Wall clock time and date at job start Tue Mar 31 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99970 * 2 1 4 4 O 1.20826 * 120.00078 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00126 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.67840 * 356.86899 * 5 3 2 7 7 C 1.53294 * 109.71231 * 236.33453 * 5 3 2 8 8 O 1.42968 * 109.22334 * 187.95761 * 7 5 3 9 9 C 1.42959 * 114.16428 * 62.57926 * 8 7 5 10 10 C 1.53713 * 109.15177 * 297.29014 * 9 8 7 11 11 N 1.47151 * 109.67881 * 117.39225 * 5 3 2 12 12 C 1.34783 * 120.98394 * 350.26796 * 11 5 3 13 13 O 1.21273 * 119.99835 * 354.32718 * 12 11 5 14 14 C 1.50705 * 119.99629 * 174.32184 * 12 11 5 15 15 H 1.08999 * 109.46878 * 40.00375 * 14 12 11 16 16 N 1.46903 * 109.46436 * 160.00430 * 14 12 11 17 17 C 1.52999 * 109.46820 * 280.00315 * 14 12 11 18 18 C 1.53002 * 109.46641 * 175.00788 * 17 14 12 19 19 C 1.50701 * 109.47147 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99891 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00197 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99775 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47235 * 90.00110 * 23 21 19 25 25 H 1.48503 * 109.46742 * 209.99842 * 23 21 19 26 26 H 1.48495 * 109.47454 * 329.99533 * 23 21 19 27 27 H 1.09000 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47333 * 299.99978 * 1 2 3 29 29 H 1.09000 * 109.47640 * 59.99658 * 1 2 3 30 30 H 1.09004 * 109.51375 * 307.88160 * 7 5 3 31 31 H 1.09003 * 109.51460 * 68.03357 * 7 5 3 32 32 H 1.09001 * 109.51587 * 57.34905 * 9 8 7 33 33 H 1.08999 * 109.50842 * 177.50067 * 9 8 7 34 34 H 1.09001 * 109.83948 * 292.86123 * 10 9 8 35 35 H 1.08993 * 109.75156 * 172.16940 * 10 9 8 36 36 H 1.00896 * 111.00404 * 60.00058 * 16 14 12 37 37 H 1.00904 * 110.99615 * 183.95308 * 16 14 12 38 38 H 1.09002 * 109.46885 * 294.99843 * 17 14 12 39 39 H 1.08994 * 109.47412 * 55.00245 * 17 14 12 40 40 H 1.09004 * 109.46747 * 299.99714 * 18 17 14 41 41 H 1.08994 * 109.47661 * 59.99609 * 18 17 14 42 42 H 0.96999 * 120.00430 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9865 0.2707 0.0570 7 6 4.0403 2.1011 1.2017 8 8 5.4478 2.3263 1.0921 9 6 5.8315 3.0835 -0.0582 10 6 5.4504 2.3026 -1.3261 11 7 4.0282 1.9372 -1.2296 12 6 3.1752 2.1963 -2.2404 13 8 2.0329 1.7922 -2.1885 14 6 3.6409 2.9882 -3.4351 15 1 4.6532 2.6837 -3.7006 16 7 2.7410 2.7383 -4.5690 17 6 3.6297 4.4796 -3.0940 18 6 4.2192 5.2740 -4.2612 19 6 4.2089 6.7430 -3.9252 20 1 3.8203 7.0767 -2.9743 21 6 4.6954 7.6610 -4.8315 22 7 4.6860 8.9431 -4.5384 23 14 5.3682 7.0838 -6.4758 24 1 4.2706 7.0503 -7.4754 25 1 6.4264 8.0197 -6.9336 26 1 5.9425 5.7227 -6.3254 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.5183 3.0580 1.2141 31 1 3.8290 1.5583 2.1231 32 1 5.3162 4.0440 -0.0503 33 1 6.9090 3.2475 -0.0432 34 1 6.0571 1.4001 -1.4011 35 1 5.6102 2.9269 -2.2052 36 1 1.7956 3.0126 -4.3477 37 1 3.0682 3.2073 -5.4004 38 1 2.6045 4.8037 -2.9150 39 1 4.2269 4.6521 -2.1987 40 1 5.2444 4.9499 -4.4403 41 1 3.6220 5.1016 -5.1566 42 1 5.0279 9.5890 -5.1761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424183333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:09 Heat of formation + Delta-G solvation = -178.167115 kcal Electronic energy + Delta-G solvation = -26217.477649 eV Core-core repulsion = 22390.257769 eV Total energy + Delta-G solvation = -3827.219881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.44422 -40.72854 -39.62619 -37.61464 -37.15436 -36.02703 -34.85767 -33.07608 -32.13976 -29.75491 -28.75247 -28.22690 -26.14783 -25.33936 -23.35517 -22.64837 -21.90455 -20.24820 -19.39304 -18.84878 -18.55718 -18.13308 -17.43086 -17.00612 -16.93215 -16.72074 -16.32625 -16.25980 -15.82007 -15.61776 -15.41540 -15.01177 -14.76952 -14.66379 -14.34946 -14.14268 -13.97990 -13.54186 -13.37438 -13.05033 -12.93238 -12.69187 -12.51448 -12.26517 -12.03017 -11.94135 -11.78118 -11.69557 -11.59091 -11.43543 -11.32464 -10.79656 -10.75928 -9.85263 -9.75495 -8.30081 -6.36522 0.91006 1.35665 1.39326 1.40366 1.51837 1.58084 1.76766 2.36146 2.72732 3.05505 3.24959 3.47380 3.60850 3.70038 3.75012 3.86696 3.95803 4.01176 4.12315 4.19849 4.26942 4.33089 4.41877 4.47302 4.51527 4.63969 4.65031 4.75917 4.82941 4.90395 5.07173 5.30833 5.37978 5.41886 5.60617 5.84274 5.90163 6.08174 6.23794 6.39864 6.68857 6.71788 6.90211 7.28457 8.86885 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.004381 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.282023 B = 6389.252948 C = 7084.601140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.479 3.521 4 O -0.533 6.533 5 C 0.118 3.882 6 H 0.138 0.862 7 C 0.066 3.934 8 O -0.368 6.368 9 C 0.038 3.962 10 C 0.069 3.931 11 N -0.609 5.609 12 C 0.521 3.479 13 O -0.544 6.544 14 C 0.087 3.913 15 H 0.129 0.871 16 N -0.828 5.828 17 C -0.116 4.116 18 C -0.003 4.003 19 C -0.535 4.535 20 H 0.022 0.978 21 C 0.004 3.996 22 N -0.953 5.953 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.231 1.231 27 H 0.134 0.866 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.141 0.859 32 H 0.046 0.954 33 H 0.145 0.855 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.343 0.657 37 H 0.358 0.642 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.023 0.977 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -21.071 8.656 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.276 6.276 3 C 0.323 3.677 4 O -0.422 6.422 5 C 0.014 3.986 6 H 0.155 0.845 7 C -0.012 4.012 8 O -0.286 6.286 9 C -0.039 4.039 10 C -0.052 4.052 11 N -0.347 5.347 12 C 0.311 3.689 13 O -0.421 6.421 14 C -0.028 4.028 15 H 0.147 0.853 16 N -0.360 5.360 17 C -0.156 4.156 18 C -0.040 4.040 19 C -0.573 4.573 20 H 0.040 0.960 21 C -0.193 4.193 22 N -0.594 5.594 23 Si 0.777 3.223 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.154 1.154 27 H 0.152 0.848 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.159 0.841 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.071 -21.684 8.841 23.509 hybrid contribution -0.796 2.018 -0.768 2.301 sum 1.275 -19.667 8.073 21.297 Atomic orbital electron populations 1.23394 0.74920 1.05292 1.01777 1.86382 1.24853 1.32381 1.84022 1.23003 0.91455 0.81776 0.71440 1.90664 1.67523 1.37475 1.46494 1.21642 0.87807 1.01336 0.87834 0.84482 1.22884 0.82789 0.99040 0.96453 1.88007 1.21274 1.74355 1.44960 1.23342 1.03596 0.93103 0.83822 1.23016 0.78429 1.02771 1.00965 1.48248 1.11200 1.60641 1.14633 1.21103 0.84816 0.78801 0.84222 1.90602 1.20385 1.52790 1.78346 1.21440 0.99444 0.92543 0.89385 0.85312 1.58774 1.05853 1.66156 1.05217 1.22014 1.00279 0.92978 1.00332 1.19487 0.97043 0.93060 0.94417 1.21383 1.41046 0.92274 1.02601 0.95982 1.26084 0.95575 0.94574 1.03074 1.70087 1.48384 1.02798 1.38101 0.85606 0.78471 0.79988 0.78249 1.19611 1.21367 1.15360 0.84757 0.91722 0.93870 0.93320 0.84116 0.93602 0.83756 0.86515 0.87048 0.84417 0.82648 0.94931 0.91821 0.94181 0.95904 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.56 113.37 1.20 2.06 16 2 O -0.36 -9.60 10.56 -48.79 -0.52 -10.11 16 3 C 0.48 14.35 4.38 71.24 0.31 14.66 16 4 O -0.53 -20.15 14.69 29.55 0.43 -19.72 16 5 C 0.12 2.73 3.53 44.22 0.16 2.89 16 6 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 7 C 0.07 1.35 6.24 72.08 0.45 1.80 16 8 O -0.37 -7.20 10.74 -148.98 -1.60 -8.80 16 9 C 0.04 0.69 7.00 72.22 0.51 1.20 16 10 C 0.07 1.22 6.16 86.49 0.53 1.75 16 11 N -0.61 -15.32 3.01 -796.85 -2.40 -17.72 16 12 C 0.52 16.74 6.65 87.66 0.58 17.32 16 13 O -0.54 -21.04 12.38 22.70 0.28 -20.76 16 14 C 0.09 2.62 2.35 44.17 0.10 2.72 16 15 H 0.13 3.14 6.60 -2.39 -0.02 3.13 16 16 N -0.83 -25.25 8.94 -171.79 -1.54 -26.78 16 17 C -0.12 -4.31 4.54 30.59 0.14 -4.18 16 18 C 0.00 -0.11 3.81 29.85 0.11 0.00 16 19 C -0.54 -29.72 9.66 25.60 0.25 -29.48 16 20 H 0.02 1.39 7.99 -2.91 -0.02 1.36 16 21 C 0.00 0.21 5.47 84.65 0.46 0.67 16 22 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 23 Si 0.95 41.54 27.47 68.60 1.88 43.42 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 27 H 0.13 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.04 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.05 1.24 7.85 -2.38 -0.02 1.22 16 31 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.97 5.13 -2.39 -0.01 1.95 16 36 H 0.34 11.40 8.58 -89.70 -0.77 10.63 16 37 H 0.36 10.02 7.55 -89.69 -0.68 9.35 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 2.32 7.40 -2.39 -0.02 2.30 16 40 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 41 H 0.02 0.92 6.30 -2.39 -0.02 0.91 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.53 339.02 1.20 -77.33 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.45 Total: 30.35 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 4.80 Total: 11.42 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -3.64 Total: -103.13 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.40 Total: -59.39 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -78.53 1.20 -77.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424183333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.835 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds