Wall clock time and date at job start Tue Mar 31 2020 04:01:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46905 * 109.47434 * 2 1
4 4 C 1.47011 * 110.99738 * 66.04082 * 3 2 1
5 5 C 1.53096 * 109.25767 * 177.60932 * 4 3 2
6 6 O 1.43012 * 109.25769 * 56.84989 * 5 4 3
7 7 C 1.43013 * 113.74033 * 301.33182 * 6 5 4
8 8 H 1.09000 * 109.50950 * 298.69109 * 7 6 5
9 9 C 1.50700 * 109.50954 * 178.60581 * 7 6 5
10 10 O 1.21294 * 119.99839 * 337.25356 * 9 7 6
11 11 N 1.34780 * 120.00372 * 157.25621 * 9 7 6
12 12 C 1.37095 * 119.99702 * 3.25232 * 11 9 7
13 13 H 1.08005 * 120.00211 * 48.12018 * 12 11 9
14 14 C 1.38949 * 120.00171 * 228.11726 * 12 11 9
15 15 N 1.31407 * 120.00278 * 206.53591 * 14 12 11
16 16 Si 1.86805 * 119.99717 * 26.54032 * 14 12 11
17 17 H 1.48505 * 109.47312 * 86.51012 * 16 14 12
18 18 H 1.48493 * 109.47102 * 206.51127 * 16 14 12
19 19 H 1.48503 * 109.47002 * 326.51310 * 16 14 12
20 20 C 1.46500 * 119.99866 * 183.25448 * 11 9 7
21 21 C 1.50700 * 109.47069 * 274.03941 * 20 11 9
22 22 O 1.20824 * 120.00162 * 0.28467 * 21 20 11
23 23 O 1.34225 * 119.99668 * 179.97438 * 21 20 11
24 24 C 1.45201 * 116.99794 * 180.02562 * 23 21 20
25 25 C 1.47008 * 110.99729 * 302.40830 * 3 2 1
26 26 H 1.08994 * 109.47192 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47394 * 299.99954 * 1 2 3
28 28 H 1.09005 * 109.46939 * 60.00010 * 1 2 3
29 29 H 1.09005 * 109.47407 * 239.99933 * 2 1 3
30 30 H 1.09005 * 109.46939 * 119.99990 * 2 1 3
31 31 H 1.09007 * 109.50674 * 57.68188 * 4 3 2
32 32 H 1.09000 * 109.50882 * 297.54590 * 4 3 2
33 33 H 1.09004 * 109.50799 * 296.91525 * 5 4 3
34 34 H 1.08999 * 109.51030 * 176.79048 * 5 4 3
35 35 H 0.97003 * 119.99732 * 180.02562 * 15 14 12
36 36 H 1.08999 * 109.46762 * 154.04253 * 20 11 9
37 37 H 1.09003 * 109.47262 * 34.04619 * 20 11 9
38 38 H 1.09002 * 109.47035 * 300.00134 * 24 23 21
39 39 H 1.08991 * 109.47017 * 60.00551 * 24 23 21
40 40 H 1.08999 * 109.47035 * 180.02562 * 24 23 21
41 41 H 1.09006 * 109.50510 * 62.45433 * 25 3 2
42 42 H 1.08995 * 109.51213 * 302.32785 * 25 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6699 2.0675 1.2542
5 6 2.2492 3.4845 1.2367
6 8 1.7595 4.1800 0.0870
7 6 2.0828 3.5433 -1.1521
8 1 3.1658 3.4936 -1.2642
9 6 1.4948 4.3338 -2.2925
10 8 0.5509 5.0700 -2.0969
11 7 2.0175 4.2225 -3.5298
12 6 3.0407 3.3409 -3.7648
13 1 2.9698 2.3238 -3.4085
14 6 4.1690 3.7557 -4.4616
15 7 4.8833 2.8823 -5.1353
16 14 4.6707 5.5550 -4.4406
17 1 5.5218 5.8178 -3.2524
18 1 5.4331 5.8707 -5.6751
19 1 3.4559 6.4068 -4.3775
20 6 1.4925 5.0439 -4.6234
21 6 0.3038 4.3551 -5.2429
22 8 -0.0698 3.2901 -4.8115
23 8 -0.3436 4.9277 -6.2698
24 6 -1.4799 4.2078 -6.8165
25 6 1.5018 2.1269 -1.1587
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 1.8933 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8900
31 1 2.0850 1.5150 2.0973
32 1 0.5853 2.1188 1.3504
33 1 3.3372 3.4324 1.1945
34 1 1.9443 4.0136 2.1395
35 1 5.6712 3.1719 -5.6214
36 1 2.2666 5.1817 -5.3782
37 1 1.1875 6.0153 -4.2342
38 1 -1.1516 3.2351 -7.1829
39 1 -2.2303 4.0686 -6.0383
40 1 -1.9105 4.7790 -7.6389
41 1 0.4145 2.1791 -1.1011
42 1 1.7941 1.6178 -2.0771
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000345554403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:01:23
Heat of formation + Delta-G solvation = -157.218294 kcal
Electronic energy + Delta-G solvation = -26488.425502 eV
Core-core repulsion = 22662.114031 eV
Total energy + Delta-G solvation = -3826.311472 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.83136 -41.11285 -39.80240 -37.61834 -37.22726 -36.68467 -34.07857 -32.72801
-31.68121 -30.39693 -28.24094 -27.57319 -26.79159 -25.38734 -23.87479 -22.50533
-21.23357 -20.86902 -19.49552 -18.89411 -18.43167 -17.52179 -17.46610 -17.16994
-17.12851 -16.65789 -16.19309 -15.97192 -15.96598 -15.44739 -15.16087 -14.83296
-14.66119 -14.59614 -14.26975 -14.25539 -13.60524 -13.41003 -13.27713 -13.05914
-12.98478 -12.82352 -12.71187 -12.55558 -12.36612 -11.95565 -11.85373 -11.81588
-11.61746 -11.56624 -11.13007 -10.70674 -10.55196 -9.80711 -9.38942 -8.57514
-6.29837 1.16134 1.27523 1.32205 1.44233 1.48884 1.76424 2.17280
2.27585 2.76543 2.86795 3.24651 3.81573 3.86692 3.92689 3.96644
4.03038 4.07287 4.18087 4.24309 4.27032 4.29803 4.30594 4.34165
4.46397 4.48456 4.62892 4.63697 4.74062 4.78210 4.90335 4.96000
4.97463 5.22984 5.24119 5.31893 5.84180 5.97653 6.03547 6.07690
6.21112 6.73446 6.88808 7.20164 7.57646 8.55029
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.012471 B = 0.006429 C = 0.005303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2244.646329 B = 4354.204656 C = 5279.177644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.050 3.950
3 N -0.539 5.539
4 C 0.016 3.984
5 C 0.053 3.947
6 O -0.391 6.391
7 C 0.104 3.896
8 H 0.090 0.910
9 C 0.497 3.503
10 O -0.598 6.598
11 N -0.449 5.449
12 C -0.361 4.361
13 H 0.076 0.924
14 C 0.048 3.952
15 N -0.872 5.872
16 Si 0.907 3.093
17 H -0.270 1.270
18 H -0.267 1.267
19 H -0.242 1.242
20 C 0.112 3.888
21 C 0.451 3.549
22 O -0.527 6.527
23 O -0.364 6.364
24 C 0.029 3.971
25 C 0.054 3.946
26 H 0.081 0.919
27 H 0.060 0.940
28 H 0.031 0.969
29 H 0.070 0.930
30 H 0.105 0.895
31 H 0.119 0.881
32 H 0.040 0.960
33 H 0.065 0.935
34 H 0.127 0.873
35 H 0.285 0.715
36 H 0.122 0.878
37 H 0.119 0.881
38 H 0.057 0.943
39 H 0.055 0.945
40 H 0.141 0.859
41 H 0.028 0.972
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.722 -0.631 5.587 7.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C -0.077 4.077
3 N -0.263 5.263
4 C -0.112 4.112
5 C -0.023 4.023
6 O -0.310 6.310
7 C 0.043 3.957
8 H 0.108 0.892
9 C 0.287 3.713
10 O -0.481 6.481
11 N -0.171 5.171
12 C -0.488 4.488
13 H 0.094 0.906
14 C -0.160 4.160
15 N -0.506 5.506
16 Si 0.729 3.271
17 H -0.196 1.196
18 H -0.191 1.191
19 H -0.166 1.166
20 C -0.013 4.013
21 C 0.293 3.707
22 O -0.415 6.415
23 O -0.280 6.280
24 C -0.064 4.064
25 C -0.075 4.075
26 H 0.100 0.900
27 H 0.079 0.921
28 H 0.050 0.950
29 H 0.088 0.912
30 H 0.123 0.877
31 H 0.137 0.863
32 H 0.058 0.942
33 H 0.083 0.917
34 H 0.145 0.855
35 H 0.095 0.905
36 H 0.140 0.860
37 H 0.136 0.864
38 H 0.076 0.924
39 H 0.074 0.926
40 H 0.159 0.841
41 H 0.046 0.954
42 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -4.750 -0.503 5.619 7.375
hybrid contribution -0.511 -0.001 -0.443 0.677
sum -5.261 -0.504 5.176 7.397
Atomic orbital electron populations
1.22377 0.97935 1.03145 1.01153 1.22268 0.93201 0.88301 1.03934
1.62444 1.58949 1.03145 1.01803 1.22926 0.99376 0.95898 0.93007
1.23039 0.99127 0.91954 0.88173 1.87990 1.78995 1.50148 1.13838
1.21506 1.00020 0.90806 0.83395 0.89213 1.20564 0.83896 0.82753
0.84120 1.90529 1.30543 1.42478 1.84582 1.43222 1.31788 1.38004
1.04128 1.18770 0.95715 0.92924 1.41353 0.90608 1.25989 0.95162
1.01817 0.93033 1.69898 1.17475 1.37977 1.25221 0.86419 0.80399
0.81300 0.79002 1.19555 1.19123 1.16561 1.21597 0.92478 0.95431
0.91753 1.24770 0.84089 0.84255 0.77586 1.90582 1.65975 1.23431
1.61561 1.86491 1.43966 1.51198 1.46392 1.23536 0.85400 0.98018
0.99494 1.22245 0.96534 0.93201 0.95499 0.90010 0.92072 0.94986
0.91169 0.87663 0.86286 0.94151 0.91708 0.85495 0.90499 0.86006
0.86352 0.92414 0.92596 0.84114 0.95407 0.90614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.71 9.20 71.98 0.66 -4.05 16
2 C 0.05 1.30 6.10 86.30 0.53 1.83 16
3 N -0.54 -17.16 4.94 -895.21 -4.42 -21.58 16
4 C 0.02 0.41 5.33 86.31 0.46 0.87 16
5 C 0.05 1.53 7.01 72.01 0.50 2.03 16
6 O -0.39 -15.98 10.10 -131.05 -1.32 -17.30 16
7 C 0.10 4.56 2.49 29.88 0.07 4.64 16
8 H 0.09 4.07 7.35 -2.39 -0.02 4.05 16
9 C 0.50 24.76 6.75 87.66 0.59 25.35 16
10 O -0.60 -32.21 16.33 14.86 0.24 -31.96 16
11 N -0.45 -22.01 1.46 -639.59 -0.93 -22.94 16
12 C -0.36 -18.66 8.17 84.04 0.69 -17.98 16
13 H 0.08 4.29 6.21 -2.91 -0.02 4.27 16
14 C 0.05 2.43 5.10 84.93 0.43 2.86 16
15 N -0.87 -46.06 13.96 21.66 0.30 -45.75 16
16 Si 0.91 37.91 26.70 68.60 1.83 39.74 16
17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
18 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16
19 H -0.24 -9.54 5.67 99.48 0.56 -8.98 16
20 C 0.11 4.92 4.10 85.63 0.35 5.27 16
21 C 0.45 19.81 8.00 71.24 0.57 20.38 16
22 O -0.53 -26.39 16.10 21.97 0.35 -26.04 16
23 O -0.36 -13.05 10.57 -51.37 -0.54 -13.59 16
24 C 0.03 0.77 10.56 113.37 1.20 1.97 16
25 C 0.05 2.19 4.29 86.32 0.37 2.56 16
26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
27 H 0.06 1.44 6.61 -2.39 -0.02 1.43 16
28 H 0.03 0.99 6.42 -2.38 -0.02 0.97 16
29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16
30 H 0.11 2.09 8.11 -2.38 -0.02 2.07 16
31 H 0.12 2.26 8.12 -2.38 -0.02 2.24 16
32 H 0.04 1.10 6.59 -2.39 -0.02 1.08 16
33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16
34 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16
35 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16
36 H 0.12 5.01 5.29 -2.39 -0.01 5.00 16
37 H 0.12 4.88 7.59 -2.39 -0.02 4.86 16
38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
39 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16
40 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16
41 H 0.03 1.20 6.40 -2.38 -0.02 1.19 16
42 H 0.08 3.41 6.39 -2.39 -0.02 3.39 16
Total: -1.00 -68.77 337.48 2.83 -65.94
By element:
Atomic # 1 Polarization: 26.86 SS G_CDS: 0.89 Total: 27.75 kcal
Atomic # 6 Polarization: 39.31 SS G_CDS: 6.43 Total: 45.74 kcal
Atomic # 7 Polarization: -85.23 SS G_CDS: -5.05 Total: -90.27 kcal
Atomic # 8 Polarization: -87.63 SS G_CDS: -1.27 Total: -88.90 kcal
Atomic # 14 Polarization: 37.91 SS G_CDS: 1.83 Total: 39.74 kcal
Total: -68.77 2.83 -65.94 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345554403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.276 kcal
(2) G-P(sol) polarization free energy of solvation -68.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.047 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds