Wall clock time and date at job start Tue Mar 31 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.46364 * 120.31427 * 30.22514 * 3 2 1 5 5 C 1.35524 * 118.95179 * 180.02562 * 4 3 2 6 6 C 1.41594 * 119.52895 * 0.02562 * 5 4 3 7 7 N 1.31468 * 119.67973 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99613 * 186.16818 * 7 6 5 9 9 C 1.50697 * 109.46965 * 233.56012 * 8 7 6 10 10 O 1.21285 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00049 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99827 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46900 * 184.78628 * 12 11 9 14 14 C 1.50702 * 115.55526 * 294.31084 * 13 12 11 15 15 H 1.08004 * 119.99360 * 95.34790 * 14 13 12 16 16 C 1.37873 * 120.00272 * 275.08462 * 14 13 12 17 17 N 1.31519 * 119.99704 * 355.46334 * 16 14 13 18 18 Si 1.86802 * 120.00053 * 175.47153 * 16 14 13 19 19 H 1.48494 * 109.46958 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47346 * 119.99524 * 18 16 14 21 21 H 1.48501 * 109.46734 * 239.99431 * 18 16 14 22 22 C 1.53000 * 117.49971 * 79.98462 * 13 12 11 23 23 C 1.53001 * 117.50025 * 148.64480 * 13 12 11 24 24 N 1.37351 * 120.63062 * 0.26933 * 6 5 4 25 25 H 0.97002 * 119.43980 * 179.70391 * 24 6 5 26 26 C 1.35486 * 121.11524 * 359.44276 * 24 6 5 27 27 H 1.07999 * 120.52702 * 0.04367 * 4 3 2 28 28 H 1.07997 * 120.23595 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47284 * 113.55888 * 8 7 6 30 30 H 1.09005 * 109.47354 * 353.55768 * 8 7 6 31 31 H 0.96998 * 120.00546 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47330 * 64.78997 * 12 11 9 33 33 H 1.08996 * 109.47524 * 304.78582 * 12 11 9 34 34 H 0.97002 * 119.99822 * 185.00246 * 17 16 14 35 35 H 1.09003 * 117.50101 * 214.99886 * 22 13 12 36 36 H 1.09005 * 117.49944 * 0.02562 * 22 13 12 37 37 H 1.09002 * 117.49933 * 359.97245 * 23 13 12 38 38 H 1.08996 * 117.50307 * 144.97362 * 23 13 12 39 39 H 1.08000 * 119.80399 * 180.28126 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3073 -1.0908 -0.6361 5 6 4.6622 -1.0626 -0.6194 6 6 5.3301 0.0157 0.0099 7 7 6.6443 0.0463 0.0274 8 6 7.3427 1.0836 0.7906 9 6 8.3204 1.7959 -0.1080 10 8 8.4233 1.4696 -1.2716 11 7 9.0797 2.7963 0.3810 12 6 10.0306 3.4884 -0.4925 13 6 10.8434 4.4899 0.3304 14 6 10.0617 5.6396 0.9120 15 1 9.6917 5.5832 1.9251 16 6 9.8234 6.7654 0.1527 17 7 10.3532 6.8741 -1.0462 18 14 8.7485 8.1364 0.8267 19 1 8.2774 7.7726 2.1871 20 1 9.5351 9.3942 0.8948 21 1 7.5782 8.3322 -0.0662 22 6 12.0140 3.9448 1.1511 23 6 12.2815 4.7661 -0.1126 24 7 4.6180 1.0274 0.6066 25 1 5.0933 1.7556 1.0365 26 6 3.2632 1.0282 0.6002 27 1 2.7815 -1.9056 -1.1114 28 1 5.2284 -1.8569 -1.0828 29 1 7.8799 0.6245 1.6205 30 1 6.6178 1.7994 1.1786 31 1 8.9972 3.0576 1.3115 32 1 9.4865 4.0178 -1.2748 33 1 10.7031 2.7606 -0.9465 34 1 10.2461 7.6954 -1.5511 35 1 12.2186 4.4176 2.1116 36 1 12.2053 2.8727 1.1044 37 1 12.6488 4.2340 -0.9902 38 1 12.6621 5.7793 0.0162 39 1 2.7246 1.8368 1.0719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435955326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:41 Heat of formation + Delta-G solvation = 57.482255 kcal Electronic energy + Delta-G solvation = -22583.775577 eV Core-core repulsion = 19106.375891 eV Total energy + Delta-G solvation = -3477.399686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.53119 -40.43714 -38.47119 -37.71816 -35.79540 -34.92099 -34.26724 -33.95083 -31.58361 -29.11171 -27.72789 -26.64269 -24.98917 -23.39982 -22.90850 -21.37950 -21.10395 -20.94578 -18.57507 -18.31887 -17.78126 -17.57554 -16.87220 -16.70566 -16.29316 -16.22324 -15.69267 -15.47288 -15.16864 -14.87135 -14.60431 -14.43010 -14.19662 -14.10010 -13.83548 -13.49777 -13.30325 -13.21085 -12.91401 -12.85505 -12.44758 -12.30916 -12.02731 -11.64154 -11.40836 -11.16365 -10.93651 -10.79899 -10.45660 -10.42602 -10.03694 -9.82930 -8.37340 -8.08736 -6.23691 0.01084 0.33553 1.42176 1.45733 1.55075 1.58791 1.75339 1.96624 2.01047 2.38489 2.44283 2.82736 3.07921 3.19370 3.39232 3.52820 3.73954 3.97382 4.02339 4.09388 4.25905 4.27669 4.48572 4.55802 4.61159 4.65574 4.74070 4.99653 5.01535 5.04441 5.25990 5.28415 5.35925 5.55456 5.60700 5.64993 5.70936 5.78840 6.01313 6.36858 6.64974 6.77486 6.85707 7.03556 7.43896 7.46872 8.98502 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.003106 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.809383 B = 9011.801421 C =10258.849615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.303 3.697 3 C -0.172 4.172 4 C 0.006 3.994 5 C -0.164 4.164 6 C 0.397 3.603 7 N -0.605 5.605 8 C 0.042 3.958 9 C 0.499 3.501 10 O -0.586 6.586 11 N -0.699 5.699 12 C 0.181 3.819 13 C 0.005 3.995 14 C -0.501 4.501 15 H 0.069 0.931 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.952 3.048 19 H -0.255 1.255 20 H -0.288 1.288 21 H -0.289 1.289 22 C -0.176 4.176 23 C -0.158 4.158 24 N -0.623 5.623 25 H 0.428 0.572 26 C 0.234 3.766 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.412 0.588 32 H 0.023 0.977 33 H 0.031 0.969 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.744 -12.281 8.122 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.010 4.010 3 C -0.185 4.185 4 C -0.019 4.019 5 C -0.186 4.186 6 C 0.131 3.869 7 N -0.332 5.332 8 C -0.092 4.092 9 C 0.285 3.715 10 O -0.466 6.466 11 N -0.350 5.350 12 C 0.056 3.944 13 C 0.004 3.996 14 C -0.539 4.539 15 H 0.087 0.913 16 C -0.179 4.179 17 N -0.548 5.548 18 Si 0.778 3.222 19 H -0.179 1.179 20 H -0.214 1.214 21 H -0.216 1.216 22 C -0.213 4.213 23 C -0.197 4.197 24 N -0.242 5.242 25 H 0.270 0.730 26 C 0.097 3.903 27 H 0.182 0.818 28 H 0.174 0.826 29 H 0.146 0.854 30 H 0.104 0.896 31 H 0.248 0.752 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.508 -12.851 6.809 19.849 hybrid contribution 0.151 2.172 0.572 2.251 sum -13.357 -10.679 7.380 18.626 Atomic orbital electron populations 1.81348 1.13351 1.09537 1.11979 1.25119 0.91771 0.92385 0.91753 1.16149 0.83974 1.01797 1.16566 1.22182 0.92433 0.95379 0.91882 1.20658 0.93884 0.98456 1.05597 1.20529 0.88060 0.88194 0.90093 1.73488 1.04572 1.27910 1.27191 1.21722 0.96567 0.94980 0.95913 1.21303 0.81902 0.79705 0.88545 1.90650 1.69300 1.66517 1.20168 1.45848 1.39721 1.34403 1.15025 1.20507 0.90142 0.91772 0.91935 1.19086 0.87126 0.95105 0.98284 1.20717 1.34135 1.00047 0.99015 0.91298 1.25764 0.96647 1.00695 0.94844 1.70143 1.45351 1.26893 1.12418 0.85598 0.78580 0.79088 0.78903 1.17902 1.21406 1.21556 1.23001 1.05252 0.97917 0.95119 1.22396 1.01746 0.98821 0.96694 1.42989 1.06453 1.24280 1.50437 0.72968 1.22667 0.82552 0.96172 0.88936 0.81774 0.82557 0.85390 0.89595 0.75158 0.95841 0.95023 0.93315 0.89418 0.89532 0.91623 0.91684 0.77231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.07 18.54 19.00 0.35 -9.72 16 2 C 0.30 4.39 15.38 88.33 1.36 5.75 16 3 C -0.17 -1.72 5.88 -20.02 -0.12 -1.83 16 4 C 0.01 0.06 10.05 23.76 0.24 0.30 16 5 C -0.16 -2.47 9.97 22.47 0.22 -2.25 16 6 C 0.40 7.46 7.46 134.51 1.00 8.46 16 7 N -0.60 -15.96 10.03 -348.64 -3.50 -19.45 16 8 C 0.04 0.98 6.81 85.63 0.58 1.57 16 9 C 0.50 17.78 7.90 87.66 0.69 18.47 16 10 O -0.59 -27.13 16.43 -3.05 -0.05 -27.18 16 11 N -0.70 -25.07 5.48 -463.06 -2.54 -27.61 16 12 C 0.18 8.14 5.50 86.38 0.48 8.62 16 13 C 0.00 0.21 1.46 -52.93 -0.08 0.14 16 14 C -0.50 -24.40 8.62 25.60 0.22 -24.18 16 15 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 16 C 0.02 1.07 5.43 84.65 0.46 1.53 16 17 N -0.91 -50.50 12.66 21.45 0.27 -50.23 16 18 Si 0.95 40.22 29.54 68.60 2.03 42.24 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 22 C -0.18 -6.83 9.96 30.62 0.30 -6.52 16 23 C -0.16 -7.20 9.15 30.62 0.28 -6.92 16 24 N -0.62 -6.96 5.21 -190.94 -0.99 -7.95 16 25 H 0.43 3.64 6.08 -92.71 -0.56 3.08 16 26 C 0.23 1.54 10.94 84.03 0.92 2.46 16 27 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.09 1.36 5.34 -2.38 -0.01 1.35 16 31 H 0.41 12.49 8.35 -92.71 -0.77 11.71 16 32 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.21 -0.27 8.06 -2.91 -0.02 -0.29 16 Total: -1.00 -76.07 350.74 1.91 -74.16 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -0.23 Total: 20.16 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.57 Total: 5.59 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -6.41 Total: -114.97 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -76.07 1.91 -74.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.645 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds