Wall clock time and date at job start Tue Mar 31 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00142 * 2 1 4 4 N 1.46502 * 109.47533 * 124.99953 * 3 2 1 5 5 C 1.46508 * 119.99393 * 269.99937 * 4 3 2 6 6 C 1.50697 * 109.46779 * 269.99833 * 5 4 3 7 7 H 1.07998 * 120.00656 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99467 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00330 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99621 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99601 * 10 8 6 12 12 H 1.48503 * 109.47134 * 210.00253 * 10 8 6 13 13 H 1.48507 * 109.47077 * 329.99670 * 10 8 6 14 14 C 1.34769 * 120.00483 * 89.99414 * 4 3 2 15 15 O 1.21277 * 120.00403 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99896 * 0.02562 * 14 4 3 17 17 N 1.46497 * 109.47058 * 179.97438 * 16 14 4 18 18 C 1.31467 * 120.00055 * 240.25484 * 17 16 14 19 19 C 1.41593 * 119.68679 * 173.72621 * 18 17 16 20 20 C 1.35517 * 119.53414 * 179.97438 * 19 18 17 21 21 C 1.46368 * 118.95135 * 359.97438 * 20 19 18 22 22 C 1.43206 * 120.31662 * 179.72325 * 21 20 19 23 23 N 9.64118 * 145.99661 * 51.00816 * 3 1 2 24 24 C 1.37808 * 119.37251 * 0.02562 * 21 20 19 25 25 N 1.35492 * 120.40123 * 359.97438 * 24 21 20 26 26 H 0.96999 * 119.44751 * 179.97438 * 25 24 21 27 27 H 1.08000 * 119.99631 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99835 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.99918 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47305 * 4.99253 * 3 2 1 31 31 H 1.09003 * 109.47028 * 244.99190 * 3 2 1 32 32 H 1.08995 * 109.47298 * 29.99885 * 5 4 3 33 33 H 1.08998 * 109.46505 * 149.99743 * 5 4 3 34 34 H 0.97001 * 119.99955 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46853 * 60.00148 * 16 14 4 36 36 H 1.08996 * 109.47303 * 299.99849 * 16 14 4 37 37 H 1.08004 * 120.23110 * 359.95410 * 19 18 17 38 38 H 1.08004 * 120.52263 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.80720 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3040 3.8370 1.6366 8 6 2.5191 4.0668 3.6084 9 7 1.9606 3.4659 4.6362 10 14 2.8735 5.8996 3.6773 11 1 1.7011 6.6503 3.1608 12 1 3.1380 6.3001 5.0827 13 1 4.0636 6.2053 2.8433 14 6 4.2496 0.8662 0.9825 15 8 5.0196 0.8880 1.9193 16 6 4.6972 0.3182 -0.3480 17 7 6.0918 -0.1201 -0.2515 18 6 7.0074 0.4269 -1.0201 19 6 8.3710 0.0961 -0.8305 20 6 9.3123 0.6614 -1.6249 21 6 8.8906 1.6031 -2.6631 22 6 9.8612 2.2220 -3.5150 23 7 10.6318 2.7101 -4.1907 24 6 7.5514 1.8933 -2.8088 25 7 6.6321 1.3131 -2.0001 26 1 5.6931 1.5276 -2.1147 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0894 31 1 2.6214 1.4025 -0.9313 32 1 1.4887 1.6968 2.5458 33 1 3.0988 1.3605 3.2259 34 1 1.7316 3.9747 5.4297 35 1 4.6127 1.0951 -1.1079 36 1 4.0681 -0.5285 -0.6225 37 1 8.6590 -0.6016 -0.0580 38 1 10.3570 0.4208 -1.4940 39 1 7.2325 2.5874 -3.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359435312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:30 Heat of formation + Delta-G solvation = 86.975057 kcal Electronic energy + Delta-G solvation = -22963.633606 eV Core-core repulsion = 19487.512823 eV Total energy + Delta-G solvation = -3476.120782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.74993 -39.01345 -36.94624 -35.73340 -34.87345 -33.57304 -33.22479 -32.10912 -30.69014 -28.31926 -26.77682 -25.43510 -24.36216 -23.25320 -21.88174 -20.39795 -20.01306 -18.49638 -17.72793 -16.96580 -16.48859 -16.27179 -16.17358 -15.36490 -15.11813 -14.78804 -14.54793 -14.49476 -14.11071 -13.73315 -13.55907 -13.34334 -13.07655 -12.64526 -12.60854 -12.45729 -11.99183 -11.78722 -11.75182 -11.29642 -11.09777 -10.93192 -10.72352 -10.62915 -10.39515 -10.22595 -9.72520 -9.59245 -9.24758 -8.92606 -8.46699 -7.73104 -7.53469 -6.07354 -4.12566 0.61630 1.10066 2.32461 2.37938 2.66309 2.81447 3.26282 3.33176 3.35293 3.39814 3.47629 3.78450 3.90941 4.13544 4.31320 4.42314 4.68512 4.89076 4.99138 5.01046 5.22249 5.27283 5.28089 5.34655 5.48008 5.57357 5.63243 5.93098 5.94457 6.01209 6.10557 6.35479 6.70720 6.73031 6.84841 7.04586 7.35579 7.42634 7.50486 7.83086 7.89829 8.19772 8.36778 8.86755 9.07460 9.52539 11.00710 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.003767 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.502935 B = 7432.095038 C = 8705.843515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.249 3.751 6 C -0.528 4.528 7 H 0.055 0.945 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.515 6.515 16 C 0.029 3.971 17 N -0.543 5.543 18 C 0.389 3.611 19 C -0.129 4.129 20 C -0.025 4.025 21 C -0.159 4.159 22 C 0.276 3.724 23 N -0.437 5.437 24 C 0.210 3.790 25 N -0.631 5.631 26 H 0.419 0.581 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.158 0.842 38 H 0.142 0.858 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -6.765 -17.210 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.013 3.987 4 N -0.329 5.329 5 C 0.130 3.870 6 C -0.567 4.567 7 H 0.073 0.927 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.291 3.709 15 O -0.390 6.390 16 C -0.105 4.105 17 N -0.267 5.267 18 C 0.121 3.879 19 C -0.151 4.151 20 C -0.050 4.050 21 C -0.172 4.172 22 C -0.038 4.038 23 N -0.114 5.114 24 C 0.074 3.926 25 N -0.249 5.249 26 H 0.260 0.740 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.153 -6.681 -16.712 19.021 hybrid contribution -1.009 1.579 -0.264 1.893 sum 5.145 -5.102 -16.976 18.458 Atomic orbital electron populations 1.23827 0.95834 1.01811 1.00328 1.23437 0.96454 0.99019 1.00118 1.20558 0.93153 0.95509 0.89456 1.48257 1.10285 1.60722 1.13652 1.19266 0.95381 0.93660 0.78698 1.21402 1.40686 0.93334 1.01229 0.92656 1.24933 0.95064 0.98731 0.95317 1.69929 1.41922 1.36139 1.05148 0.86514 0.78518 0.85017 0.77454 1.20640 1.21005 1.19988 1.20075 0.82510 0.78998 0.89310 1.90693 1.52376 1.54634 1.41269 1.21918 0.92184 0.99804 0.96551 1.73464 1.00461 1.27508 1.25255 1.20289 0.95738 0.85873 0.85994 1.20647 0.87739 1.04202 1.02478 1.21922 1.00086 0.92084 0.90904 1.16125 0.88534 1.09101 1.03468 1.25050 0.93315 0.92837 0.92609 1.81256 1.09012 1.10399 1.10725 1.22073 0.88537 0.91203 0.90820 1.42954 1.11045 1.40784 1.30165 0.74047 0.88269 0.88725 0.87723 0.89359 0.91416 0.94934 0.93866 0.92665 0.93388 0.87811 0.82450 0.83988 0.81331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.02 0.42 -1.78 16 2 C -0.17 -2.28 9.74 -36.03 -0.35 -2.63 16 3 C 0.14 2.06 5.65 -5.19 -0.03 2.03 16 4 N -0.60 -12.21 2.44 -176.44 -0.43 -12.64 16 5 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 6 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.51 10.45 7.74 -10.99 -0.09 10.36 16 15 O -0.52 -13.35 16.01 5.56 0.09 -13.26 16 16 C 0.03 0.42 5.35 -5.20 -0.03 0.40 16 17 N -0.54 -8.25 10.03 -61.55 -0.62 -8.86 16 18 C 0.39 4.53 7.46 -156.45 -1.17 3.36 16 19 C -0.13 -1.25 9.97 -39.28 -0.39 -1.65 16 20 C -0.02 -0.19 10.05 -37.29 -0.37 -0.56 16 21 C -0.16 -1.19 5.88 -104.86 -0.62 -1.81 16 22 C 0.28 2.55 15.38 -22.50 -0.35 2.20 16 23 N -0.44 -5.15 18.53 41.81 0.77 -4.38 16 24 C 0.21 1.27 10.94 -16.09 -0.18 1.09 16 25 N -0.63 -5.11 5.20 -11.70 -0.06 -5.17 16 26 H 0.42 2.80 6.10 -40.82 -0.25 2.55 16 27 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 28 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.10 1.32 7.83 -52.48 -0.41 0.91 16 30 H 0.09 1.39 7.72 -51.93 -0.40 0.98 16 31 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.05 0.53 4.63 -51.92 -0.24 0.29 16 36 H 0.10 1.30 7.78 -51.93 -0.40 0.90 16 37 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -37.21 351.04 -7.33 -44.54 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.49 Total: -0.47 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -3.60 Total: 4.04 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.40 Total: -56.72 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.21 -7.33 -44.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.513 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds