Wall clock time and date at job start Tue Mar 31 2020 04:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46753 * 2 1 4 4 O 1.42898 * 109.46942 * 240.00429 * 2 1 3 5 5 C 1.42901 * 113.99938 * 89.99783 * 4 2 1 6 6 C 1.52999 * 109.47102 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.27676 * 54.30012 * 6 5 4 8 8 C 1.54947 * 110.30923 * 176.38943 * 6 5 4 9 9 C 1.55420 * 100.89497 * 155.28681 * 8 6 5 10 10 C 1.54386 * 102.30641 * 325.99495 * 9 8 6 11 11 O 1.43235 * 107.59227 * 21.28178 * 10 9 8 12 12 C 1.50693 * 109.47148 * 120.00458 * 2 1 3 13 13 O 1.21287 * 119.99830 * 120.00032 * 12 2 1 14 14 N 1.34780 * 120.00288 * 299.99810 * 12 2 1 15 15 C 1.46491 * 120.00091 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46957 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72354 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46867 * 90.00263 * 23 21 19 25 25 H 1.48501 * 109.47216 * 210.00120 * 23 21 19 26 26 H 1.48499 * 109.47135 * 330.00462 * 23 21 19 27 27 H 1.09001 * 109.47172 * 59.99498 * 1 2 3 28 28 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46863 * 299.99416 * 1 2 3 30 30 H 1.09004 * 109.47475 * 299.99740 * 5 4 2 31 31 H 1.08996 * 109.47525 * 59.99894 * 5 4 2 32 32 H 1.09003 * 111.12753 * 273.27760 * 8 6 5 33 33 H 1.09001 * 111.12432 * 37.44618 * 8 6 5 34 34 H 1.08993 * 110.88855 * 207.75907 * 9 8 6 35 35 H 1.09001 * 110.93464 * 84.24570 * 9 8 6 36 36 H 1.08998 * 109.82802 * 261.76806 * 10 9 8 37 37 H 1.09001 * 109.90910 * 140.83932 * 10 9 8 38 38 H 0.97003 * 119.99349 * 0.02562 * 14 12 2 39 39 H 1.09004 * 109.47166 * 60.00164 * 15 14 12 40 40 H 1.09000 * 109.47767 * 300.00232 * 15 14 12 41 41 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 42 42 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1831 -2.2941 6 6 2.7078 -0.6405 -3.4793 7 1 2.0345 -1.4749 -3.6756 8 6 2.8383 0.2529 -4.7385 9 6 3.9120 -0.5303 -5.5444 10 6 4.8070 -1.1068 -4.4263 11 8 4.0359 -1.1222 -3.2192 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7069 -0.2501 2.4546 15 6 2.1948 -0.9411 3.6506 16 6 1.6931 -0.2304 4.8811 17 8 0.9961 0.7561 4.7700 18 7 2.0138 -0.6944 6.1052 19 6 1.5528 -0.0511 7.2247 20 1 0.9322 0.8273 7.1256 21 6 1.8838 -0.5291 8.4866 22 7 2.6393 -1.5976 8.6071 23 14 1.2562 0.3478 10.0119 24 1 -0.0535 -0.2277 10.4100 25 1 2.2305 0.1738 11.1190 26 1 1.0927 1.7945 9.7191 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.2537 0.6549 -2.5589 31 1 2.9319 0.9515 -2.0451 32 1 1.8957 0.3039 -5.2834 33 1 3.1937 1.2498 -4.4777 34 1 4.4801 0.1405 -6.1888 35 1 3.4550 -1.3304 -6.1267 36 1 5.6867 -0.4768 -4.2951 37 1 5.1135 -2.1211 -4.6821 38 1 1.1489 0.5384 2.5436 39 1 3.2848 -0.9416 3.6507 40 1 1.8311 -1.9687 3.6504 41 1 2.5709 -1.4834 6.1941 42 1 2.8708 -1.9312 9.4880 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343509666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:48 Heat of formation + Delta-G solvation = -196.406937 kcal Electronic energy + Delta-G solvation = -23903.645547 eV Core-core repulsion = 20075.634729 eV Total energy + Delta-G solvation = -3828.010819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24318 -40.47441 -39.98786 -38.44062 -36.26491 -35.37808 -33.43803 -33.24508 -32.86137 -31.11816 -29.18459 -26.73406 -26.41698 -24.70691 -22.56051 -22.28093 -21.41593 -21.38607 -20.09353 -18.76864 -18.13186 -17.89021 -17.41499 -16.92741 -16.82336 -16.56207 -16.38300 -16.11168 -15.80402 -15.63920 -15.27162 -14.87969 -14.50145 -14.13428 -14.01540 -13.73991 -13.55020 -13.49295 -13.30854 -13.03863 -12.90332 -12.65984 -12.46160 -12.44919 -12.15281 -12.12335 -12.06495 -11.67526 -11.57281 -11.07520 -10.59836 -10.52863 -10.46831 -10.24959 -10.09541 -8.51274 -6.01832 1.36275 1.42798 1.50198 1.55499 1.72864 1.89627 2.28741 2.75084 2.91023 3.11345 3.15703 3.55179 3.62640 3.87495 3.90978 3.98215 4.05699 4.15902 4.20615 4.26546 4.38196 4.40242 4.41149 4.50005 4.58788 4.69785 4.79939 4.82513 4.89528 4.98288 5.01863 5.18316 5.22540 5.24930 5.38068 5.90748 6.01421 6.18832 6.45094 6.51458 7.02461 7.13068 7.43174 7.92543 8.65630 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.042120 B = 0.002197 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.614631 B =12742.167880 C =13146.715356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H 0.115 0.885 4 O -0.382 6.382 5 C 0.054 3.946 6 C 0.073 3.927 7 H 0.071 0.929 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.035 3.965 11 O -0.410 6.410 12 C 0.508 3.492 13 O -0.571 6.571 14 N -0.701 5.701 15 C 0.120 3.880 16 C 0.435 3.565 17 O -0.621 6.621 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.089 0.911 21 C -0.013 4.013 22 N -0.917 5.917 23 Si 0.999 3.001 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.269 1.269 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.398 0.602 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 5.107 -26.667 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.132 0.868 4 O -0.301 6.301 5 C -0.022 4.022 6 C 0.015 3.985 7 H 0.089 0.911 8 C -0.176 4.176 9 C -0.185 4.185 10 C -0.041 4.041 11 O -0.330 6.330 12 C 0.295 3.705 13 O -0.450 6.450 14 N -0.357 5.357 15 C -0.007 4.007 16 C 0.222 3.778 17 O -0.509 6.509 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.106 0.894 21 C -0.213 4.213 22 N -0.557 5.557 23 Si 0.822 3.178 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.193 1.193 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.255 0.745 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.232 0.768 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.962 4.677 -26.445 26.873 hybrid contribution 0.042 0.104 1.044 1.050 sum -0.920 4.781 -25.401 25.864 Atomic orbital electron populations 1.22251 0.91325 1.03605 1.05082 1.21923 0.96444 0.96525 0.83459 0.86770 1.88066 1.86886 1.35417 1.19740 1.23056 1.01214 0.92658 0.85258 1.23192 0.84596 0.96507 0.94157 0.91062 1.23273 1.01433 0.99121 0.93817 1.23137 0.96975 1.00792 0.97634 1.23349 0.95159 1.01298 0.84323 1.88558 1.24275 1.86928 1.33286 1.21131 0.79774 0.84596 0.85008 1.90700 1.39198 1.27933 1.87166 1.45604 1.53605 1.32633 1.03886 1.20772 1.00317 0.96532 0.83117 1.20322 0.85365 0.87050 0.85084 1.90463 1.43936 1.29869 1.86647 1.41861 1.45546 1.27625 1.04473 1.19757 1.30901 1.11583 0.84333 0.89356 1.26174 0.96365 0.96917 1.01882 1.69687 1.36319 1.23277 1.26405 0.84836 0.78109 0.78380 0.76459 1.19535 1.19751 1.19310 0.88259 0.92436 0.89855 0.88369 0.92273 0.87147 0.89189 0.87871 0.89620 0.91018 0.91521 0.74471 0.89045 0.88988 0.76762 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.42 71.99 0.68 -2.37 16 2 C 0.08 1.89 3.14 29.85 0.09 1.98 16 3 H 0.11 2.12 7.79 -2.39 -0.02 2.10 16 4 O -0.38 -10.66 9.52 -127.37 -1.21 -11.87 16 5 C 0.05 1.00 5.45 71.98 0.39 1.39 16 6 C 0.07 1.35 3.72 31.26 0.12 1.46 16 7 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 8 C -0.14 -1.34 6.58 32.09 0.21 -1.13 16 9 C -0.15 -1.41 7.02 31.90 0.22 -1.19 16 10 C 0.03 0.58 7.80 72.45 0.56 1.15 16 11 O -0.41 -10.60 11.04 -148.29 -1.64 -12.23 16 12 C 0.51 17.16 7.23 87.65 0.63 17.79 16 13 O -0.57 -24.56 16.50 15.99 0.26 -24.29 16 14 N -0.70 -23.47 5.42 -466.80 -2.53 -26.00 16 15 C 0.12 4.55 6.15 85.64 0.53 5.08 16 16 C 0.43 20.16 7.85 87.66 0.69 20.85 16 17 O -0.62 -31.68 15.24 -3.07 -0.05 -31.73 16 18 N -0.56 -28.35 5.29 -306.98 -1.62 -29.97 16 19 C -0.34 -18.55 9.68 84.04 0.81 -17.73 16 20 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 21 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 22 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 23 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.45 7.56 -2.39 -0.02 1.43 16 30 H 0.10 1.08 7.87 -2.38 -0.02 1.06 16 31 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.74 8.06 -2.39 -0.02 0.72 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.42 13.02 6.85 -92.71 -0.64 12.38 16 39 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 42 H 0.28 14.02 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -75.33 357.22 0.61 -74.72 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.33 Total: 39.34 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 5.41 Total: 27.07 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.87 Total: -104.80 kcal Atomic # 8 Polarization: -77.50 SS G_CDS: -2.63 Total: -80.13 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -75.33 0.61 -74.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.684 kcal (2) G-P(sol) polarization free energy of solvation -75.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds