Wall clock time and date at job start Tue Mar 31 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00027 * 2 1 4 4 O 1.20825 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00127 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47301 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47404 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47245 * 180.02562 * 7 6 5 9 9 C 1.34785 * 120.00212 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99543 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99769 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.65218 * 0.02641 * 11 9 8 13 13 C 1.54905 * 104.83258 * 155.83904 * 12 11 9 14 14 C 1.55153 * 101.58432 * 37.00633 * 13 12 11 15 15 O 1.42899 * 110.72123 * 83.04292 * 14 13 12 16 16 C 1.50702 * 110.72079 * 206.13591 * 14 13 12 17 17 H 1.08002 * 120.00299 * 357.56389 * 16 14 13 18 18 C 1.37884 * 119.99942 * 177.27948 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47319 * 125.61066 * 180.16584 * 11 9 8 25 25 H 1.09002 * 109.47160 * 60.00013 * 1 2 3 26 26 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46952 * 300.00109 * 1 2 3 28 28 H 1.09003 * 109.47293 * 59.99922 * 5 3 2 29 29 H 1.09000 * 109.47376 * 299.99991 * 5 3 2 30 30 H 1.09003 * 109.47283 * 59.99600 * 6 5 3 31 31 H 1.09008 * 109.47388 * 300.00368 * 6 5 3 32 32 H 1.08993 * 109.47294 * 60.00148 * 7 6 5 33 33 H 1.09003 * 109.47130 * 299.99773 * 7 6 5 34 34 H 0.97000 * 120.00134 * 359.97438 * 8 7 6 35 35 H 1.08994 * 110.36742 * 36.99340 * 12 11 9 36 36 H 1.09008 * 110.36374 * 274.67201 * 12 11 9 37 37 H 1.09004 * 111.00291 * 278.93328 * 13 12 11 38 38 H 1.09005 * 111.00807 * 155.08431 * 13 12 11 39 39 H 0.96699 * 114.00083 * 182.43988 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.06766 * 61.74679 * 24 11 9 42 42 H 1.08999 * 109.85130 * 300.49036 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5280 2.8222 -0.0011 8 7 5.9433 4.2271 -0.0009 9 6 7.2538 4.5425 -0.0003 10 8 8.0911 3.6609 -0.0004 11 7 7.6358 5.8349 0.0003 12 6 6.7306 6.9985 0.0010 13 6 7.5655 8.1501 0.6144 14 6 8.9731 7.8600 0.0299 15 8 9.0938 8.3980 -1.2885 16 6 10.0483 8.4127 0.9296 17 1 9.7783 8.9617 1.8196 18 6 11.3769 8.2125 0.6196 19 7 11.7057 7.5441 -0.4642 20 14 12.7096 8.8910 1.7389 21 1 12.5649 8.3019 3.0944 22 1 14.0438 8.5430 1.1873 23 1 12.5798 10.3679 1.8246 24 6 9.0275 6.3181 -0.0025 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 3.6107 3.2365 0.8889 31 1 3.6100 3.2361 -0.8911 32 1 5.9178 2.3279 -0.8908 33 1 5.9177 2.3285 0.8892 34 1 5.2753 4.9304 -0.0013 35 1 5.8535 6.7965 0.6158 36 1 6.4319 7.2473 -1.0174 37 1 7.5743 8.0895 1.7027 38 1 7.1966 9.1204 0.2817 39 1 9.9423 8.2116 -1.7132 40 1 12.6404 7.4036 -0.6825 41 1 9.5376 5.9840 -0.9060 42 1 9.5499 5.9470 0.8792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591894842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:13 Heat of formation + Delta-G solvation = -194.287891 kcal Electronic energy + Delta-G solvation = -24281.890876 eV Core-core repulsion = 20453.971946 eV Total energy + Delta-G solvation = -3827.918930 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51164 -41.20738 -39.19825 -37.74012 -36.60458 -36.06287 -34.19076 -33.80741 -31.65120 -29.73421 -29.24038 -27.67946 -26.50004 -24.28214 -23.20813 -21.73552 -21.43177 -20.81220 -19.25234 -18.89044 -18.52579 -17.75117 -17.71008 -17.29065 -16.90966 -16.71574 -16.24733 -15.97078 -15.45973 -14.96750 -14.75768 -14.67139 -14.36605 -14.33871 -13.90125 -13.51318 -13.43066 -13.29699 -13.18344 -12.88995 -12.81346 -12.56349 -12.44351 -12.31539 -12.30117 -12.07965 -11.95041 -11.76595 -11.57580 -11.31451 -11.16820 -10.63227 -10.29025 -10.21490 -9.38805 -8.25392 -6.41119 1.17813 1.43237 1.44199 1.52109 1.56577 1.89777 2.15245 2.38896 3.01165 3.08603 3.65383 3.81616 3.95267 3.98726 4.08014 4.16972 4.24742 4.33287 4.33333 4.40147 4.53277 4.59895 4.61983 4.72984 4.73425 4.74204 5.05330 5.08794 5.14241 5.15214 5.25501 5.37341 5.40341 5.50474 5.53868 5.76211 6.03699 6.18334 6.65266 6.71788 7.06541 7.29567 7.37386 7.57173 8.80664 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.038578 B = 0.002410 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.632381 B =11616.971334 C =11904.001164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.541 6.541 5 C -0.106 4.106 6 C -0.108 4.108 7 C 0.139 3.861 8 N -0.732 5.732 9 C 0.710 3.290 10 O -0.643 6.643 11 N -0.637 5.637 12 C 0.107 3.893 13 C -0.111 4.111 14 C 0.232 3.768 15 O -0.588 6.588 16 C -0.558 4.558 17 H 0.068 0.932 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.141 3.859 25 H 0.060 0.940 26 H 0.129 0.871 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.409 0.591 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.376 0.624 40 H 0.270 0.730 41 H 0.027 0.973 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 -11.936 1.270 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.431 6.431 5 C -0.144 4.144 6 C -0.146 4.146 7 C 0.015 3.985 8 N -0.389 5.389 9 C 0.411 3.589 10 O -0.526 6.526 11 N -0.374 5.374 12 C -0.014 4.014 13 C -0.149 4.149 14 C 0.192 3.808 15 O -0.396 6.396 16 C -0.596 4.596 17 H 0.086 0.914 18 C -0.177 4.177 19 N -0.556 5.556 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.193 1.193 24 C 0.017 3.983 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.543 -12.235 1.289 23.945 hybrid contribution 1.263 0.423 0.193 1.346 sum -19.280 -11.813 1.482 22.660 Atomic orbital electron populations 1.23519 0.75021 1.05587 1.02420 1.86508 1.24849 1.33117 1.83746 1.24204 0.92998 0.80977 0.71062 1.90679 1.68210 1.37376 1.46881 1.21316 0.85868 0.98626 1.08557 1.21458 0.92642 0.95907 1.04543 1.21213 0.94381 0.80447 1.02414 1.44955 1.04101 1.09803 1.80076 1.15737 0.83585 0.81512 0.78031 1.90845 1.52856 1.47944 1.60955 1.47976 1.09131 1.03974 1.76300 1.22397 0.92995 0.84675 1.01378 1.22721 0.93520 0.98459 1.00152 1.19722 0.93551 0.86208 0.81367 1.86076 1.41848 1.80118 1.31605 1.21822 0.91557 1.36239 1.09971 0.91408 1.25838 1.01072 0.94177 0.96585 1.69752 1.19124 1.40603 1.26076 0.85513 0.77668 0.79006 0.78877 1.19804 1.20992 1.19264 1.22409 0.79855 0.97753 0.98299 0.92091 0.85246 0.92076 0.85132 0.85057 0.90248 0.90374 0.91787 0.91631 0.75477 0.88023 0.91144 0.89818 0.89162 0.77379 0.92033 0.95434 0.95123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.37 -5.37 10.57 -51.45 -0.54 -5.91 16 3 C 0.46 7.60 7.96 71.24 0.57 8.16 16 4 O -0.54 -12.34 15.73 21.97 0.35 -12.00 16 5 C -0.11 -1.18 5.81 29.85 0.17 -1.00 16 6 C -0.11 -1.60 4.62 30.59 0.14 -1.45 16 7 C 0.14 2.95 5.67 86.38 0.49 3.44 16 8 N -0.73 -20.00 5.52 -478.55 -2.64 -22.64 16 9 C 0.71 28.31 8.49 179.05 1.52 29.83 16 10 O -0.64 -31.47 16.67 -3.98 -0.07 -31.54 16 11 N -0.64 -26.20 3.33 -829.01 -2.76 -28.97 16 12 C 0.11 3.48 6.57 86.85 0.57 4.05 16 13 C -0.11 -4.18 6.23 31.98 0.20 -3.98 16 14 C 0.23 11.29 0.85 -10.35 -0.01 11.28 16 15 O -0.59 -29.98 13.08 -148.98 -1.95 -31.93 16 16 C -0.56 -29.36 8.11 25.60 0.21 -29.15 16 17 H 0.07 3.45 7.77 -2.91 -0.02 3.43 16 18 C 0.02 1.27 5.27 84.66 0.45 1.72 16 19 N -0.92 -50.30 10.96 21.45 0.24 -50.07 16 20 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 C 0.14 7.11 5.39 86.67 0.47 7.57 16 25 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 26 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 28 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.08 1.22 8.10 -2.38 -0.02 1.20 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 8.84 6.95 -92.71 -0.64 8.20 16 35 H 0.10 2.39 7.30 -2.39 -0.02 2.38 16 36 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.08 3.02 8.03 -2.38 -0.02 3.00 16 38 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.38 20.15 7.24 -74.06 -0.54 19.61 16 40 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 41 H 0.03 1.55 8.00 -2.39 -0.02 1.53 16 42 H 0.03 1.71 7.81 -2.39 -0.02 1.69 16 Total: -1.00 -73.07 353.12 0.48 -72.59 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.14 Total: 34.22 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 5.97 Total: 31.94 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -5.17 Total: -101.67 kcal Atomic # 8 Polarization: -79.16 SS G_CDS: -2.21 Total: -81.37 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -73.07 0.48 -72.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591894842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.698 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds