Wall clock time and date at job start Tue Mar 31 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00142 * 2 1 4 4 N 1.46502 * 109.47533 * 124.99953 * 3 2 1 5 5 C 1.46508 * 119.99393 * 269.99937 * 4 3 2 6 6 C 1.50697 * 109.46779 * 269.99833 * 5 4 3 7 7 H 1.07998 * 120.00656 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99467 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00330 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99621 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99601 * 10 8 6 12 12 H 1.48503 * 109.47134 * 210.00253 * 10 8 6 13 13 H 1.48507 * 109.47077 * 329.99670 * 10 8 6 14 14 C 1.34769 * 120.00483 * 89.99414 * 4 3 2 15 15 O 1.21277 * 120.00403 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99896 * 0.02562 * 14 4 3 17 17 N 1.46497 * 109.47058 * 179.97438 * 16 14 4 18 18 C 1.31467 * 120.00055 * 240.25484 * 17 16 14 19 19 C 1.41593 * 119.68679 * 173.72621 * 18 17 16 20 20 C 1.35517 * 119.53414 * 179.97438 * 19 18 17 21 21 C 1.46368 * 118.95135 * 359.97438 * 20 19 18 22 22 C 1.43206 * 120.31662 * 179.72325 * 21 20 19 23 23 N 9.64118 * 145.99661 * 51.00816 * 3 1 2 24 24 C 1.37808 * 119.37251 * 0.02562 * 21 20 19 25 25 N 1.35492 * 120.40123 * 359.97438 * 24 21 20 26 26 H 0.96999 * 119.44751 * 179.97438 * 25 24 21 27 27 H 1.08000 * 119.99631 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99835 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.99918 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47305 * 4.99253 * 3 2 1 31 31 H 1.09003 * 109.47028 * 244.99190 * 3 2 1 32 32 H 1.08995 * 109.47298 * 29.99885 * 5 4 3 33 33 H 1.08998 * 109.46505 * 149.99743 * 5 4 3 34 34 H 0.97001 * 119.99955 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46853 * 60.00148 * 16 14 4 36 36 H 1.08996 * 109.47303 * 299.99849 * 16 14 4 37 37 H 1.08004 * 120.23110 * 359.95410 * 19 18 17 38 38 H 1.08004 * 120.52263 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.80720 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3040 3.8370 1.6366 8 6 2.5191 4.0668 3.6084 9 7 1.9606 3.4659 4.6362 10 14 2.8735 5.8996 3.6773 11 1 1.7011 6.6503 3.1608 12 1 3.1380 6.3001 5.0827 13 1 4.0636 6.2053 2.8433 14 6 4.2496 0.8662 0.9825 15 8 5.0196 0.8880 1.9193 16 6 4.6972 0.3182 -0.3480 17 7 6.0918 -0.1201 -0.2515 18 6 7.0074 0.4269 -1.0201 19 6 8.3710 0.0961 -0.8305 20 6 9.3123 0.6614 -1.6249 21 6 8.8906 1.6031 -2.6631 22 6 9.8612 2.2220 -3.5150 23 7 10.6318 2.7101 -4.1907 24 6 7.5514 1.8933 -2.8088 25 7 6.6321 1.3131 -2.0001 26 1 5.6931 1.5276 -2.1147 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0894 31 1 2.6214 1.4025 -0.9313 32 1 1.4887 1.6968 2.5458 33 1 3.0988 1.3605 3.2259 34 1 1.7316 3.9747 5.4297 35 1 4.6127 1.0951 -1.1079 36 1 4.0681 -0.5285 -0.6225 37 1 8.6590 -0.6016 -0.0580 38 1 10.3570 0.4208 -1.4940 39 1 7.2325 2.5874 -3.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359435312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:29 Heat of formation + Delta-G solvation = 60.948405 kcal Electronic energy + Delta-G solvation = -22964.762206 eV Core-core repulsion = 19487.512823 eV Total energy + Delta-G solvation = -3477.249383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55916 -40.51220 -37.76165 -37.19369 -35.84389 -35.07924 -34.27703 -33.65238 -31.67386 -29.87481 -28.04919 -26.84421 -25.18437 -24.74281 -23.09031 -21.13658 -21.10749 -19.92551 -18.72345 -18.46062 -17.90108 -17.60627 -17.09780 -16.69312 -16.35151 -16.05912 -15.80273 -15.44853 -15.15517 -14.70722 -14.53304 -14.43540 -14.28688 -14.09159 -13.92387 -13.52713 -13.36397 -13.19144 -12.97272 -12.84742 -12.57459 -12.45098 -12.25103 -12.19377 -11.68637 -11.56053 -11.13908 -10.69214 -10.64854 -10.38007 -10.24472 -9.45705 -8.37237 -8.22494 -6.37733 0.01477 0.32432 1.32967 1.35810 1.39177 1.48831 1.60637 1.82272 1.97501 2.01285 2.34525 2.52505 2.84368 3.07202 3.07884 3.38666 3.73011 3.78709 3.91168 4.07328 4.10400 4.24873 4.28755 4.40122 4.49703 4.61059 4.84320 4.99555 5.03221 5.06882 5.23036 5.25228 5.35357 5.51981 5.64257 5.72926 5.76662 5.96365 6.02444 6.05993 6.65141 6.69049 6.76759 7.04358 7.28668 7.52160 8.84841 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.003767 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.502935 B = 7432.095038 C = 8705.843515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.600 5.600 5 C 0.265 3.735 6 C -0.541 4.541 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.495 3.505 15 O -0.583 6.583 16 C 0.048 3.952 17 N -0.608 5.608 18 C 0.398 3.602 19 C -0.166 4.166 20 C 0.006 3.994 21 C -0.173 4.173 22 C 0.304 3.696 23 N -0.483 5.483 24 C 0.235 3.765 25 N -0.622 5.622 26 H 0.428 0.572 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.020 0.980 33 H -0.010 1.010 34 H 0.267 0.733 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -5.580 -20.297 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.144 3.856 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.283 3.717 15 O -0.462 6.462 16 C -0.085 4.085 17 N -0.335 5.335 18 C 0.132 3.868 19 C -0.188 4.188 20 C -0.019 4.019 21 C -0.186 4.186 22 C -0.009 4.009 23 N -0.161 5.161 24 C 0.098 3.902 25 N -0.240 5.240 26 H 0.271 0.729 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.038 0.962 33 H 0.008 0.992 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.170 0.830 38 H 0.182 0.818 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.135 -5.494 -19.885 21.523 hybrid contribution -0.959 1.204 0.614 1.657 sum 5.177 -4.291 -19.271 20.410 Atomic orbital electron populations 1.24047 0.95584 1.02841 0.98256 1.23357 0.96827 0.98413 1.01925 1.20857 0.92751 0.96265 0.89000 1.48247 1.11615 1.60136 1.13154 1.18657 0.93672 0.92731 0.80542 1.21693 1.40530 0.94274 1.01441 0.92598 1.25892 0.94696 1.03857 0.94843 1.70064 1.42894 1.38140 1.05805 0.85404 0.78910 0.78996 0.77418 1.18591 1.20901 1.19649 1.21324 0.81531 0.77677 0.91198 1.90643 1.54190 1.57292 1.44097 1.21698 0.92822 1.01151 0.92846 1.73482 1.00874 1.30527 1.28615 1.20499 0.95783 0.85045 0.85438 1.20646 0.87547 1.06376 1.04240 1.22178 1.00778 0.89876 0.89035 1.16140 0.89025 1.09734 1.03678 1.25039 0.92545 0.91678 0.91656 1.81304 1.10305 1.12099 1.12370 1.22708 0.87594 0.89872 0.89995 1.42989 1.12053 1.39698 1.29250 0.72950 0.88209 0.86760 0.86967 0.90275 0.87149 0.96152 0.99173 0.92447 0.89724 0.85960 0.82987 0.81842 0.76791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 14.32 67.78 0.97 -2.86 16 2 C -0.19 -4.69 9.74 25.65 0.25 -4.44 16 3 C 0.13 3.83 5.65 85.63 0.48 4.32 16 4 N -0.60 -25.03 2.44 -830.52 -2.03 -27.06 16 5 C 0.27 14.45 5.16 85.63 0.44 14.89 16 6 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 7 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 8 C 0.01 0.35 5.46 84.66 0.46 0.81 16 9 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 10 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.49 20.87 7.74 87.66 0.68 21.55 16 15 O -0.58 -31.93 16.01 -3.02 -0.05 -31.97 16 16 C 0.05 1.33 5.35 85.63 0.46 1.79 16 17 N -0.61 -18.28 10.03 -348.64 -3.50 -21.78 16 18 C 0.40 8.69 7.46 134.51 1.00 9.69 16 19 C -0.17 -3.07 9.97 22.47 0.22 -2.84 16 20 C 0.01 0.08 10.05 23.76 0.24 0.32 16 21 C -0.17 -2.00 5.88 -20.02 -0.12 -2.12 16 22 C 0.30 4.73 15.38 88.34 1.36 6.09 16 23 N -0.48 -10.44 18.53 19.00 0.35 -10.09 16 24 C 0.24 1.80 10.94 84.03 0.92 2.72 16 25 N -0.62 -7.95 5.20 -190.94 -0.99 -8.94 16 26 H 0.43 3.95 6.10 -92.71 -0.57 3.38 16 27 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 28 H 0.11 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.11 2.67 7.83 -2.91 -0.02 2.65 16 30 H 0.08 2.41 7.72 -2.39 -0.02 2.39 16 31 H 0.11 2.18 6.44 -2.39 -0.02 2.16 16 32 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 33 H -0.01 -0.63 7.42 -2.39 -0.02 -0.65 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.09 1.59 4.63 -2.38 -0.01 1.58 16 36 H 0.12 2.83 7.78 -2.39 -0.02 2.81 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.22 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -87.59 351.04 4.23 -83.35 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.52 Total: 7.07 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 7.61 Total: 19.22 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -5.88 Total: -124.19 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.05 Total: -31.97 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -87.59 4.23 -83.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.302 kcal (2) G-P(sol) polarization free energy of solvation -87.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds