Wall clock time and date at job start Tue Mar 31 2020 04:01:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46905 * 109.47434 * 2 1
4 4 C 1.47011 * 110.99738 * 66.04082 * 3 2 1
5 5 C 1.53096 * 109.25767 * 177.60932 * 4 3 2
6 6 O 1.43012 * 109.25769 * 56.84989 * 5 4 3
7 7 C 1.43013 * 113.74033 * 301.33182 * 6 5 4
8 8 H 1.09000 * 109.50950 * 298.69109 * 7 6 5
9 9 C 1.50700 * 109.50954 * 178.60581 * 7 6 5
10 10 O 1.21294 * 119.99839 * 337.25356 * 9 7 6
11 11 N 1.34780 * 120.00372 * 157.25621 * 9 7 6
12 12 C 1.37095 * 119.99702 * 3.25232 * 11 9 7
13 13 H 1.08005 * 120.00211 * 48.12018 * 12 11 9
14 14 C 1.38949 * 120.00171 * 228.11726 * 12 11 9
15 15 N 1.31407 * 120.00278 * 206.53591 * 14 12 11
16 16 Si 1.86805 * 119.99717 * 26.54032 * 14 12 11
17 17 H 1.48505 * 109.47312 * 86.51012 * 16 14 12
18 18 H 1.48493 * 109.47102 * 206.51127 * 16 14 12
19 19 H 1.48503 * 109.47002 * 326.51310 * 16 14 12
20 20 C 1.46500 * 119.99866 * 183.25448 * 11 9 7
21 21 C 1.50700 * 109.47069 * 274.03941 * 20 11 9
22 22 O 1.20824 * 120.00162 * 0.28467 * 21 20 11
23 23 O 1.34225 * 119.99668 * 179.97438 * 21 20 11
24 24 C 1.45201 * 116.99794 * 180.02562 * 23 21 20
25 25 C 1.47008 * 110.99729 * 302.40830 * 3 2 1
26 26 H 1.08994 * 109.47192 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47394 * 299.99954 * 1 2 3
28 28 H 1.09005 * 109.46939 * 60.00010 * 1 2 3
29 29 H 1.09005 * 109.47407 * 239.99933 * 2 1 3
30 30 H 1.09005 * 109.46939 * 119.99990 * 2 1 3
31 31 H 1.09007 * 109.50674 * 57.68188 * 4 3 2
32 32 H 1.09000 * 109.50882 * 297.54590 * 4 3 2
33 33 H 1.09004 * 109.50799 * 296.91525 * 5 4 3
34 34 H 1.08999 * 109.51030 * 176.79048 * 5 4 3
35 35 H 0.97003 * 119.99732 * 180.02562 * 15 14 12
36 36 H 1.08999 * 109.46762 * 154.04253 * 20 11 9
37 37 H 1.09003 * 109.47262 * 34.04619 * 20 11 9
38 38 H 1.09002 * 109.47035 * 300.00134 * 24 23 21
39 39 H 1.08991 * 109.47017 * 60.00551 * 24 23 21
40 40 H 1.08999 * 109.47035 * 180.02562 * 24 23 21
41 41 H 1.09006 * 109.50510 * 62.45433 * 25 3 2
42 42 H 1.08995 * 109.51213 * 302.32785 * 25 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6699 2.0675 1.2542
5 6 2.2492 3.4845 1.2367
6 8 1.7595 4.1800 0.0870
7 6 2.0828 3.5433 -1.1521
8 1 3.1658 3.4936 -1.2642
9 6 1.4948 4.3338 -2.2925
10 8 0.5509 5.0700 -2.0969
11 7 2.0175 4.2225 -3.5298
12 6 3.0407 3.3409 -3.7648
13 1 2.9698 2.3238 -3.4085
14 6 4.1690 3.7557 -4.4616
15 7 4.8833 2.8823 -5.1353
16 14 4.6707 5.5550 -4.4406
17 1 5.5218 5.8178 -3.2524
18 1 5.4331 5.8707 -5.6751
19 1 3.4559 6.4068 -4.3775
20 6 1.4925 5.0439 -4.6234
21 6 0.3038 4.3551 -5.2429
22 8 -0.0698 3.2901 -4.8115
23 8 -0.3436 4.9277 -6.2698
24 6 -1.4799 4.2078 -6.8165
25 6 1.5018 2.1269 -1.1587
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 1.8933 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8900
31 1 2.0850 1.5150 2.0973
32 1 0.5853 2.1188 1.3504
33 1 3.3372 3.4324 1.1945
34 1 1.9443 4.0136 2.1395
35 1 5.6712 3.1719 -5.6214
36 1 2.2666 5.1817 -5.3782
37 1 1.1875 6.0153 -4.2342
38 1 -1.1516 3.2351 -7.1829
39 1 -2.2303 4.0686 -6.0383
40 1 -1.9105 4.7790 -7.6389
41 1 0.4145 2.1791 -1.1011
42 1 1.7941 1.6178 -2.0771
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000345554403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:01:23
Heat of formation + Delta-G solvation = -135.681345 kcal
Electronic energy + Delta-G solvation = -26487.491590 eV
Core-core repulsion = 22662.114031 eV
Total energy + Delta-G solvation = -3825.377559 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.12662 -39.56751 -38.15991 -36.05356 -35.72113 -34.80305 -32.13163 -31.21262
-30.48552 -28.81646 -26.91704 -26.08969 -25.00243 -23.86761 -22.64290 -20.87998
-19.72833 -19.17730 -17.73317 -17.19285 -16.72319 -15.97166 -15.89557 -15.63814
-15.44558 -15.15531 -14.82098 -14.54429 -14.25796 -13.82583 -13.79018 -13.44133
-13.16395 -12.91737 -12.69999 -12.57526 -12.23488 -11.97522 -11.75927 -11.72282
-11.54344 -11.42676 -11.06942 -10.96091 -10.80113 -10.60836 -10.33703 -10.31023
-10.12391 -9.83546 -9.29358 -9.20234 -8.66797 -8.09487 -7.87902 -6.63835
-4.31513 2.89376 3.01079 3.03831 3.15788 3.23797 3.47573 3.85521
4.04002 4.16589 4.61608 4.89406 5.06968 5.15556 5.27370 5.35508
5.37829 5.45487 5.46517 5.48770 5.50440 5.55274 5.70338 5.76127
5.80440 5.84659 5.92233 5.97282 6.00192 6.07144 6.08797 6.25790
6.33589 6.47154 6.87138 7.14533 7.17996 7.21451 7.55984 7.89396
8.18330 8.41674 8.83174 9.13596 9.48682 10.45223
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.012471 B = 0.006429 C = 0.005303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2244.646329 B = 4354.204656 C = 5279.177644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.052 3.948
3 N -0.531 5.531
4 C 0.014 3.986
5 C 0.064 3.936
6 O -0.367 6.367
7 C 0.097 3.903
8 H 0.100 0.900
9 C 0.507 3.493
10 O -0.570 6.570
11 N -0.446 5.446
12 C -0.359 4.359
13 H 0.105 0.895
14 C 0.079 3.921
15 N -0.838 5.838
16 Si 0.856 3.144
17 H -0.268 1.268
18 H -0.279 1.279
19 H -0.255 1.255
20 C 0.122 3.878
21 C 0.449 3.551
22 O -0.493 6.493
23 O -0.370 6.370
24 C 0.037 3.963
25 C 0.036 3.964
26 H 0.059 0.941
27 H 0.054 0.946
28 H 0.061 0.939
29 H 0.079 0.921
30 H 0.073 0.927
31 H 0.081 0.919
32 H 0.043 0.957
33 H 0.059 0.941
34 H 0.095 0.905
35 H 0.278 0.722
36 H 0.111 0.889
37 H 0.106 0.894
38 H 0.059 0.941
39 H 0.057 0.943
40 H 0.094 0.906
41 H 0.045 0.955
42 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.674 -1.184 4.814 6.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.253 4.253
2 C -0.076 4.076
3 N -0.255 5.255
4 C -0.115 4.115
5 C -0.013 4.013
6 O -0.285 6.285
7 C 0.036 3.964
8 H 0.118 0.882
9 C 0.295 3.705
10 O -0.452 6.452
11 N -0.169 5.169
12 C -0.485 4.485
13 H 0.122 0.878
14 C -0.131 4.131
15 N -0.470 5.470
16 Si 0.680 3.320
17 H -0.193 1.193
18 H -0.205 1.205
19 H -0.179 1.179
20 C -0.003 4.003
21 C 0.289 3.711
22 O -0.378 6.378
23 O -0.287 6.287
24 C -0.057 4.057
25 C -0.092 4.092
26 H 0.078 0.922
27 H 0.073 0.927
28 H 0.080 0.920
29 H 0.098 0.902
30 H 0.091 0.909
31 H 0.099 0.901
32 H 0.061 0.939
33 H 0.077 0.923
34 H 0.113 0.887
35 H 0.088 0.912
36 H 0.129 0.871
37 H 0.124 0.876
38 H 0.077 0.923
39 H 0.076 0.924
40 H 0.112 0.888
41 H 0.063 0.937
42 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -4.700 -1.059 4.864 6.846
hybrid contribution -0.458 0.232 -0.196 0.550
sum -5.158 -0.827 4.668 7.006
Atomic orbital electron populations
1.22447 0.98392 1.02077 1.02376 1.22149 0.92827 0.89781 1.02824
1.62435 1.58838 1.02151 1.02118 1.22822 0.99308 0.96222 0.93100
1.22631 0.98594 0.91086 0.89037 1.88028 1.78404 1.48900 1.13188
1.21714 1.01019 0.90311 0.83365 0.88213 1.20009 0.84162 0.82929
0.83362 1.90572 1.29380 1.41149 1.84052 1.43183 1.31973 1.38260
1.03516 1.19012 0.94573 0.93786 1.41172 0.87809 1.25495 0.95629
0.98248 0.93777 1.69854 1.16760 1.36010 1.24344 0.87235 0.80265
0.85750 0.78731 1.19341 1.20468 1.17945 1.21458 0.91772 0.95268
0.91832 1.24906 0.84094 0.84895 0.77175 1.90593 1.64928 1.21995
1.60295 1.86526 1.43024 1.51273 1.47847 1.23117 0.86938 0.97290
0.98393 1.22602 0.97841 0.93945 0.94772 0.92234 0.92740 0.91961
0.90210 0.90865 0.90069 0.93892 0.92311 0.88734 0.91168 0.87095
0.87569 0.92253 0.92436 0.88792 0.93715 0.88066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.52 9.20 37.15 0.34 -2.18 16
2 C 0.05 0.71 6.10 -3.82 -0.02 0.68 16
3 N -0.53 -8.60 4.94 -234.31 -1.16 -9.76 16
4 C 0.01 0.20 5.33 -3.71 -0.02 0.18 16
5 C 0.06 0.97 7.01 37.21 0.26 1.23 16
6 O -0.37 -7.51 10.10 -53.99 -0.55 -8.06 16
7 C 0.10 2.07 2.49 -27.83 -0.07 2.00 16
8 H 0.10 2.18 7.35 -51.93 -0.38 1.80 16
9 C 0.51 12.29 6.75 -10.98 -0.07 12.22 16
10 O -0.57 -15.05 16.33 -13.21 -0.22 -15.27 16
11 N -0.45 -10.71 1.46 -116.09 -0.17 -10.88 16
12 C -0.36 -9.00 8.17 -14.93 -0.12 -9.12 16
13 H 0.10 2.77 6.21 -52.48 -0.33 2.44 16
14 C 0.08 1.97 5.10 -17.47 -0.09 1.88 16
15 N -0.84 -21.86 13.96 55.50 0.77 -21.09 16
16 Si 0.86 18.68 26.70 -169.99 -4.54 14.14 16
17 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16
18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
19 H -0.26 -5.34 5.67 56.52 0.32 -5.02 16
20 C 0.12 2.68 4.10 -5.19 -0.02 2.66 16
21 C 0.45 9.81 8.00 36.01 0.29 10.10 16
22 O -0.49 -12.02 16.10 -18.75 -0.30 -12.32 16
23 O -0.37 -6.83 10.57 -39.25 -0.41 -7.25 16
24 C 0.04 0.53 10.56 101.05 1.07 1.60 16
25 C 0.04 0.71 4.29 -3.71 -0.02 0.69 16
26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
27 H 0.05 0.69 6.61 -51.93 -0.34 0.34 16
28 H 0.06 0.94 6.42 -51.93 -0.33 0.61 16
29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16
30 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16
31 H 0.08 0.93 8.12 -51.92 -0.42 0.51 16
32 H 0.04 0.63 6.59 -51.93 -0.34 0.28 16
33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
35 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16
36 H 0.11 2.32 5.29 -51.93 -0.27 2.05 16
37 H 0.11 2.22 7.59 -51.93 -0.39 1.82 16
38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
39 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16
40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
41 H 0.04 0.92 6.40 -51.93 -0.33 0.58 16
42 H 0.10 2.12 6.39 -51.93 -0.33 1.79 16
LS Contribution 337.48 15.07 5.09 5.09
Total: -1.00 -30.99 337.48 -6.04 -37.03
By element:
Atomic # 1 Polarization: 12.50 SS G_CDS: -6.08 Total: 6.42 kcal
Atomic # 6 Polarization: 20.41 SS G_CDS: 1.52 Total: 21.94 kcal
Atomic # 7 Polarization: -41.17 SS G_CDS: -0.55 Total: -41.72 kcal
Atomic # 8 Polarization: -41.41 SS G_CDS: -1.48 Total: -42.89 kcal
Atomic # 14 Polarization: 18.68 SS G_CDS: -4.54 Total: 14.14 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -30.99 -6.04 -37.03 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345554403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.656 kcal
(2) G-P(sol) polarization free energy of solvation -30.989 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.681 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds