Wall clock time and date at job start Tue Mar 31 2020 04:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46753 * 2 1 4 4 O 1.42898 * 109.46942 * 240.00429 * 2 1 3 5 5 C 1.42901 * 113.99938 * 89.99783 * 4 2 1 6 6 C 1.52999 * 109.47102 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.27676 * 54.30012 * 6 5 4 8 8 C 1.54947 * 110.30923 * 176.38943 * 6 5 4 9 9 C 1.55420 * 100.89497 * 155.28681 * 8 6 5 10 10 C 1.54386 * 102.30641 * 325.99495 * 9 8 6 11 11 O 1.43235 * 107.59227 * 21.28178 * 10 9 8 12 12 C 1.50693 * 109.47148 * 120.00458 * 2 1 3 13 13 O 1.21287 * 119.99830 * 120.00032 * 12 2 1 14 14 N 1.34780 * 120.00288 * 299.99810 * 12 2 1 15 15 C 1.46491 * 120.00091 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46957 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72354 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46867 * 90.00263 * 23 21 19 25 25 H 1.48501 * 109.47216 * 210.00120 * 23 21 19 26 26 H 1.48499 * 109.47135 * 330.00462 * 23 21 19 27 27 H 1.09001 * 109.47172 * 59.99498 * 1 2 3 28 28 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46863 * 299.99416 * 1 2 3 30 30 H 1.09004 * 109.47475 * 299.99740 * 5 4 2 31 31 H 1.08996 * 109.47525 * 59.99894 * 5 4 2 32 32 H 1.09003 * 111.12753 * 273.27760 * 8 6 5 33 33 H 1.09001 * 111.12432 * 37.44618 * 8 6 5 34 34 H 1.08993 * 110.88855 * 207.75907 * 9 8 6 35 35 H 1.09001 * 110.93464 * 84.24570 * 9 8 6 36 36 H 1.08998 * 109.82802 * 261.76806 * 10 9 8 37 37 H 1.09001 * 109.90910 * 140.83932 * 10 9 8 38 38 H 0.97003 * 119.99349 * 0.02562 * 14 12 2 39 39 H 1.09004 * 109.47166 * 60.00164 * 15 14 12 40 40 H 1.09000 * 109.47767 * 300.00232 * 15 14 12 41 41 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 42 42 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1831 -2.2941 6 6 2.7078 -0.6405 -3.4793 7 1 2.0345 -1.4749 -3.6756 8 6 2.8383 0.2529 -4.7385 9 6 3.9120 -0.5303 -5.5444 10 6 4.8070 -1.1068 -4.4263 11 8 4.0359 -1.1222 -3.2192 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7069 -0.2501 2.4546 15 6 2.1948 -0.9411 3.6506 16 6 1.6931 -0.2304 4.8811 17 8 0.9961 0.7561 4.7700 18 7 2.0138 -0.6944 6.1052 19 6 1.5528 -0.0511 7.2247 20 1 0.9322 0.8273 7.1256 21 6 1.8838 -0.5291 8.4866 22 7 2.6393 -1.5976 8.6071 23 14 1.2562 0.3478 10.0119 24 1 -0.0535 -0.2277 10.4100 25 1 2.2305 0.1738 11.1190 26 1 1.0927 1.7945 9.7191 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.2537 0.6549 -2.5589 31 1 2.9319 0.9515 -2.0451 32 1 1.8957 0.3039 -5.2834 33 1 3.1937 1.2498 -4.4777 34 1 4.4801 0.1405 -6.1888 35 1 3.4550 -1.3304 -6.1267 36 1 5.6867 -0.4768 -4.2951 37 1 5.1135 -2.1211 -4.6821 38 1 1.1489 0.5384 2.5436 39 1 3.2848 -0.9416 3.6507 40 1 1.8311 -1.9687 3.6504 41 1 2.5709 -1.4834 6.1941 42 1 2.8708 -1.9312 9.4880 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343509666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:48 Heat of formation + Delta-G solvation = -170.358625 kcal Electronic energy + Delta-G solvation = -23902.516008 eV Core-core repulsion = 20075.634729 eV Total energy + Delta-G solvation = -3826.881279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.01711 -39.56420 -38.29278 -37.31071 -34.44359 -33.70287 -32.56126 -32.07031 -31.36103 -30.32043 -27.60890 -25.88175 -24.76585 -23.53508 -22.01458 -21.58577 -20.08032 -19.58973 -18.15420 -17.48256 -17.22258 -16.98332 -16.18437 -15.73918 -15.49711 -15.17185 -15.03294 -14.76695 -14.45699 -14.23236 -13.79061 -13.70892 -13.53467 -13.27894 -12.81256 -12.51051 -12.33982 -12.18459 -12.11679 -11.86738 -11.73552 -11.63206 -11.46923 -11.34168 -11.14965 -11.12066 -10.45812 -10.31590 -10.00725 -9.72395 -9.63465 -9.36768 -8.76790 -8.63127 -8.09923 -6.51002 -3.93194 2.81137 2.92281 3.12004 3.22368 3.27710 3.49595 3.74345 3.78693 4.07486 4.12024 4.45447 4.55121 4.69258 4.79018 4.86210 4.87523 4.90066 4.98668 5.01142 5.13524 5.17444 5.18671 5.27226 5.39633 5.45611 5.51395 5.57046 5.60950 5.75965 5.93516 5.98091 6.00135 6.08102 6.68012 6.78111 6.98516 7.46283 7.83055 7.92328 8.44376 8.49888 9.04725 9.39657 9.87350 10.65843 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.042120 B = 0.002197 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.614631 B =12742.167880 C =13146.715356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.080 0.920 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.365 6.365 12 C 0.511 3.489 13 O -0.524 6.524 14 N -0.706 5.706 15 C 0.110 3.890 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 3.676 -25.385 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 H 0.105 0.895 4 O -0.265 6.265 5 C -0.016 4.016 6 C 0.027 3.973 7 H 0.098 0.902 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.030 4.030 11 O -0.285 6.285 12 C 0.295 3.705 13 O -0.400 6.400 14 N -0.363 5.363 15 C -0.017 4.017 16 C 0.214 3.786 17 O -0.485 6.485 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.104 3.236 -25.139 25.346 hybrid contribution -0.261 0.576 0.716 0.955 sum -0.364 3.811 -24.423 24.721 Atomic orbital electron populations 1.22266 0.93526 1.03941 1.03223 1.21856 0.95004 0.96315 0.85674 0.89537 1.88100 1.86500 1.33382 1.18561 1.22761 0.99418 0.92991 0.86479 1.22964 0.85864 0.95904 0.92604 0.90213 1.23273 1.00217 0.99639 0.95613 1.23132 0.97405 1.00311 0.98412 1.23151 0.94702 1.00908 0.84268 1.88606 1.22642 1.86374 1.30849 1.20253 0.80945 0.85176 0.84103 1.90725 1.37013 1.25697 1.86532 1.45619 1.53698 1.32668 1.04278 1.20950 0.99990 0.96601 0.84199 1.19734 0.86640 0.87661 0.84529 1.90487 1.43136 1.28818 1.86080 1.41802 1.45011 1.27365 1.04172 1.19726 1.29641 1.11154 0.82931 0.87666 1.25337 0.96587 0.96380 0.99474 1.69616 1.35905 1.22481 1.25412 0.85804 0.78364 0.79666 0.80129 1.20272 1.20803 1.19331 0.91454 0.90999 0.90417 0.91830 0.92387 0.89476 0.90005 0.89888 0.90376 0.91339 0.91353 0.75210 0.89796 0.89761 0.76993 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.42 37.16 0.35 -1.43 16 2 C 0.07 0.94 3.14 -27.88 -0.09 0.85 16 3 H 0.09 0.91 7.79 -51.93 -0.40 0.51 16 4 O -0.35 -4.98 9.52 -57.83 -0.55 -5.53 16 5 C 0.06 0.61 5.45 37.16 0.20 0.81 16 6 C 0.08 0.82 3.72 -25.70 -0.10 0.73 16 7 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.15 -0.92 6.58 -24.42 -0.16 -1.08 16 9 C -0.15 -0.90 7.02 -24.72 -0.17 -1.07 16 10 C 0.05 0.40 7.80 37.88 0.30 0.69 16 11 O -0.37 -4.66 11.04 -35.96 -0.40 -5.06 16 12 C 0.51 8.70 7.23 -10.99 -0.08 8.62 16 13 O -0.52 -11.08 16.50 -14.36 -0.24 -11.31 16 14 N -0.71 -12.00 5.42 -61.48 -0.33 -12.34 16 15 C 0.11 2.08 6.15 -5.20 -0.03 2.05 16 16 C 0.43 9.88 7.85 -10.98 -0.09 9.79 16 17 O -0.60 -15.21 15.24 5.55 0.08 -15.13 16 18 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 19 C -0.31 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 23 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.76 7.56 -51.93 -0.39 0.37 16 30 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.41 6.60 6.85 -40.82 -0.28 6.32 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -34.27 357.22 -6.88 -41.15 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.37 Total: 12.23 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -0.11 Total: 12.08 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.33 Total: -49.36 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.10 Total: -37.03 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.27 -6.88 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.208 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds