Wall clock time and date at job start Tue Mar 31 2020 03:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38399 * 120.39345 * 2 1 4 4 C 1.39930 * 118.35257 * 180.02562 * 3 2 1 5 5 C 1.43199 * 120.47258 * 179.97438 * 4 3 2 6 6 N 4.80161 * 136.42783 * 359.97438 * 2 1 3 7 7 C 1.39902 * 119.06324 * 0.02562 * 4 3 2 8 8 N 1.31335 * 120.69806 * 359.73873 * 7 4 3 9 9 C 1.32787 * 121.80250 * 0.53144 * 8 7 4 10 10 C 1.48216 * 119.55959 * 179.75067 * 9 8 7 11 11 O 1.21507 * 120.00043 * 104.04865 * 10 9 8 12 12 N 1.34779 * 119.99545 * 284.03747 * 10 9 8 13 13 C 1.46959 * 120.59762 * 4.89096 * 12 10 9 14 14 C 1.53375 * 108.63524 * 235.20030 * 13 12 10 15 15 N 1.46961 * 108.63074 * 310.57453 * 14 13 12 16 16 C 1.36939 * 120.59117 * 235.19842 * 15 14 13 17 17 H 1.08004 * 119.99647 * 148.14373 * 16 15 14 18 18 C 1.38809 * 120.00191 * 327.87324 * 16 15 14 19 19 N 1.31622 * 120.00002 * 350.02883 * 18 16 15 20 20 Si 1.86804 * 120.00209 * 170.02807 * 18 16 15 21 21 H 1.48502 * 109.46915 * 59.99852 * 20 18 16 22 22 H 1.48499 * 109.47122 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47128 * 300.00112 * 20 18 16 24 24 C 1.46966 * 118.81573 * 55.48013 * 15 14 13 25 25 C 1.46970 * 120.59086 * 184.85953 * 12 10 9 26 26 H 1.09000 * 109.46760 * 274.67493 * 1 2 3 27 27 H 1.09000 * 109.47108 * 34.67797 * 1 2 3 28 28 H 1.09005 * 109.46630 * 154.67462 * 1 2 3 29 29 H 1.08000 * 120.82382 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.65123 * 180.02562 * 7 4 3 31 31 H 1.08996 * 109.61287 * 115.45352 * 13 12 10 32 32 H 1.09003 * 109.60800 * 354.94311 * 13 12 10 33 33 H 1.08995 * 109.60756 * 190.82925 * 14 13 12 34 34 H 1.08995 * 109.60775 * 70.32122 * 14 13 12 35 35 H 0.96995 * 120.00242 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.60613 * 64.26024 * 24 15 14 37 37 H 1.08995 * 109.60938 * 184.77408 * 24 15 14 38 38 H 1.08998 * 109.61280 * 244.54053 * 25 12 10 39 39 H 1.08996 * 109.60689 * 5.06082 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1938 0.0000 4 6 3.6056 1.1440 -0.0006 5 6 4.3753 2.3515 -0.0011 6 7 4.9858 3.3096 -0.0015 7 6 4.2413 -0.1023 -0.0016 8 7 3.5399 -1.2127 0.0030 9 6 2.2121 -1.2017 -0.0016 10 6 1.4702 -2.4848 -0.0016 11 8 0.9414 -2.8809 1.0182 12 7 1.3819 -3.2121 -1.1328 13 6 2.1042 -2.8008 -2.3448 14 6 1.0983 -2.6741 -3.4956 15 7 0.2785 -3.8931 -3.5390 16 6 0.1888 -4.6321 -4.6883 17 1 0.0595 -5.7029 -4.6331 18 6 0.2584 -4.0042 -5.9244 19 7 0.2128 -2.6909 -5.9989 20 14 0.4169 -5.0232 -7.4820 21 1 -0.7555 -5.9265 -7.6039 22 1 0.4720 -4.1210 -8.6602 23 1 1.6607 -5.8321 -7.4199 24 6 -0.4483 -4.3014 -2.3286 25 6 0.5621 -4.4312 -1.1762 26 1 -0.3633 0.0838 1.0243 27 1 -0.3633 0.8451 -0.5847 28 1 -0.3633 -0.9290 -0.4396 29 1 1.6872 2.1404 0.0004 30 1 5.3201 -0.1519 -0.0016 31 1 2.8545 -3.5506 -2.5957 32 1 2.5876 -1.8389 -2.1738 33 1 1.6334 -2.5593 -4.4382 34 1 0.4578 -1.8082 -3.3279 35 1 0.2618 -2.2522 -6.8626 36 1 -1.1964 -3.5486 -2.0798 37 1 -0.9348 -5.2614 -2.5005 38 1 1.2026 -5.2970 -1.3440 39 1 0.0271 -4.5459 -0.2336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556280084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:51 Heat of formation + Delta-G solvation = 45.960175 kcal Electronic energy + Delta-G solvation = -24129.620670 eV Core-core repulsion = 20651.721349 eV Total energy + Delta-G solvation = -3477.899321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10795 -40.46600 -38.47177 -37.75798 -35.63761 -34.90029 -33.75896 -32.94774 -31.85095 -29.13382 -28.39128 -26.74199 -25.24475 -24.41851 -23.93068 -22.50777 -20.69243 -19.62343 -19.25237 -18.26719 -17.93843 -17.51555 -16.71452 -16.14172 -15.82965 -15.61942 -15.41942 -15.18276 -15.01335 -14.97407 -14.63177 -14.51019 -14.41092 -14.09913 -13.88952 -13.72462 -13.61395 -13.31241 -13.09647 -12.94994 -12.66497 -12.49369 -12.25917 -12.00221 -11.94496 -11.69670 -11.35579 -10.92910 -10.69709 -10.56755 -10.09556 -9.90974 -8.58957 -7.85835 -5.39738 -0.77272 0.04190 1.29518 1.47424 1.52194 1.53047 1.59290 1.67405 1.89828 2.52143 2.57067 2.64961 3.02677 3.30819 3.45508 3.60624 3.62768 3.74519 3.86021 4.19185 4.23890 4.29350 4.38086 4.47966 4.56507 4.65457 4.69540 4.72812 4.79761 4.83099 4.97376 5.05701 5.10725 5.23815 5.32575 5.48900 5.62747 5.66349 6.27127 6.30162 6.40943 6.57149 6.92039 7.14758 7.80249 8.34641 9.18528 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.004235 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.913132 B = 6609.875260 C = 7496.296925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.100 4.100 3 C -0.009 4.009 4 C -0.060 4.060 5 C 0.287 3.713 6 N -0.440 5.440 7 C 0.155 3.845 8 N -0.473 5.473 9 C 0.107 3.893 10 C 0.573 3.427 11 O -0.565 6.565 12 N -0.584 5.584 13 C 0.105 3.895 14 C 0.169 3.831 15 N -0.608 5.608 16 C -0.267 4.267 17 H 0.069 0.931 18 C -0.040 4.040 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.277 1.277 24 C 0.133 3.867 25 C 0.103 3.897 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.046 0.954 29 H 0.186 0.814 30 H 0.201 0.799 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.005 0.995 35 H 0.252 0.748 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 6.377 11.199 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.036 4.036 4 C -0.066 4.066 5 C -0.029 4.029 6 N -0.115 5.115 7 C -0.008 4.008 8 N -0.183 5.183 9 C -0.031 4.031 10 C 0.359 3.641 11 O -0.444 6.444 12 N -0.315 5.315 13 C -0.020 4.020 14 C 0.042 3.958 15 N -0.332 5.332 16 C -0.397 4.397 17 H 0.086 0.914 18 C -0.236 4.236 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.203 1.203 24 C 0.007 3.993 25 C -0.020 4.020 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.065 0.935 29 H 0.203 0.797 30 H 0.218 0.782 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.089 6.874 11.565 14.384 hybrid contribution -0.628 -0.095 -1.099 1.269 sum 4.462 6.778 10.466 13.243 Atomic orbital electron populations 1.20861 0.88234 1.03732 1.04319 1.20833 0.98814 0.91612 0.99012 1.21810 0.91438 0.99370 0.91002 1.17037 0.92697 0.88648 1.08188 1.25137 0.92765 0.92141 0.92837 1.81335 1.09331 1.11327 1.09536 1.23404 1.01782 0.84617 0.91029 1.67762 1.06073 1.31961 1.12472 1.21048 0.90826 0.93475 0.97758 1.18212 0.79619 0.83185 0.83061 1.90746 1.49825 1.71149 1.32696 1.48042 1.46831 1.25502 1.11080 1.22384 0.94914 1.00200 0.84465 1.20974 0.91358 0.87442 0.96009 1.44189 1.52424 1.27984 1.08560 1.19468 1.45305 0.90511 0.84396 0.91369 1.25860 1.00538 0.96509 1.00699 1.70069 1.54855 1.08518 1.24303 0.85359 0.78307 0.77785 0.79028 1.20361 1.22127 1.20308 1.21481 0.92462 0.99073 0.86290 1.22273 0.93896 0.85673 1.00172 0.88686 0.87819 0.93516 0.79656 0.78231 0.91380 0.89793 0.90725 0.97661 0.93899 0.96389 0.90518 0.90834 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.70 71.24 0.69 -1.60 16 2 C -0.10 -2.13 5.92 -19.56 -0.12 -2.24 16 3 C -0.01 -0.13 9.59 22.72 0.22 0.09 16 4 C -0.06 -0.94 5.75 -21.22 -0.12 -1.06 16 5 C 0.29 4.95 15.36 88.33 1.36 6.31 16 6 N -0.44 -9.72 18.54 19.00 0.35 -9.37 16 7 C 0.15 2.68 10.92 85.17 0.93 3.61 16 8 N -0.47 -11.76 9.80 -183.87 -1.80 -13.56 16 9 C 0.11 2.92 4.69 41.92 0.20 3.12 16 10 C 0.57 19.16 5.68 86.90 0.49 19.66 16 11 O -0.56 -21.38 16.53 -3.74 -0.06 -21.44 16 12 N -0.58 -20.17 2.95 -820.14 -2.42 -22.59 16 13 C 0.10 3.69 6.51 86.42 0.56 4.25 16 14 C 0.17 7.43 5.45 86.42 0.47 7.90 16 15 N -0.61 -28.41 2.95 -697.36 -2.06 -30.47 16 16 C -0.27 -13.69 9.57 84.03 0.80 -12.88 16 17 H 0.07 3.40 7.85 -2.91 -0.02 3.38 16 18 C -0.04 -2.09 5.06 84.86 0.43 -1.66 16 19 N -0.93 -51.34 11.03 21.65 0.24 -51.11 16 20 Si 0.97 42.33 29.57 68.60 2.03 44.36 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.13 5.19 6.70 86.56 0.58 5.77 16 25 C 0.10 3.52 6.60 86.56 0.57 4.09 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.10 1.54 8.12 -2.39 -0.02 1.52 16 28 H 0.05 1.23 6.90 -2.38 -0.02 1.22 16 29 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.65 5.96 -2.39 -0.01 2.64 16 33 H 0.07 3.72 6.05 -2.39 -0.01 3.71 16 34 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 36 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.09 3.03 7.02 -2.39 -0.02 3.01 16 Total: -1.00 -65.78 335.16 4.43 -61.35 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.08 Total: 7.48 kcal Atomic # 6 Polarization: 28.29 SS G_CDS: 7.07 Total: 35.35 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -5.69 Total: -127.09 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.78 4.43 -61.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556280084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.306 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds