Wall clock time and date at job start Tue Mar 31 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45188 * 1 3 3 C 1.34238 * 117.00041 * 2 1 4 4 O 1.20826 * 119.99307 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99957 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.71244 * 2.04556 * 5 3 2 7 7 C 1.52877 * 109.61947 * 241.73609 * 5 3 2 8 8 O 1.42963 * 109.30000 * 188.12179 * 7 5 3 9 9 C 1.42964 * 114.16822 * 62.44557 * 8 7 5 10 10 C 1.53296 * 109.22316 * 297.42021 * 9 8 7 11 11 N 1.47154 * 108.38365 * 52.30661 * 10 9 8 12 12 C 1.34775 * 120.98496 * 129.43943 * 11 10 9 13 13 O 1.21282 * 119.99546 * 174.04784 * 12 11 10 14 14 C 1.50696 * 119.99698 * 354.04498 * 12 11 10 15 15 H 1.08990 * 109.47399 * 319.99875 * 14 12 11 16 16 N 1.46900 * 109.46998 * 199.99653 * 14 12 11 17 17 C 1.53000 * 109.46804 * 80.00293 * 14 12 11 18 18 C 1.53006 * 109.46915 * 184.99606 * 17 14 12 19 19 C 1.50700 * 109.47188 * 179.97438 * 18 17 14 20 20 H 1.07998 * 119.99739 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00090 * 179.72380 * 19 18 17 22 22 N 1.31514 * 119.99872 * 0.27876 * 21 19 18 23 23 Si 1.86804 * 120.00227 * 180.27858 * 21 19 18 24 24 H 1.48501 * 109.46864 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47233 * 120.00005 * 23 21 19 26 26 H 1.48501 * 109.46785 * 240.00347 * 23 21 19 27 27 H 1.08998 * 109.47398 * 299.99694 * 1 2 3 28 28 H 1.09001 * 109.47417 * 60.00221 * 1 2 3 29 29 H 1.09007 * 109.47143 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.58322 * 68.10572 * 7 5 3 31 31 H 1.09005 * 109.40827 * 308.02214 * 7 5 3 32 32 H 1.09001 * 109.51089 * 177.50008 * 9 8 7 33 33 H 1.09001 * 109.50918 * 57.34701 * 9 8 7 34 34 H 1.08994 * 109.68159 * 292.57718 * 10 9 8 35 35 H 1.09001 * 109.67928 * 172.02518 * 10 9 8 36 36 H 1.00899 * 111.00422 * 300.00588 * 16 14 12 37 37 H 1.00905 * 110.99740 * 63.95419 * 16 14 12 38 38 H 1.08998 * 109.47430 * 64.99621 * 17 14 12 39 39 H 1.08999 * 109.47563 * 304.99391 * 17 14 12 40 40 H 1.08998 * 109.47059 * 59.99788 * 18 17 14 41 41 H 1.08998 * 109.47265 * 299.99923 * 18 17 14 42 42 H 0.97011 * 120.00112 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9870 0.2701 -0.0357 7 6 4.0426 1.9830 1.2690 8 8 5.4489 2.2231 1.1762 9 6 5.8256 3.0856 0.1000 10 6 5.4418 2.4291 -1.2310 11 7 4.0225 2.0457 -1.1671 12 6 3.1647 2.3949 -2.1462 13 8 2.0253 1.9795 -2.1308 14 6 3.6212 3.3016 -3.2599 15 1 4.2602 4.0847 -2.8520 16 7 2.4511 3.9112 -3.9059 17 6 4.4064 2.4878 -4.2905 18 6 4.9756 3.4272 -5.3557 19 6 5.7496 2.6258 -6.3705 20 1 5.8273 1.5536 -6.2663 21 6 6.3531 3.2605 -7.4352 22 7 6.2581 4.5661 -7.5622 23 14 7.3060 2.2662 -8.6974 24 1 7.2635 0.8282 -8.3291 25 1 6.6951 2.4527 -10.0380 26 1 8.7172 2.7274 -8.7278 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.8368 1.3561 2.1366 31 1 3.5173 2.9324 1.3728 32 1 6.9026 3.2518 0.1267 33 1 5.3067 4.0390 0.1988 34 1 6.0546 1.5425 -1.3932 35 1 5.5947 3.1359 -2.0465 36 1 1.8426 3.2051 -4.2923 37 1 1.9515 4.5060 -3.2618 38 1 3.7435 1.7626 -4.7624 39 1 5.2233 1.9641 -3.7940 40 1 5.6386 4.1524 -4.8838 41 1 4.1588 3.9510 -5.8522 42 1 6.6825 5.0127 -8.3116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424183336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:14 Heat of formation + Delta-G solvation = -178.907965 kcal Electronic energy + Delta-G solvation = -26006.197574 eV Core-core repulsion = 22178.945568 eV Total energy + Delta-G solvation = -3827.252006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.49855 -40.76364 -39.68692 -37.58871 -36.87453 -36.04682 -34.85259 -33.10219 -31.96798 -29.74062 -28.70508 -28.02303 -26.09509 -25.36176 -23.42255 -22.71331 -21.77330 -20.37596 -19.29714 -18.60556 -18.30669 -18.17120 -17.32608 -17.20004 -16.96430 -16.89652 -16.45478 -16.34910 -16.02373 -15.59684 -15.37775 -15.02925 -14.67203 -14.29910 -14.17452 -14.04185 -13.67014 -13.47710 -13.35145 -12.98425 -12.82687 -12.55968 -12.47802 -12.36111 -12.15652 -11.85576 -11.74380 -11.63308 -11.53830 -11.33593 -11.17254 -10.99097 -10.48774 -9.87575 -9.72491 -8.12990 -6.22950 0.90233 1.28376 1.42619 1.44249 1.55457 1.56031 1.76098 2.45439 2.73008 3.20685 3.24834 3.45642 3.56790 3.67806 3.74962 3.87277 3.93662 4.10601 4.16835 4.21686 4.24160 4.29121 4.42499 4.48010 4.61704 4.71367 4.77571 4.83060 4.89481 5.06604 5.20778 5.34458 5.58186 5.82765 5.85883 5.91621 5.97964 6.07882 6.29714 6.38768 6.64123 6.84573 6.95398 7.45477 8.98288 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.003928 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.257023 B = 7127.165479 C = 7800.701085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.480 3.520 4 O -0.523 6.523 5 C 0.111 3.889 6 H 0.126 0.874 7 C 0.070 3.930 8 O -0.371 6.371 9 C 0.044 3.956 10 C 0.066 3.934 11 N -0.605 5.605 12 C 0.486 3.514 13 O -0.555 6.555 14 C 0.093 3.907 15 H 0.113 0.887 16 N -0.814 5.814 17 C -0.082 4.082 18 C 0.041 3.959 19 C -0.541 4.541 20 H 0.056 0.944 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.284 1.284 26 H -0.277 1.277 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.344 0.656 37 H 0.344 0.656 38 H 0.040 0.960 39 H 0.073 0.927 40 H -0.001 1.001 41 H 0.003 0.997 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -7.237 20.652 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.280 6.280 3 C 0.323 3.677 4 O -0.412 6.412 5 C 0.007 3.993 6 H 0.144 0.856 7 C -0.008 4.008 8 O -0.288 6.288 9 C -0.033 4.033 10 C -0.056 4.056 11 N -0.342 5.342 12 C 0.274 3.726 13 O -0.434 6.434 14 C -0.023 4.023 15 H 0.130 0.870 16 N -0.343 5.343 17 C -0.120 4.120 18 C 0.004 3.996 19 C -0.579 4.579 20 H 0.074 0.926 21 C -0.194 4.194 22 N -0.569 5.569 23 Si 0.783 3.217 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.202 1.202 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.018 0.982 41 H 0.022 0.978 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.740 -6.754 20.173 21.600 hybrid contribution -0.777 -0.508 -0.595 1.103 sum -4.518 -7.262 19.578 21.365 Atomic orbital electron populations 1.23409 0.74768 1.05316 1.01921 1.86403 1.25008 1.32581 1.84056 1.22948 0.91320 0.81800 0.71615 1.90627 1.67378 1.37202 1.45964 1.21587 0.88049 0.99960 0.89735 0.85586 1.22794 0.82810 1.00478 0.94685 1.88024 1.21527 1.68564 1.50702 1.23267 1.03747 0.92232 0.84054 1.22930 0.78571 1.03046 1.01006 1.48357 1.11123 1.55161 1.19575 1.22715 0.84988 0.81238 0.83670 1.90638 1.20792 1.55804 1.76197 1.21658 0.94613 0.95343 0.90691 0.86978 1.59031 1.12209 1.25032 1.37995 1.21451 0.97670 0.97450 0.95431 1.18817 0.94419 0.93853 0.92551 1.21721 1.32420 0.94151 1.09590 0.92600 1.25855 0.97632 0.95846 1.00047 1.70109 1.45607 1.09606 1.31602 0.85517 0.78365 0.79194 0.78651 1.18804 1.20966 1.20210 0.91365 0.93800 0.84966 0.84223 0.92338 0.83928 0.92006 0.88051 0.87274 0.84212 0.84258 0.94132 0.90814 0.98233 0.97827 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.55 113.37 1.20 2.00 16 2 O -0.36 -9.47 10.56 -50.93 -0.54 -10.01 16 3 C 0.48 13.64 4.59 71.23 0.33 13.97 16 4 O -0.52 -18.02 14.37 29.73 0.43 -17.59 16 5 C 0.11 2.53 3.51 44.08 0.15 2.68 16 6 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 7 C 0.07 1.24 6.24 71.94 0.45 1.69 16 8 O -0.37 -6.50 10.74 -148.98 -1.60 -8.10 16 9 C 0.04 0.68 6.98 72.08 0.50 1.18 16 10 C 0.07 1.28 5.68 86.35 0.49 1.77 16 11 N -0.60 -15.41 3.03 -798.44 -2.42 -17.83 16 12 C 0.49 15.68 6.57 87.66 0.58 16.26 16 13 O -0.56 -21.03 12.20 21.02 0.26 -20.77 16 14 C 0.09 3.09 2.30 44.17 0.10 3.19 16 15 H 0.11 3.44 6.81 -2.39 -0.02 3.43 16 16 N -0.81 -28.52 8.44 -171.82 -1.45 -29.97 16 17 C -0.08 -3.20 4.49 30.60 0.14 -3.06 16 18 C 0.04 2.05 4.86 29.85 0.15 2.20 16 19 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 20 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 23 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 27 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.18 7.94 -2.38 -0.02 1.16 16 32 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 2.28 5.13 -2.39 -0.01 2.27 16 36 H 0.34 12.42 8.58 -89.69 -0.77 11.65 16 37 H 0.34 10.90 9.06 -89.69 -0.81 10.08 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 2.59 6.83 -2.39 -0.02 2.57 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.00 0.19 7.75 -2.39 -0.02 0.17 16 42 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -74.49 343.40 1.24 -73.25 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.53 Total: 27.74 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 4.78 Total: 12.93 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.58 Total: -103.10 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -1.45 Total: -56.47 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.49 1.24 -73.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424183336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.654 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds