Wall clock time and date at job start Tue Mar 31 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99970 * 2 1 4 4 O 1.20826 * 120.00078 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00126 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.67840 * 356.86899 * 5 3 2 7 7 C 1.53294 * 109.71231 * 236.33453 * 5 3 2 8 8 O 1.42968 * 109.22334 * 187.95761 * 7 5 3 9 9 C 1.42959 * 114.16428 * 62.57926 * 8 7 5 10 10 C 1.53713 * 109.15177 * 297.29014 * 9 8 7 11 11 N 1.47151 * 109.67881 * 117.39225 * 5 3 2 12 12 C 1.34783 * 120.98394 * 350.26796 * 11 5 3 13 13 O 1.21273 * 119.99835 * 354.32718 * 12 11 5 14 14 C 1.50705 * 119.99629 * 174.32184 * 12 11 5 15 15 H 1.08999 * 109.46878 * 40.00375 * 14 12 11 16 16 N 1.46903 * 109.46436 * 160.00430 * 14 12 11 17 17 C 1.52999 * 109.46820 * 280.00315 * 14 12 11 18 18 C 1.53002 * 109.46641 * 175.00788 * 17 14 12 19 19 C 1.50701 * 109.47147 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99891 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00197 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99775 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47235 * 90.00110 * 23 21 19 25 25 H 1.48503 * 109.46742 * 209.99842 * 23 21 19 26 26 H 1.48495 * 109.47454 * 329.99533 * 23 21 19 27 27 H 1.09000 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47333 * 299.99978 * 1 2 3 29 29 H 1.09000 * 109.47640 * 59.99658 * 1 2 3 30 30 H 1.09004 * 109.51375 * 307.88160 * 7 5 3 31 31 H 1.09003 * 109.51460 * 68.03357 * 7 5 3 32 32 H 1.09001 * 109.51587 * 57.34905 * 9 8 7 33 33 H 1.08999 * 109.50842 * 177.50067 * 9 8 7 34 34 H 1.09001 * 109.83948 * 292.86123 * 10 9 8 35 35 H 1.08993 * 109.75156 * 172.16940 * 10 9 8 36 36 H 1.00896 * 111.00404 * 60.00058 * 16 14 12 37 37 H 1.00904 * 110.99615 * 183.95308 * 16 14 12 38 38 H 1.09002 * 109.46885 * 294.99843 * 17 14 12 39 39 H 1.08994 * 109.47412 * 55.00245 * 17 14 12 40 40 H 1.09004 * 109.46747 * 299.99714 * 18 17 14 41 41 H 1.08994 * 109.47661 * 59.99609 * 18 17 14 42 42 H 0.96999 * 120.00430 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9865 0.2707 0.0570 7 6 4.0403 2.1011 1.2017 8 8 5.4478 2.3263 1.0921 9 6 5.8315 3.0835 -0.0582 10 6 5.4504 2.3026 -1.3261 11 7 4.0282 1.9372 -1.2296 12 6 3.1752 2.1963 -2.2404 13 8 2.0329 1.7922 -2.1885 14 6 3.6409 2.9882 -3.4351 15 1 4.6532 2.6837 -3.7006 16 7 2.7410 2.7383 -4.5690 17 6 3.6297 4.4796 -3.0940 18 6 4.2192 5.2740 -4.2612 19 6 4.2089 6.7430 -3.9252 20 1 3.8203 7.0767 -2.9743 21 6 4.6954 7.6610 -4.8315 22 7 4.6860 8.9431 -4.5384 23 14 5.3682 7.0838 -6.4758 24 1 4.2706 7.0503 -7.4754 25 1 6.4264 8.0197 -6.9336 26 1 5.9425 5.7227 -6.3254 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.5183 3.0580 1.2141 31 1 3.8290 1.5583 2.1231 32 1 5.3162 4.0440 -0.0503 33 1 6.9090 3.2475 -0.0432 34 1 6.0571 1.4001 -1.4011 35 1 5.6102 2.9269 -2.2052 36 1 1.7956 3.0126 -4.3477 37 1 3.0682 3.2073 -5.4004 38 1 2.6045 4.8037 -2.9150 39 1 4.2269 4.6521 -2.1987 40 1 5.2444 4.9499 -4.4403 41 1 3.6220 5.1016 -5.1566 42 1 5.0279 9.5890 -5.1761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424183333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:10 Heat of formation + Delta-G solvation = -151.507776 kcal Electronic energy + Delta-G solvation = -26216.321614 eV Core-core repulsion = 22390.257769 eV Total energy + Delta-G solvation = -3826.063845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33478 -39.58745 -38.59708 -36.41765 -35.72653 -34.97807 -32.89273 -32.11796 -30.40000 -28.73567 -27.71785 -26.83179 -25.06155 -23.86531 -22.37947 -21.33450 -20.37762 -19.10172 -18.14180 -17.51913 -17.08434 -16.81264 -16.38757 -16.00366 -15.84450 -15.70288 -15.25970 -14.69141 -14.52445 -14.30265 -14.11500 -13.82324 -13.48349 -13.14220 -13.02211 -12.77970 -12.70749 -12.49227 -12.04639 -11.92996 -11.69215 -11.36002 -11.25985 -11.04167 -10.70466 -10.58561 -10.40188 -10.23004 -10.16266 -9.92084 -9.47046 -9.36449 -8.83427 -8.66261 -8.43281 -6.15276 -4.15434 2.00249 2.53976 2.64792 2.85032 3.21670 3.29959 3.30411 3.55286 4.24917 4.33642 4.47766 4.63667 4.73539 4.74762 4.89196 4.95156 4.98622 5.10584 5.16306 5.18824 5.23161 5.32604 5.37674 5.46473 5.52448 5.53518 5.64031 6.02965 6.04343 6.25296 6.44926 6.57100 6.73177 7.00415 7.03239 7.14219 7.32560 7.60415 7.68783 7.82092 8.10087 8.40446 8.88666 9.45454 10.97875 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.004381 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.282023 B = 6389.252948 C = 7084.601140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.359 6.359 3 C 0.481 3.519 4 O -0.491 6.491 5 C 0.121 3.879 6 H 0.108 0.892 7 C 0.061 3.939 8 O -0.369 6.369 9 C 0.041 3.959 10 C 0.073 3.927 11 N -0.612 5.612 12 C 0.529 3.471 13 O -0.509 6.509 14 C 0.077 3.923 15 H 0.100 0.900 16 N -0.830 5.830 17 C -0.130 4.130 18 C -0.009 4.009 19 C -0.525 4.525 20 H 0.071 0.929 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.349 0.651 37 H 0.352 0.648 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.012 0.988 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -18.173 9.453 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.276 6.276 3 C 0.323 3.677 4 O -0.377 6.377 5 C 0.016 3.984 6 H 0.126 0.874 7 C -0.017 4.017 8 O -0.287 6.287 9 C -0.037 4.037 10 C -0.049 4.049 11 N -0.351 5.351 12 C 0.319 3.681 13 O -0.384 6.384 14 C -0.038 4.038 15 H 0.118 0.882 16 N -0.362 5.362 17 C -0.169 4.169 18 C -0.046 4.046 19 C -0.562 4.562 20 H 0.089 0.911 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.007 -18.746 9.611 21.066 hybrid contribution -0.096 1.081 -1.146 1.578 sum -0.103 -17.665 8.465 19.589 Atomic orbital electron populations 1.23171 0.76088 1.03079 1.02658 1.86385 1.23601 1.33041 1.84527 1.22431 0.90339 0.82091 0.72800 1.90684 1.66342 1.36112 1.44563 1.21358 0.89512 0.99691 0.87881 0.87398 1.22861 0.82959 1.00051 0.95801 1.87994 1.21635 1.74470 1.44625 1.23219 1.02128 0.94276 0.84047 1.22729 0.80038 1.01213 1.00916 1.48157 1.10246 1.61553 1.15149 1.21020 0.84940 0.78682 0.83478 1.90613 1.18986 1.51253 1.77505 1.21507 0.97957 0.94998 0.89331 0.88246 1.58751 1.06134 1.66341 1.05015 1.22232 1.02460 0.90940 1.01293 1.19572 0.95530 0.96453 0.93081 1.21033 1.41840 0.88934 1.04434 0.91051 1.25033 0.95202 0.94750 0.98344 1.69908 1.46605 1.01030 1.36218 0.86781 0.79178 0.78984 0.84326 1.20218 1.21273 1.18988 0.88533 0.92323 0.91462 0.90838 0.86997 0.91289 0.86712 0.89811 0.87143 0.83711 0.83269 0.91829 0.91878 0.96344 0.97018 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.36 -4.95 10.56 -41.99 -0.44 -5.39 16 3 C 0.48 7.29 4.38 36.01 0.16 7.45 16 4 O -0.49 -9.01 14.69 -26.68 -0.39 -9.40 16 5 C 0.12 1.50 3.53 -68.57 -0.24 1.26 16 6 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 7 C 0.06 0.67 6.24 37.31 0.23 0.90 16 8 O -0.37 -4.05 10.74 -35.23 -0.38 -4.43 16 9 C 0.04 0.41 7.00 37.53 0.26 0.67 16 10 C 0.07 0.76 6.16 -3.31 -0.02 0.74 16 11 N -0.61 -8.24 3.01 -165.80 -0.50 -8.73 16 12 C 0.53 8.74 6.65 -10.98 -0.07 8.67 16 13 O -0.51 -9.81 12.38 -21.32 -0.26 -10.07 16 14 C 0.08 1.23 2.35 -68.86 -0.16 1.06 16 15 H 0.10 1.40 6.60 -51.93 -0.34 1.06 16 16 N -0.83 -13.29 8.94 -5.65 -0.05 -13.34 16 17 C -0.13 -2.42 4.54 -26.73 -0.12 -2.54 16 18 C -0.01 -0.19 3.81 -27.88 -0.11 -0.30 16 19 C -0.52 -14.28 9.66 -34.44 -0.33 -14.61 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 23 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 31 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.16 5.13 -51.93 -0.27 0.89 16 36 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 37 H 0.35 5.36 7.55 -39.29 -0.30 5.07 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.14 7.40 -51.93 -0.38 0.76 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -34.59 339.02 -6.38 -40.97 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.13 Total: 8.86 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 0.56 Total: 6.68 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.22 Total: -48.31 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.48 Total: -29.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.59 -6.38 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424183333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.539 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds