Wall clock time and date at job start Tue Mar 31 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34641 * 117.00473 * 2 1 4 4 O 1.21516 * 119.99216 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00490 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00043 * 0.02562 * 5 3 2 7 7 C 1.46499 * 120.00144 * 179.97438 * 5 3 2 8 8 C 1.52995 * 109.47345 * 270.00357 * 7 5 3 9 9 C 1.53002 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.50691 * 109.47382 * 179.97438 * 9 8 7 11 11 O 1.21278 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.47575 * 134.49576 * 180.02562 * 12 10 9 14 14 C 1.53952 * 86.11883 * 155.35932 * 13 12 10 15 15 O 1.42896 * 113.73968 * 269.15538 * 14 13 12 16 16 C 1.50696 * 113.74096 * 137.94737 * 14 13 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47581 * 134.48697 * 359.97438 * 12 10 9 25 25 H 1.09003 * 109.46860 * 59.99987 * 1 2 3 26 26 H 1.08996 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47068 * 299.99819 * 1 2 3 28 28 H 1.08997 * 109.47201 * 270.00105 * 6 5 3 29 29 H 1.09000 * 109.46892 * 29.99617 * 6 5 3 30 30 H 1.09000 * 109.47132 * 149.99527 * 6 5 3 31 31 H 1.09006 * 109.46791 * 150.00004 * 7 5 3 32 32 H 1.09001 * 109.46969 * 30.00604 * 7 5 3 33 33 H 1.08998 * 109.47228 * 59.99907 * 8 7 5 34 34 H 1.09001 * 109.47289 * 300.00051 * 8 7 5 35 35 H 1.09006 * 109.46821 * 59.99672 * 9 8 7 36 36 H 1.09001 * 109.47010 * 300.00228 * 9 8 7 37 37 H 1.08992 * 113.77450 * 41.05752 * 13 12 10 38 38 H 1.09008 * 113.87093 * 269.66964 * 13 12 10 39 39 H 0.96697 * 113.99744 * 178.07719 * 15 14 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.76822 * 90.34347 * 24 12 10 42 42 H 1.08998 * 113.77440 * 318.94601 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2071 0.0415 0.0005 7 6 4.0743 2.5754 0.0000 8 6 4.3064 3.0290 -1.4427 9 6 5.0005 4.3925 -1.4432 10 6 5.2296 4.8390 -2.8641 11 8 4.8726 4.1361 -3.7857 12 7 5.8305 6.0199 -3.1110 13 6 6.2051 6.7539 -4.3352 14 6 6.1322 8.0251 -3.4698 15 8 4.8454 8.6463 -3.4673 16 6 7.2541 8.9982 -3.7255 17 1 8.0104 8.7692 -4.4615 18 6 7.3143 10.1816 -3.0203 19 7 8.2930 11.0312 -3.2438 20 14 6.0056 10.5781 -1.7477 21 1 4.8890 11.3104 -2.3974 22 1 5.4922 9.3165 -1.1560 23 1 6.5953 11.4225 -0.6779 24 6 6.3773 7.0988 -2.2653 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.4046 -0.2635 1.0282 29 1 3.6587 -0.7478 -0.5137 30 1 5.1516 0.2216 -0.5130 31 1 5.0321 2.4954 0.5143 32 1 3.4461 3.3035 0.5132 33 1 3.3487 3.1090 -1.9569 34 1 4.9346 2.3009 -1.9559 35 1 5.9582 4.3129 -0.9288 36 1 4.3719 5.1204 -0.9302 37 1 5.4501 6.7131 -5.1203 38 1 7.2077 6.5257 -4.6970 39 1 4.7874 9.4285 -2.9017 40 1 8.3351 11.8638 -2.7480 41 1 7.4308 6.9709 -2.0167 42 1 5.7598 7.3331 -1.3982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492293520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:16 Heat of formation + Delta-G solvation = -138.950074 kcal Electronic energy + Delta-G solvation = -24535.259958 eV Core-core repulsion = 20709.740656 eV Total energy + Delta-G solvation = -3825.519302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63596 -41.36165 -39.45688 -38.20892 -36.87599 -36.24252 -34.54106 -34.33877 -30.94981 -29.13924 -28.56017 -27.49637 -27.05157 -26.34749 -23.47398 -21.82678 -21.44551 -20.11616 -19.34350 -19.13395 -18.34170 -18.15044 -17.93724 -17.61558 -16.97996 -16.75379 -15.80110 -15.71825 -15.54839 -15.31273 -15.07815 -14.93549 -14.59933 -14.30967 -14.03119 -13.90961 -13.80485 -13.37992 -13.17081 -12.97175 -12.91754 -12.82353 -12.73515 -12.59308 -12.41901 -11.93218 -11.84566 -11.74070 -11.70835 -11.42530 -11.10057 -10.84468 -10.46156 -9.87950 -9.64537 -8.41702 -6.54010 1.12819 1.26864 1.29122 1.42054 1.63170 1.64443 1.91023 2.18785 2.77925 2.94914 3.22150 3.52746 3.86068 3.91225 3.95210 4.22909 4.31147 4.32598 4.32942 4.34978 4.41113 4.46374 4.54342 4.62214 4.66048 4.67967 4.72261 4.74725 4.87907 4.93747 4.94712 5.01277 5.18305 5.24836 5.30699 5.42753 6.04712 6.18844 6.53563 6.66838 6.81302 7.11616 7.14114 7.15229 8.73663 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.027135 B = 0.002824 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.639851 B = 9910.895315 C =10204.840467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.636 3.364 4 O -0.609 6.609 5 N -0.596 5.596 6 C 0.078 3.922 7 C 0.133 3.867 8 C -0.109 4.109 9 C -0.122 4.122 10 C 0.522 3.478 11 O -0.599 6.599 12 N -0.637 5.637 13 C 0.120 3.880 14 C 0.181 3.819 15 O -0.563 6.563 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.027 3.973 19 N -0.924 5.924 20 Si 0.919 3.081 21 H -0.262 1.262 22 H -0.225 1.225 23 H -0.281 1.281 24 C 0.080 3.920 25 H 0.053 0.947 26 H 0.139 0.861 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.355 0.645 40 H 0.273 0.727 41 H 0.110 0.890 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 -20.836 13.261 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.390 3.610 4 O -0.501 6.501 5 N -0.336 5.336 6 C -0.063 4.063 7 C 0.012 3.988 8 C -0.148 4.148 9 C -0.161 4.161 10 C 0.314 3.686 11 O -0.481 6.481 12 N -0.370 5.370 13 C -0.002 4.002 14 C 0.140 3.860 15 O -0.375 6.375 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.174 4.174 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.188 1.188 22 H -0.149 1.149 23 H -0.207 1.207 24 C -0.043 4.043 25 H 0.072 0.928 26 H 0.156 0.844 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.208 0.792 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.530 -21.460 12.483 26.251 hybrid contribution -0.369 1.324 0.157 1.384 sum -8.898 -20.136 12.640 25.385 Atomic orbital electron populations 1.23477 0.73088 1.05618 1.02310 1.86237 1.25532 1.29971 1.86712 1.18460 0.84085 0.82173 0.76236 1.90985 1.65347 1.36290 1.57489 1.46849 1.01740 1.09923 1.75061 1.22037 0.96302 0.84376 1.03634 1.21633 0.99012 0.82293 0.95837 1.21585 1.00008 0.95664 0.97575 1.21528 1.04812 0.98315 0.91492 1.21136 0.76253 0.78223 0.92977 1.90633 1.54227 1.54616 1.48643 1.50145 1.57383 1.18383 1.11112 1.23247 1.00304 0.86997 0.89670 1.20649 0.81275 0.90387 0.93684 1.86484 1.34186 1.45603 1.71218 1.21340 1.09598 1.03553 1.23569 0.92606 1.25837 0.97600 0.95435 0.98532 1.69999 1.33211 1.10557 1.42378 0.86337 0.79266 0.80598 0.79459 1.18846 1.14903 1.20729 1.24442 1.00207 0.83069 0.96571 0.92793 0.84352 0.91996 0.90406 0.90564 0.88878 0.85384 0.90299 0.94588 0.90991 0.85165 0.87775 0.91890 0.87999 0.79168 0.91719 0.87160 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 10.56 113.37 1.20 1.91 16 2 O -0.37 -7.53 9.39 -55.50 -0.52 -8.05 16 3 C 0.64 15.97 8.40 129.79 1.09 17.06 16 4 O -0.61 -19.81 15.71 19.79 0.31 -19.50 16 5 N -0.60 -11.47 2.87 -977.26 -2.81 -14.27 16 6 C 0.08 0.88 10.44 127.77 1.33 2.21 16 7 C 0.13 2.36 5.41 86.38 0.47 2.82 16 8 C -0.11 -2.60 4.83 30.59 0.15 -2.45 16 9 C -0.12 -2.93 5.45 29.85 0.16 -2.76 16 10 C 0.52 18.77 8.06 87.65 0.71 19.48 16 11 O -0.60 -26.14 16.71 -3.02 -0.05 -26.19 16 12 N -0.64 -23.90 3.61 -840.32 -3.03 -26.93 16 13 C 0.12 5.00 8.23 86.48 0.71 5.71 16 14 C 0.18 7.95 1.06 -10.89 -0.01 7.94 16 15 O -0.56 -25.63 13.32 -148.98 -1.98 -27.61 16 16 C -0.54 -27.91 9.20 25.60 0.24 -27.68 16 17 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 18 C 0.03 1.40 5.47 84.66 0.46 1.86 16 19 N -0.92 -52.06 13.96 21.45 0.30 -51.76 16 20 Si 0.92 37.17 24.34 68.60 1.67 38.84 16 21 H -0.26 -10.42 7.06 99.48 0.70 -9.72 16 22 H -0.23 -7.90 5.28 99.48 0.53 -7.37 16 23 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.08 2.83 7.20 86.47 0.62 3.45 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.89 7.38 -2.39 -0.02 0.87 16 30 H 0.09 0.76 8.07 -2.39 -0.02 0.74 16 31 H 0.13 1.24 8.07 -2.38 -0.02 1.22 16 32 H 0.08 1.60 7.42 -2.39 -0.02 1.59 16 33 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 34 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.10 3.98 8.09 -2.38 -0.02 3.96 16 39 H 0.36 15.01 3.31 -74.06 -0.24 14.77 16 40 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.11 3.62 8.09 -2.39 -0.02 3.60 16 42 H 0.09 2.86 6.98 -2.39 -0.02 2.85 16 Total: -1.00 -75.58 350.62 1.60 -73.97 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.59 Total: 31.95 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 7.13 Total: 29.56 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -5.54 Total: -92.96 kcal Atomic # 8 Polarization: -79.11 SS G_CDS: -2.24 Total: -81.36 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 1.67 Total: 38.84 kcal Total: -75.58 1.60 -73.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492293520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.977 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds