Wall clock time and date at job start Tue Mar 31 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 O 1.42891 * 109.47458 * 120.00340 * 2 1 3 5 5 C 1.42903 * 114.00351 * 270.00079 * 4 2 1 6 6 C 1.52991 * 109.47498 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.27505 * 54.30121 * 6 5 4 8 8 C 1.54949 * 110.30948 * 176.38708 * 6 5 4 9 9 C 1.55417 * 100.89179 * 155.28617 * 8 6 5 10 10 C 1.54377 * 102.31044 * 325.99144 * 9 8 6 11 11 O 1.43236 * 107.58870 * 21.28767 * 10 9 8 12 12 C 1.50702 * 109.47102 * 240.00320 * 2 1 3 13 13 O 1.21283 * 120.00262 * 245.00044 * 12 2 1 14 14 N 1.34777 * 119.99928 * 64.71949 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 O 1.21297 * 119.99707 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00262 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99935 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31403 * 119.99982 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00036 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47041 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46896 * 120.00177 * 23 21 19 26 26 H 1.48502 * 109.47328 * 240.00601 * 23 21 19 27 27 H 1.09003 * 109.46916 * 299.99553 * 1 2 3 28 28 H 1.08998 * 109.47766 * 59.99612 * 1 2 3 29 29 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46489 * 300.00058 * 5 4 2 31 31 H 1.08997 * 109.46943 * 59.99229 * 5 4 2 32 32 H 1.09002 * 111.12733 * 273.27685 * 8 6 5 33 33 H 1.08998 * 111.12574 * 37.44474 * 8 6 5 34 34 H 1.09004 * 110.88370 * 207.75296 * 9 8 6 35 35 H 1.09007 * 110.93172 * 84.25625 * 9 8 6 36 36 H 1.08992 * 109.83500 * 261.77014 * 10 9 8 37 37 H 1.09002 * 109.90396 * 140.83777 * 10 9 8 38 38 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 39 39 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 40 40 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 41 41 H 0.96996 * 120.00282 * 0.02562 * 18 16 15 42 42 H 0.97003 * 120.00258 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 2.2001 0.1828 2.2941 6 6 2.7080 -0.6409 3.4790 7 1 3.6005 -1.1990 3.1962 8 6 3.0112 0.2828 4.6856 9 6 2.8596 -0.7167 5.8660 10 6 1.7356 -1.6492 5.3655 11 8 1.6840 -1.5375 3.9384 12 6 2.0323 -0.7103 -1.2305 13 8 2.6529 -1.7466 -1.1217 14 7 1.7869 -0.1970 -2.4523 15 6 2.2700 -0.8906 -3.6488 16 6 1.8671 -0.1149 -4.8763 17 8 1.2386 0.9163 -4.7629 18 7 2.2051 -0.5669 -6.1002 19 6 1.8390 0.1391 -7.2169 20 1 1.2801 1.0577 -7.1159 21 6 2.1879 -0.3266 -8.4788 22 7 2.8683 -1.4440 -8.6017 23 14 1.6896 0.6358 -10.0003 24 1 0.9366 1.8494 -9.5938 25 1 2.9056 1.0370 -10.7524 26 1 0.8310 -0.2137 -10.8643 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9320 0.9512 2.0449 31 1 1.2538 0.6546 2.5588 32 1 4.0253 0.6789 4.6320 33 1 2.2801 1.0881 4.7573 34 1 2.5577 -0.1994 6.7768 35 1 3.7831 -1.2733 6.0261 36 1 0.7820 -1.3426 5.7951 37 1 1.9544 -2.6789 5.6481 38 1 1.2906 0.6318 -2.5395 39 1 3.3565 -0.9692 -3.6095 40 1 1.8349 -1.8892 -3.6905 41 1 2.7074 -1.3917 -6.1911 42 1 3.1122 -1.7690 -9.4826 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343509664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:44 Heat of formation + Delta-G solvation = -171.042398 kcal Electronic energy + Delta-G solvation = -23858.540242 eV Core-core repulsion = 20031.629312 eV Total energy + Delta-G solvation = -3826.910930 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03507 -39.58856 -38.30539 -37.32142 -34.45766 -33.71198 -32.58645 -32.06927 -31.37374 -30.32213 -27.64289 -25.88189 -24.78418 -23.53355 -22.02192 -21.58399 -20.11317 -19.59943 -18.16458 -17.52880 -17.38422 -16.79935 -16.16865 -15.68723 -15.60886 -15.16915 -15.08460 -14.73250 -14.53373 -14.14633 -14.01379 -13.64189 -13.54769 -13.30117 -12.69407 -12.51751 -12.33545 -12.20188 -12.12241 -11.88215 -11.69972 -11.64417 -11.55751 -11.36952 -11.14973 -11.13532 -10.41513 -10.33143 -10.00392 -9.75807 -9.65602 -9.39179 -8.79478 -8.64356 -8.11067 -6.52182 -3.94249 2.80114 2.88316 3.09834 3.22123 3.28755 3.47420 3.73095 3.77660 4.06525 4.11152 4.44447 4.54218 4.70919 4.79528 4.84967 4.86543 4.89646 4.93449 5.05925 5.12501 5.16500 5.18027 5.27917 5.37703 5.45432 5.51776 5.59134 5.62004 5.76455 5.91618 5.96497 6.04680 6.06793 6.65508 6.74247 6.97808 7.45525 7.80677 7.91460 8.42759 8.47201 9.03806 9.38559 9.86170 10.64721 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.051989 B = 0.002116 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.448843 B =13230.562137 C =13410.904513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.348 6.348 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.368 6.368 12 C 0.512 3.488 13 O -0.527 6.527 14 N -0.706 5.706 15 C 0.110 3.890 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 3.429 25.213 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.103 0.897 4 O -0.266 6.266 5 C -0.016 4.016 6 C 0.027 3.973 7 H 0.100 0.900 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.288 6.288 12 C 0.296 3.704 13 O -0.403 6.403 14 N -0.362 5.362 15 C -0.017 4.017 16 C 0.214 3.786 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.396 2.945 25.037 25.213 hybrid contribution 0.005 0.638 -0.779 1.007 sum -0.390 3.583 24.258 24.525 Atomic orbital electron populations 1.22225 0.93380 1.04036 1.03125 1.21850 0.95310 0.96099 0.85538 0.89680 1.88106 1.86501 1.33499 1.18447 1.22761 1.00221 0.92609 0.86042 1.22978 0.91635 0.90246 0.92490 0.90033 1.23271 1.03360 0.98402 0.93707 1.23130 0.99785 0.97485 0.98879 1.23137 0.98472 0.99525 0.81810 1.88553 1.54340 1.65911 1.19966 1.20266 0.80255 0.85730 0.84132 1.90710 1.39875 1.23170 1.86540 1.45618 1.57670 1.28464 1.04431 1.20954 1.00307 0.96272 0.84216 1.19731 0.86345 0.87988 0.84521 1.90491 1.45708 1.26304 1.85983 1.41805 1.48343 1.23912 1.04293 1.19781 1.33471 1.07101 0.83073 0.87598 1.25340 0.96522 0.96458 0.99468 1.69620 1.37846 1.20626 1.25303 0.85750 0.78328 0.79449 0.80505 1.19135 1.20623 1.20604 0.91376 0.90555 0.90952 0.91809 0.92378 0.89411 0.90024 0.89891 0.90331 0.91385 0.91376 0.75171 0.89791 0.89744 0.77003 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.48 37.15 0.35 -1.53 16 2 C 0.07 0.95 3.13 -27.89 -0.09 0.86 16 3 H 0.09 0.86 7.79 -51.93 -0.40 0.46 16 4 O -0.35 -4.98 9.52 -57.79 -0.55 -5.53 16 5 C 0.06 0.61 5.45 37.15 0.20 0.81 16 6 C 0.08 0.82 3.72 -25.71 -0.10 0.72 16 7 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 8 C -0.15 -0.92 6.58 -24.42 -0.16 -1.08 16 9 C -0.16 -0.87 7.02 -24.73 -0.17 -1.05 16 10 C 0.05 0.37 7.80 37.88 0.30 0.67 16 11 O -0.37 -4.36 11.04 -35.95 -0.40 -4.75 16 12 C 0.51 8.57 7.18 -10.98 -0.08 8.49 16 13 O -0.53 -10.87 16.51 -14.31 -0.24 -11.11 16 14 N -0.71 -11.84 5.49 -61.47 -0.34 -12.18 16 15 C 0.11 2.05 6.15 -5.20 -0.03 2.02 16 16 C 0.43 9.80 7.85 -10.99 -0.09 9.72 16 17 O -0.60 -15.14 15.24 5.54 0.08 -15.06 16 18 N -0.55 -13.61 5.29 -10.96 -0.06 -13.67 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 23 Si 0.93 20.49 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 28 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.11 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.41 6.55 7.21 -40.82 -0.29 6.26 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -33.77 357.98 -6.91 -40.68 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.40 Total: 12.15 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -0.10 Total: 11.78 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.33 Total: -49.02 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -1.10 Total: -36.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.77 -6.91 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.361 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds