Wall clock time and date at job start Tue Mar 31 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45188 * 1 3 3 C 1.34238 * 117.00041 * 2 1 4 4 O 1.20826 * 119.99307 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99957 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.71244 * 2.04556 * 5 3 2 7 7 C 1.52877 * 109.61947 * 241.73609 * 5 3 2 8 8 O 1.42963 * 109.30000 * 188.12179 * 7 5 3 9 9 C 1.42964 * 114.16822 * 62.44557 * 8 7 5 10 10 C 1.53296 * 109.22316 * 297.42021 * 9 8 7 11 11 N 1.47154 * 108.38365 * 52.30661 * 10 9 8 12 12 C 1.34775 * 120.98496 * 129.43943 * 11 10 9 13 13 O 1.21282 * 119.99546 * 174.04784 * 12 11 10 14 14 C 1.50696 * 119.99698 * 354.04498 * 12 11 10 15 15 H 1.08990 * 109.47399 * 319.99875 * 14 12 11 16 16 N 1.46900 * 109.46998 * 199.99653 * 14 12 11 17 17 C 1.53000 * 109.46804 * 80.00293 * 14 12 11 18 18 C 1.53006 * 109.46915 * 184.99606 * 17 14 12 19 19 C 1.50700 * 109.47188 * 179.97438 * 18 17 14 20 20 H 1.07998 * 119.99739 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00090 * 179.72380 * 19 18 17 22 22 N 1.31514 * 119.99872 * 0.27876 * 21 19 18 23 23 Si 1.86804 * 120.00227 * 180.27858 * 21 19 18 24 24 H 1.48501 * 109.46864 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47233 * 120.00005 * 23 21 19 26 26 H 1.48501 * 109.46785 * 240.00347 * 23 21 19 27 27 H 1.08998 * 109.47398 * 299.99694 * 1 2 3 28 28 H 1.09001 * 109.47417 * 60.00221 * 1 2 3 29 29 H 1.09007 * 109.47143 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.58322 * 68.10572 * 7 5 3 31 31 H 1.09005 * 109.40827 * 308.02214 * 7 5 3 32 32 H 1.09001 * 109.51089 * 177.50008 * 9 8 7 33 33 H 1.09001 * 109.50918 * 57.34701 * 9 8 7 34 34 H 1.08994 * 109.68159 * 292.57718 * 10 9 8 35 35 H 1.09001 * 109.67928 * 172.02518 * 10 9 8 36 36 H 1.00899 * 111.00422 * 300.00588 * 16 14 12 37 37 H 1.00905 * 110.99740 * 63.95419 * 16 14 12 38 38 H 1.08998 * 109.47430 * 64.99621 * 17 14 12 39 39 H 1.08999 * 109.47563 * 304.99391 * 17 14 12 40 40 H 1.08998 * 109.47059 * 59.99788 * 18 17 14 41 41 H 1.08998 * 109.47265 * 299.99923 * 18 17 14 42 42 H 0.97011 * 120.00112 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9870 0.2701 -0.0357 7 6 4.0426 1.9830 1.2690 8 8 5.4489 2.2231 1.1762 9 6 5.8256 3.0856 0.1000 10 6 5.4418 2.4291 -1.2310 11 7 4.0225 2.0457 -1.1671 12 6 3.1647 2.3949 -2.1462 13 8 2.0253 1.9795 -2.1308 14 6 3.6212 3.3016 -3.2599 15 1 4.2602 4.0847 -2.8520 16 7 2.4511 3.9112 -3.9059 17 6 4.4064 2.4878 -4.2905 18 6 4.9756 3.4272 -5.3557 19 6 5.7496 2.6258 -6.3705 20 1 5.8273 1.5536 -6.2663 21 6 6.3531 3.2605 -7.4352 22 7 6.2581 4.5661 -7.5622 23 14 7.3060 2.2662 -8.6974 24 1 7.2635 0.8282 -8.3291 25 1 6.6951 2.4527 -10.0380 26 1 8.7172 2.7274 -8.7278 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.8368 1.3561 2.1366 31 1 3.5173 2.9324 1.3728 32 1 6.9026 3.2518 0.1267 33 1 5.3067 4.0390 0.1988 34 1 6.0546 1.5425 -1.3932 35 1 5.5947 3.1359 -2.0465 36 1 1.8426 3.2051 -4.2923 37 1 1.9515 4.5060 -3.2618 38 1 3.7435 1.7626 -4.7624 39 1 5.2233 1.9641 -3.7940 40 1 5.6386 4.1524 -4.8838 41 1 4.1588 3.9510 -5.8522 42 1 6.6825 5.0127 -8.3116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424183336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:14 Heat of formation + Delta-G solvation = -153.463651 kcal Electronic energy + Delta-G solvation = -26005.094226 eV Core-core repulsion = 22178.945568 eV Total energy + Delta-G solvation = -3826.148658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40560 -39.64879 -38.69408 -36.46321 -35.36205 -35.00281 -32.88206 -32.17946 -30.16608 -28.74978 -27.74471 -26.46336 -25.03236 -23.85343 -22.37744 -21.40931 -20.23948 -19.23230 -18.15144 -17.46795 -17.15157 -16.45146 -16.28684 -16.03778 -15.90306 -15.75252 -15.33131 -15.02195 -14.52620 -14.45106 -14.20821 -13.68969 -13.55126 -13.17409 -12.78909 -12.58520 -12.38265 -12.13476 -12.00728 -11.76388 -11.62140 -11.29428 -10.94022 -10.84007 -10.72540 -10.64940 -10.54249 -10.33730 -10.01619 -9.85849 -9.43239 -9.04281 -8.85795 -8.41917 -8.26589 -5.97689 -4.00145 1.97175 2.45616 2.61161 2.83134 3.31547 3.39523 3.43063 3.48092 4.22820 4.45168 4.49768 4.57421 4.70357 4.74535 4.85210 4.90941 4.98332 5.02896 5.14861 5.16037 5.26178 5.37936 5.40693 5.45293 5.48371 5.63554 5.71736 6.03229 6.33099 6.36698 6.56606 6.64932 6.96507 7.08781 7.38644 7.70308 7.71426 7.74679 7.90306 8.05627 8.08086 8.43529 9.07805 9.63568 11.13119 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.003928 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.257023 B = 7127.165479 C = 7800.701085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.359 6.359 3 C 0.483 3.517 4 O -0.492 6.492 5 C 0.115 3.885 6 H 0.109 0.891 7 C 0.064 3.936 8 O -0.369 6.369 9 C 0.042 3.958 10 C 0.072 3.928 11 N -0.609 5.609 12 C 0.486 3.514 13 O -0.527 6.527 14 C 0.085 3.915 15 H 0.100 0.900 16 N -0.804 5.804 17 C -0.098 4.098 18 C 0.032 3.968 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.348 0.652 37 H 0.336 0.664 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.013 0.987 41 H 0.035 0.965 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -5.812 19.467 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.275 6.275 3 C 0.325 3.675 4 O -0.378 6.378 5 C 0.010 3.990 6 H 0.126 0.874 7 C -0.015 4.015 8 O -0.287 6.287 9 C -0.035 4.035 10 C -0.050 4.050 11 N -0.347 5.347 12 C 0.275 3.725 13 O -0.403 6.403 14 C -0.031 4.031 15 H 0.118 0.882 16 N -0.331 5.331 17 C -0.137 4.137 18 C -0.005 4.005 19 C -0.561 4.561 20 H 0.071 0.929 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.035 -5.311 18.953 20.317 hybrid contribution -0.356 -0.947 -0.256 1.044 sum -5.391 -6.259 18.697 20.441 Atomic orbital electron populations 1.23181 0.76050 1.03220 1.02570 1.86407 1.23631 1.33033 1.84462 1.22469 0.90385 0.82024 0.72655 1.90648 1.66451 1.36180 1.44478 1.21285 0.89427 0.98904 0.89398 0.87357 1.22743 0.83026 1.00680 0.95004 1.88012 1.21668 1.68436 1.50546 1.23154 1.02146 0.92748 0.85498 1.22698 0.80072 1.02368 0.99893 1.48332 1.10474 1.55940 1.19990 1.23035 0.85055 0.81323 0.83123 1.90644 1.19578 1.54780 1.75315 1.21863 0.94930 0.95221 0.91102 0.88230 1.59032 1.11963 1.24811 1.37344 1.21743 0.97275 0.98593 0.96046 1.19019 0.95976 0.93687 0.91844 1.21289 1.32313 0.93718 1.08782 0.92916 1.24983 0.96569 0.94829 0.97868 1.69984 1.44496 1.07895 1.30717 0.86599 0.79730 0.80380 0.81642 1.19846 1.21052 1.21063 0.92304 0.91553 0.88400 0.86971 0.91301 0.86599 0.92012 0.89392 0.86695 0.83799 0.85207 0.92727 0.92609 0.96843 0.94626 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.55 101.05 1.07 1.53 16 2 O -0.36 -4.86 10.56 -39.87 -0.42 -5.28 16 3 C 0.48 7.06 4.59 36.00 0.17 7.22 16 4 O -0.49 -8.46 14.37 -26.88 -0.39 -8.85 16 5 C 0.12 1.41 3.51 -68.79 -0.24 1.17 16 6 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 7 C 0.06 0.63 6.24 37.09 0.23 0.87 16 8 O -0.37 -3.78 10.74 -35.23 -0.38 -4.16 16 9 C 0.04 0.38 6.98 37.31 0.26 0.64 16 10 C 0.07 0.78 5.68 -3.53 -0.02 0.76 16 11 N -0.61 -8.19 3.03 -166.30 -0.50 -8.69 16 12 C 0.49 7.95 6.57 -10.99 -0.07 7.88 16 13 O -0.53 -9.91 12.20 -19.60 -0.24 -10.15 16 14 C 0.08 1.41 2.30 -68.87 -0.16 1.26 16 15 H 0.10 1.55 6.81 -51.93 -0.35 1.20 16 16 N -0.80 -13.78 8.44 -5.66 -0.05 -13.83 16 17 C -0.10 -1.92 4.49 -26.73 -0.12 -2.04 16 18 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 32 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 1.29 5.13 -51.93 -0.27 1.03 16 36 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 37 H 0.34 5.21 9.06 -39.29 -0.36 4.86 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.01 6.83 -51.93 -0.35 0.65 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 42 H 0.26 7.25 8.31 -40.81 -0.34 6.91 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -34.45 343.40 -6.77 -41.22 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.25 Total: 7.10 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 0.57 Total: 6.76 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.19 Total: -48.19 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.42 Total: -28.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.45 -6.77 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424183336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.247 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds