Wall clock time and date at job start Tue Mar 31 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 C 1.34771 * 120.00212 * 179.97438 * 6 5 3 8 8 O 1.21287 * 120.00018 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00400 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.47428 * 300.00539 * 9 7 6 11 11 C 1.53000 * 109.46713 * 60.00118 * 9 7 6 12 12 N 1.46896 * 109.47499 * 179.97438 * 9 7 6 13 13 C 1.47448 * 110.99911 * 59.87619 * 12 9 7 14 14 C 1.54322 * 107.23287 * 123.25798 * 13 12 9 15 15 C 1.55144 * 103.01584 * 22.28311 * 14 13 12 16 16 O 1.42901 * 110.98980 * 82.44106 * 15 14 13 17 17 C 1.50703 * 110.98727 * 206.21758 * 15 14 13 18 18 H 1.07998 * 120.00309 * 118.55061 * 17 15 14 19 19 C 1.37882 * 119.99815 * 298.54707 * 17 15 14 20 20 N 1.31508 * 119.99955 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 119.99662 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47389 * 60.00160 * 21 19 17 23 23 H 1.48498 * 109.47139 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47459 * 300.00103 * 21 19 17 25 25 C 1.47843 * 111.00171 * 180.71871 * 12 9 7 26 26 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 28 28 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 29 29 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 30 30 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 31 31 H 0.97005 * 119.99723 * 359.97438 * 6 5 3 32 32 H 1.09001 * 109.47192 * 180.02562 * 11 9 7 33 33 H 1.09003 * 109.47049 * 300.00277 * 11 9 7 34 34 H 1.08998 * 109.47559 * 60.00116 * 11 9 7 35 35 H 1.09002 * 109.88832 * 242.66169 * 13 12 9 36 36 H 1.08998 * 109.88777 * 3.85337 * 13 12 9 37 37 H 1.08996 * 110.70442 * 140.66527 * 14 13 12 38 38 H 1.09001 * 110.70116 * 263.72706 * 14 13 12 39 39 H 0.96701 * 113.99804 * 61.44662 * 16 15 14 40 40 H 0.97008 * 119.99949 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.37324 * 332.46704 * 25 12 9 42 42 H 1.09001 * 110.37100 * 94.80627 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 6 5.2919 2.9952 -0.0172 8 8 6.1273 2.1159 -0.0173 9 6 5.7192 4.4403 -0.0234 10 1 5.3264 4.9316 -0.9135 11 6 5.1765 5.1379 1.2255 12 7 7.1861 4.5173 -0.0281 13 6 7.7464 3.8510 -1.2182 14 6 8.6091 4.8925 -1.9615 15 6 8.9481 5.9219 -0.8513 16 8 10.0574 5.4809 -0.0659 17 6 9.2145 7.2831 -1.4405 18 1 8.5873 8.1202 -1.1716 19 6 10.2592 7.4599 -2.3229 20 7 11.0227 6.4406 -2.6507 21 14 10.5899 9.1473 -3.0526 22 1 10.8759 10.1117 -1.9602 23 1 11.7588 9.0715 -3.9653 24 1 9.3974 9.6002 -3.8130 25 6 7.6430 5.9233 -0.0169 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 3.9595 0.7833 0.8836 30 1 3.9525 0.7785 -0.8964 31 1 3.3135 3.3831 -0.0112 32 1 5.4851 6.1833 1.2209 33 1 4.0880 5.0808 1.2295 34 1 5.5693 4.6467 2.1158 35 1 8.3648 3.0066 -0.9138 36 1 6.9393 3.5081 -1.8656 37 1 9.5173 4.4330 -2.3513 38 1 8.0405 5.3612 -2.7648 39 1 10.8763 5.3714 -0.5684 40 1 11.7574 6.5649 -3.2718 41 1 6.8968 6.5685 -0.4806 42 1 7.8455 6.2484 1.0036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:05 Heat of formation + Delta-G solvation = -155.001167 kcal Electronic energy + Delta-G solvation = -25079.919687 eV Core-core repulsion = 21253.704357 eV Total energy + Delta-G solvation = -3826.215330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04186 -39.92088 -37.99082 -37.02599 -34.90962 -34.60662 -32.10940 -31.94410 -29.50926 -28.21534 -27.80024 -26.97907 -25.05749 -23.18189 -21.53591 -20.66036 -19.97441 -19.38573 -18.02127 -17.62680 -17.12024 -16.92431 -16.38623 -15.78546 -15.48177 -15.02547 -14.85006 -14.38245 -14.18575 -13.84404 -13.77319 -13.47069 -13.03927 -12.68133 -12.51771 -12.49528 -12.21329 -11.99372 -11.68568 -11.53911 -11.29334 -11.19784 -11.07460 -11.04054 -10.96531 -10.67917 -10.42823 -10.23749 -9.80425 -9.55577 -9.30949 -9.15395 -8.56587 -8.02124 -7.56740 -6.17718 -4.26333 1.67629 2.01517 2.72587 3.12248 3.24925 3.30179 3.32707 4.22463 4.30997 4.57333 4.66294 4.73879 4.78943 4.93678 5.08132 5.08949 5.10136 5.22598 5.36453 5.66897 5.81318 5.82655 5.86565 6.05459 6.12767 6.16231 6.20289 6.32123 6.58207 6.73201 6.96482 7.14884 7.18427 7.32731 7.45877 7.54377 7.68024 7.74478 7.85893 8.18911 8.27305 8.75502 9.42226 9.57402 10.89089 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.002880 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.626945 B = 9718.539855 C = 9842.904755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.504 6.504 5 C 0.129 3.871 6 N -0.733 5.733 7 C 0.525 3.475 8 O -0.511 6.511 9 C 0.062 3.938 10 H 0.064 0.936 11 C -0.141 4.141 12 N -0.507 5.507 13 C 0.058 3.942 14 C -0.148 4.148 15 C 0.252 3.748 16 O -0.578 6.578 17 C -0.537 4.537 18 H 0.060 0.940 19 C 0.072 3.928 20 N -0.893 5.893 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.061 3.939 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.410 0.590 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.377 0.623 40 H 0.267 0.733 41 H 0.048 0.952 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.613 -10.108 3.797 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.303 3.697 4 O -0.391 6.391 5 C 0.004 3.996 6 N -0.392 5.392 7 C 0.311 3.689 8 O -0.383 6.383 9 C -0.051 4.051 10 H 0.082 0.918 11 C -0.199 4.199 12 N -0.232 5.232 13 C -0.069 4.069 14 C -0.187 4.187 15 C 0.212 3.788 16 O -0.385 6.385 17 C -0.575 4.575 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.066 4.066 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.226 0.774 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.356 -10.770 4.614 21.777 hybrid contribution -0.364 1.588 -1.776 2.410 sum -18.721 -9.182 2.838 21.043 Atomic orbital electron populations 1.23337 0.75576 1.04048 1.02818 1.86492 1.23962 1.32649 1.83882 1.23670 0.92024 0.81747 0.72273 1.90682 1.66864 1.36287 1.45312 1.20574 0.86383 0.86176 1.06449 1.45851 1.08545 1.06618 1.78218 1.20754 0.80875 0.92051 0.75179 1.90729 1.50932 1.49782 1.46898 1.21734 0.92658 0.91054 0.99627 0.91822 1.21812 0.99608 1.01568 0.96904 1.63539 1.03028 1.15515 1.41102 1.22743 0.97125 0.97813 0.89215 1.23324 0.99462 0.96960 0.98964 1.19513 0.82988 0.90955 0.85353 1.86148 1.21808 1.90117 1.40473 1.21494 1.14815 0.95079 1.26129 0.92181 1.25001 0.95475 0.97125 0.95503 1.69737 1.18534 1.30173 1.34794 0.86542 0.77722 0.84091 0.78947 1.20052 1.21181 1.20252 1.23037 0.96602 0.86189 1.00735 0.87739 0.91633 0.91630 0.86946 0.87017 0.75274 0.90858 0.92323 0.91239 0.90951 0.95184 0.90387 0.92830 0.77421 0.92333 0.93410 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.92 10.57 -39.26 -0.41 -3.33 16 3 C 0.46 4.36 8.03 36.00 0.29 4.65 16 4 O -0.50 -5.83 15.42 -18.76 -0.29 -6.12 16 5 C 0.13 1.23 6.27 -5.20 -0.03 1.20 16 6 N -0.73 -8.46 5.42 -61.47 -0.33 -8.79 16 7 C 0.53 8.03 6.54 -10.99 -0.07 7.95 16 8 O -0.51 -9.56 14.79 5.55 0.08 -9.48 16 9 C 0.06 0.98 2.08 -68.87 -0.14 0.83 16 10 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 11 C -0.14 -1.84 8.97 37.16 0.33 -1.50 16 12 N -0.51 -10.21 4.83 -224.68 -1.08 -11.30 16 13 C 0.06 1.25 5.23 -2.83 -0.01 1.23 16 14 C -0.15 -3.52 5.37 -24.90 -0.13 -3.65 16 15 C 0.25 6.35 0.87 -89.63 -0.08 6.27 16 16 O -0.58 -15.47 13.16 -35.23 -0.46 -15.93 16 17 C -0.54 -14.37 8.27 -34.44 -0.28 -14.66 16 18 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 19 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 20 N -0.89 -24.07 10.74 55.43 0.60 -23.47 16 21 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.06 1.32 4.57 -2.30 -0.01 1.31 16 26 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 28 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.41 4.28 6.86 -40.82 -0.28 4.00 16 32 H 0.07 0.96 7.04 -51.93 -0.37 0.60 16 33 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.65 8.05 -51.93 -0.42 1.23 16 36 H 0.03 0.60 6.91 -51.93 -0.36 0.24 16 37 H 0.08 1.98 7.53 -51.93 -0.39 1.59 16 38 H 0.05 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.38 10.13 7.56 45.56 0.34 10.47 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.05 0.97 7.47 -51.93 -0.39 0.58 16 42 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -31.66 346.03 -6.48 -38.14 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.59 Total: 12.72 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 0.83 Total: 6.70 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.82 Total: -43.56 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.09 Total: -34.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.66 -6.48 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.864 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds