Wall clock time and date at job start Tue Mar 31 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00027 * 2 1 4 4 O 1.20825 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00127 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47301 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47404 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47245 * 180.02562 * 7 6 5 9 9 C 1.34785 * 120.00212 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99543 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99769 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.65218 * 0.02641 * 11 9 8 13 13 C 1.54905 * 104.83258 * 155.83904 * 12 11 9 14 14 C 1.55153 * 101.58432 * 37.00633 * 13 12 11 15 15 O 1.42899 * 110.72123 * 83.04292 * 14 13 12 16 16 C 1.50702 * 110.72079 * 206.13591 * 14 13 12 17 17 H 1.08002 * 120.00299 * 357.56389 * 16 14 13 18 18 C 1.37884 * 119.99942 * 177.27948 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47319 * 125.61066 * 180.16584 * 11 9 8 25 25 H 1.09002 * 109.47160 * 60.00013 * 1 2 3 26 26 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46952 * 300.00109 * 1 2 3 28 28 H 1.09003 * 109.47293 * 59.99922 * 5 3 2 29 29 H 1.09000 * 109.47376 * 299.99991 * 5 3 2 30 30 H 1.09003 * 109.47283 * 59.99600 * 6 5 3 31 31 H 1.09008 * 109.47388 * 300.00368 * 6 5 3 32 32 H 1.08993 * 109.47294 * 60.00148 * 7 6 5 33 33 H 1.09003 * 109.47130 * 299.99773 * 7 6 5 34 34 H 0.97000 * 120.00134 * 359.97438 * 8 7 6 35 35 H 1.08994 * 110.36742 * 36.99340 * 12 11 9 36 36 H 1.09008 * 110.36374 * 274.67201 * 12 11 9 37 37 H 1.09004 * 111.00291 * 278.93328 * 13 12 11 38 38 H 1.09005 * 111.00807 * 155.08431 * 13 12 11 39 39 H 0.96699 * 114.00083 * 182.43988 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.06766 * 61.74679 * 24 11 9 42 42 H 1.08999 * 109.85130 * 300.49036 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5280 2.8222 -0.0011 8 7 5.9433 4.2271 -0.0009 9 6 7.2538 4.5425 -0.0003 10 8 8.0911 3.6609 -0.0004 11 7 7.6358 5.8349 0.0003 12 6 6.7306 6.9985 0.0010 13 6 7.5655 8.1501 0.6144 14 6 8.9731 7.8600 0.0299 15 8 9.0938 8.3980 -1.2885 16 6 10.0483 8.4127 0.9296 17 1 9.7783 8.9617 1.8196 18 6 11.3769 8.2125 0.6196 19 7 11.7057 7.5441 -0.4642 20 14 12.7096 8.8910 1.7389 21 1 12.5649 8.3019 3.0944 22 1 14.0438 8.5430 1.1873 23 1 12.5798 10.3679 1.8246 24 6 9.0275 6.3181 -0.0025 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 3.6107 3.2365 0.8889 31 1 3.6100 3.2361 -0.8911 32 1 5.9178 2.3279 -0.8908 33 1 5.9177 2.3285 0.8892 34 1 5.2753 4.9304 -0.0013 35 1 5.8535 6.7965 0.6158 36 1 6.4319 7.2473 -1.0174 37 1 7.5743 8.0895 1.7027 38 1 7.1966 9.1204 0.2817 39 1 9.9423 8.2116 -1.7132 40 1 12.6404 7.4036 -0.6825 41 1 9.5376 5.9840 -0.9060 42 1 9.5499 5.9470 0.8792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591894842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:14 Heat of formation + Delta-G solvation = -169.698364 kcal Electronic energy + Delta-G solvation = -24280.824594 eV Core-core repulsion = 20453.971946 eV Total energy + Delta-G solvation = -3826.852648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81464 -39.64135 -37.54921 -36.99428 -35.49187 -34.24696 -32.74704 -32.17865 -30.04288 -28.70750 -27.79220 -26.67417 -24.82114 -22.85062 -22.17977 -20.98701 -19.65831 -19.34707 -18.04222 -17.43652 -17.09571 -17.02339 -16.93229 -15.81672 -15.64896 -15.08330 -14.84099 -14.38817 -14.18523 -13.81388 -13.64552 -13.23329 -12.94485 -12.89983 -12.67205 -12.50818 -12.35285 -12.06122 -11.75703 -11.59151 -11.44545 -11.23429 -11.12441 -11.02076 -10.85123 -10.79955 -10.64336 -10.50151 -10.15361 -9.62276 -9.31209 -8.85047 -8.65379 -8.30336 -7.75111 -6.26810 -4.35266 1.84924 2.30094 3.14470 3.24757 3.29634 3.31766 3.74595 4.26905 4.29280 4.41181 4.60537 4.68751 4.71032 4.78987 4.93913 5.01085 5.14727 5.19648 5.23474 5.39601 5.52476 5.71225 5.79507 5.87704 5.92673 6.01398 6.04223 6.13406 6.52496 6.73937 6.74544 6.90186 6.99355 7.27099 7.33825 7.37346 7.64021 7.75267 8.04522 8.53345 8.68052 9.12810 9.32342 9.42140 10.81037 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.038578 B = 0.002410 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.632381 B =11616.971334 C =11904.001164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.507 6.507 5 C -0.110 4.110 6 C -0.122 4.122 7 C 0.141 3.859 8 N -0.753 5.753 9 C 0.715 3.285 10 O -0.598 6.598 11 N -0.631 5.631 12 C 0.103 3.897 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.586 6.586 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.122 3.878 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.384 0.616 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.544 -11.676 0.537 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.394 6.394 5 C -0.148 4.148 6 C -0.160 4.160 7 C 0.017 3.983 8 N -0.411 5.411 9 C 0.417 3.583 10 O -0.477 6.477 11 N -0.368 5.368 12 C -0.020 4.020 13 C -0.154 4.154 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.576 4.576 17 H 0.084 0.916 18 C -0.133 4.133 19 N -0.533 5.533 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.000 4.000 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.590 -11.973 0.553 22.119 hybrid contribution 0.743 0.410 0.435 0.953 sum -17.847 -11.563 0.988 21.289 Atomic orbital electron populations 1.23273 0.76244 1.03730 1.02627 1.86513 1.23556 1.33604 1.84156 1.23849 0.92316 0.81269 0.72160 1.90691 1.67321 1.36330 1.45054 1.21284 0.87226 0.99634 1.06643 1.21623 0.95275 0.94473 1.04599 1.21021 0.92401 0.82423 1.02498 1.45076 1.06077 1.07898 1.82022 1.15500 0.82226 0.82305 0.78256 1.90882 1.51063 1.46725 1.59001 1.48038 1.10077 1.02669 1.75993 1.22237 0.92751 0.86972 1.00071 1.22724 0.96118 0.96749 0.99799 1.19497 0.91120 0.86730 0.81951 1.86086 1.42398 1.80012 1.31003 1.21472 0.90576 1.36069 1.09494 0.91589 1.25080 0.98995 0.93906 0.95336 1.69640 1.18935 1.39879 1.24876 0.86449 0.80257 0.79436 0.80683 1.20036 1.21082 1.20017 1.22934 0.77998 0.97283 1.01752 0.91842 0.88063 0.91855 0.87031 0.87034 0.90249 0.90226 0.91576 0.91584 0.77189 0.92589 0.91990 0.90543 0.90575 0.76497 0.91902 0.91892 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.00 10.57 -39.27 -0.41 -3.41 16 3 C 0.46 4.21 7.96 36.01 0.29 4.50 16 4 O -0.51 -6.11 15.73 -18.75 -0.29 -6.40 16 5 C -0.11 -0.75 5.81 -27.89 -0.16 -0.91 16 6 C -0.12 -1.05 4.62 -26.74 -0.12 -1.17 16 7 C 0.14 1.63 5.67 -4.05 -0.02 1.61 16 8 N -0.75 -11.03 5.52 -65.23 -0.36 -11.39 16 9 C 0.72 14.46 8.49 -86.91 -0.74 13.72 16 10 O -0.60 -14.39 16.67 5.29 0.09 -14.30 16 11 N -0.63 -13.12 3.33 -176.00 -0.59 -13.70 16 12 C 0.10 1.80 6.57 -2.53 -0.02 1.78 16 13 C -0.12 -2.29 6.23 -24.59 -0.15 -2.45 16 14 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 15 O -0.59 -14.76 13.08 -35.23 -0.46 -15.22 16 16 C -0.54 -14.05 8.11 -34.44 -0.28 -14.33 16 17 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 18 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 19 N -0.89 -23.90 10.96 55.43 0.61 -23.29 16 20 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 C 0.12 3.00 5.39 -2.90 -0.02 2.98 16 25 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.08 0.72 8.10 -51.92 -0.42 0.30 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.39 4.88 6.95 -40.82 -0.28 4.60 16 35 H 0.06 0.78 7.30 -51.93 -0.38 0.40 16 36 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 37 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.38 9.95 7.24 45.56 0.33 10.28 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.69 8.00 -51.93 -0.42 1.27 16 42 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -32.78 353.12 -7.21 -39.99 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.76 Total: 12.28 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -0.33 Total: 14.65 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.34 Total: -48.39 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.08 Total: -39.33 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.78 -7.21 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591894842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.710 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds