.29724 -22.66987 -21.78936 -20.55734 -19.62446 -18.95182 -18.49636 -18.01076 -17.83831 -17.46278 -16.84975 -16.83925 -16.49167 -16.01785 -15.75505 -15.48983 -15.31798 -15.07876 -14.56558 -14.43683 -14.26005 -14.12803 -13.50160 -13.37228 -13.03452 -13.00565 -12.95363 -12.91440 -12.51680 -12.45931 -12.23013 -11.94056 -11.86487 -11.72109 -11.59433 -11.40309 -11.30489 -11.13272 -10.58088 -10.17939 -9.55754 -8.21627 -6.31433 0.88301 1.19696 1.42841 1.44273 1.47561 1.56295 2.04233 2.42056 2.78155 2.85253 3.13646 3.30997 3.56674 3.66353 3.77991 3.97298 3.99672 4.20367 4.28689 4.34129 4.41533 4.43240 4.53638 4.55643 4.66985 4.73185 4.79443 4.87540 4.89332 5.15700 5.19204 5.27947 5.31639 5.51286 5.61915 5.73359 5.81528 5.84789 6.19296 6.55332 6.81271 6.87319 7.37774 7.46533 8.90210 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003581 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.777713 B = 7816.306846 C = 9301.821029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.476 3.524 4 O -0.513 6.513 5 C 0.089 3.911 6 H 0.117 0.883 7 C 0.093 3.907 8 N -0.627 5.627 9 C 0.708 3.292 10 O -0.624 6.624 11 N -0.733 5.733 12 C 0.160 3.840 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.094 3.906 23 C 0.081 3.919 24 H 0.152 0.848 25 C -0.182 4.182 26 O -0.363 6.363 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.404 0.596 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 16.607 8.549 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.318 3.682 4 O -0.400 6.400 5 C 0.029 3.971 6 H 0.134 0.866 7 C -0.031 4.031 8 N -0.365 5.365 9 C 0.409 3.591 10 O -0.505 6.505 11 N -0.390 5.390 12 C 0.036 3.964 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.028 4.028 23 C 0.023 3.977 24 H 0.169 0.831 25 C -0.240 4.240 26 O -0.282 6.282 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.241 0.759 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.519 17.049 8.530 20.493 hybrid contribution -0.094 -1.106 -0.317 1.155 sum -7.612 15.942 8.213 19.482 Atomic orbital electron populations 1.23652 0.73768 1.06040 1.02990 1.86502 1.25648 1.31495 1.83490 1.23053 0.90859 0.81842 0.72461 1.90681 1.67168 1.37231 1.44937 1.21774 0.87750 0.87129 1.00494 0.86571 1.22286 0.80740 1.03156 0.96941 1.47193 1.05324 1.08807 1.75170 1.15914 0.84643 0.80747 0.77778 1.90866 1.15262 1.82765 1.61641 1.45426 1.11462 1.10253 1.71828 1.21119 0.91235 0.86159 0.97901 1.19130 0.95416 0.90794 0.96056 1.21456 0.94096 0.96800 1.46054 0.92274 1.25821 0.96932 1.00920 0.95259 1.70052 1.14305 1.22870 1.49267 0.85482 0.78933 0.78562 0.78294 1.19825 1.20625 1.19102 1.22410 1.01707 0.80366 0.98349 1.22950 0.78335 1.02910 0.93480 0.83101 1.22374 1.02818 1.00145 0.98618 1.88072 1.23892 1.21916 1.94286 0.91392 0.91438 0.85000 0.88845 0.87275 0.75872 0.93533 0.93642 0.97187 0.97289 0.92582 0.88154 0.89331 0.90307 0.90413 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.87 10.56 -51.42 -0.54 -7.41 16 3 C 0.48 10.55 7.29 71.24 0.52 11.07 16 4 O -0.51 -14.20 16.26 28.37 0.46 -13.74 16 5 C 0.09 1.78 2.93 30.09 0.09 1.87 16 6 H 0.12 2.14 6.25 -2.39 -0.01 2.12 16 7 C 0.09 1.89 5.87 86.49 0.51 2.40 16 8 N -0.63 -15.50 2.53 -834.52 -2.11 -17.62 16 9 C 0.71 23.65 8.31 179.05 1.49 25.14 16 10 O -0.62 -25.44 15.82 -4.00 -0.06 -25.50 16 11 N -0.73 -25.15 5.47 -478.53 -2.62 -27.76 16 12 C 0.16 6.75 5.62 86.38 0.49 7.23 16 13 C 0.02 1.16 5.09 29.85 0.15 1.31 16 14 C -0.55 -29.93 9.11 25.60 0.23 -29.69 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 16 C 0.01 0.53 5.46 84.66 0.46 0.99 16 17 N -0.93 -53.26 13.29 21.45 0.28 -52.97 16 18 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 C 0.09 1.90 6.03 86.36 0.52 2.42 16 23 C 0.08 1.34 3.93 30.69 0.12 1.46 16 24 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 25 C -0.18 -3.07 8.81 71.98 0.63 -2.44 16 26 O -0.36 -7.66 9.76 -129.98 -1.27 -8.93 16 27 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 28 H 0.07 0.92 8.13 -2.38 -0.02 0.90 16 29 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.11 2.10 5.77 -2.39 -0.01 2.09 16 32 H 0.40 11.95 6.03 -92.71 -0.56 11.39 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 38 H 0.10 2.25 7.06 -2.39 -0.02 2.23 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 0.94 6.11 -2.39 -0.01 0.93 16 Total: -1.00 -71.46 348.48 3.05 -68.41 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.48 Total: 17.22 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 6.41 Total: 23.34 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.44 Total: -98.36 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.41 Total: -55.58 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.46 3.05 -68.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338663146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.246 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds