Wall clock time and date at job start Tue Mar 31 2020 04:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48505 * 109.46661 * 269.99488 * 3 2 1 5 5 H 1.48493 * 109.47359 * 29.99247 * 3 2 1 6 6 H 1.48502 * 109.47033 * 149.99744 * 3 2 1 7 7 C 1.37876 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00519 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47427 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47358 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00160 * 179.97438 * 11 10 9 13 13 O 1.21578 * 119.99880 * 4.99442 * 12 11 10 14 14 N 1.34773 * 119.99627 * 184.99194 * 12 11 10 15 15 C 1.46495 * 120.00499 * 5.09348 * 14 12 11 16 16 C 1.53008 * 109.47041 * 269.99834 * 15 14 12 17 17 O 1.42897 * 109.47058 * 64.99645 * 16 15 14 18 18 C 1.42897 * 114.00198 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47601 * 180.02562 * 18 17 16 20 20 O 1.42902 * 109.46986 * 64.99862 * 19 18 17 21 21 C 1.46506 * 119.99636 * 185.08806 * 14 12 11 22 22 C 1.53781 * 113.61198 * 43.66788 * 21 14 12 23 23 C 1.53957 * 87.01642 * 220.04278 * 22 21 14 24 24 C 1.53776 * 113.61766 * 306.05551 * 21 14 12 25 25 H 0.97002 * 120.00088 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46559 * 59.99512 * 9 7 2 27 27 H 1.09002 * 109.46525 * 299.99924 * 9 7 2 28 28 H 1.09002 * 109.47376 * 59.99867 * 10 9 7 29 29 H 1.08999 * 109.47124 * 300.00554 * 10 9 7 30 30 H 0.96998 * 119.99873 * 0.02562 * 11 10 9 31 31 H 1.08994 * 109.47407 * 29.99590 * 15 14 12 32 32 H 1.08998 * 109.47865 * 150.00282 * 15 14 12 33 33 H 1.09004 * 109.46941 * 184.99939 * 16 15 14 34 34 H 1.08999 * 109.47257 * 304.99906 * 16 15 14 35 35 H 1.09002 * 109.47311 * 300.00489 * 18 17 16 36 36 H 1.09002 * 109.47217 * 60.00041 * 18 17 16 37 37 H 1.08998 * 109.47224 * 184.99927 * 19 18 17 38 38 H 1.09004 * 109.46890 * 305.00030 * 19 18 17 39 39 H 0.96697 * 113.99942 * 180.02562 * 20 19 18 40 40 H 1.09001 * 112.84936 * 174.85846 * 21 14 12 41 41 H 1.09000 * 113.61395 * 334.55934 * 22 21 14 42 42 H 1.08998 * 113.61694 * 105.47045 * 22 21 14 43 43 H 1.08998 * 113.54223 * 270.81133 * 23 22 21 44 44 H 1.09006 * 113.66538 * 139.92818 * 23 22 21 45 45 H 1.08994 * 113.61706 * 254.53038 * 24 21 14 46 46 H 1.09008 * 113.61053 * 25.35065 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0981 0.0007 13 8 3.3990 -6.1000 0.0915 14 7 1.5165 -7.2630 -0.1003 15 6 0.0684 -7.2582 -0.3216 16 6 -0.6537 -7.2549 1.0274 17 8 -0.3723 -6.0344 1.7152 18 6 -1.0017 -5.9293 2.9938 19 6 -0.6331 -4.5901 3.6353 20 8 -1.1783 -3.5230 2.8568 21 6 2.2363 -8.5341 0.0112 22 6 3.2663 -8.5607 1.1528 23 6 4.1931 -9.3263 0.1908 24 6 3.4223 -8.6577 -0.9598 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.5428 -4.9309 0.0011 31 1 -0.2102 -6.3677 -0.8850 32 1 -0.2163 -8.1476 -0.8837 33 1 -1.7281 -7.3409 0.8646 34 1 -0.3084 -8.0975 1.6265 35 1 -2.0834 -5.9881 2.8723 36 1 -0.6632 -6.7444 3.6335 37 1 -1.0396 -4.5472 4.6458 38 1 0.4518 -4.4930 3.6757 39 1 -0.9831 -2.6423 3.2053 40 1 1.5725 -9.3987 0.0019 41 1 3.6402 -7.5741 1.4265 42 1 2.9485 -9.1481 2.0142 43 1 4.0651 -10.4079 0.2316 44 1 5.2374 -9.0199 0.2528 45 1 3.2302 -9.3232 -1.8013 46 1 3.8380 -7.6975 -1.2657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596552973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:08 Heat of formation + Delta-G solvation = -101.596621 kcal Electronic energy + Delta-G solvation = -26294.832538 eV Core-core repulsion = 22606.766097 eV Total energy + Delta-G solvation = -3688.066440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38707 -38.15269 -37.49517 -36.16654 -34.61558 -34.37932 -32.52437 -30.18105 -29.26358 -28.25906 -25.44002 -25.34687 -23.96387 -22.88339 -22.34566 -20.91723 -19.97549 -19.13894 -17.48367 -17.10706 -16.96435 -16.16666 -16.13275 -15.64239 -15.13407 -14.98167 -14.42967 -14.39322 -14.16204 -13.99792 -13.42013 -13.18489 -12.87896 -12.83217 -12.57032 -12.29904 -12.16733 -11.99783 -11.72547 -11.52788 -11.05003 -10.97639 -10.93983 -10.83719 -10.54138 -10.38468 -10.30752 -10.09274 -9.73714 -9.57705 -9.51152 -9.24458 -9.01366 -8.44857 -8.32480 -7.90009 -5.96803 -3.98807 3.06787 3.34958 3.41077 3.45675 3.62813 3.80609 4.43523 4.48051 4.58117 4.76246 4.85475 4.93529 4.97475 5.02368 5.10495 5.22502 5.24593 5.30409 5.33645 5.39115 5.46710 5.52446 5.69944 5.75137 5.78866 5.89203 5.96986 6.04073 6.28054 6.36075 6.42818 6.58072 6.60091 6.97864 7.00464 7.23394 7.34560 7.43386 7.75441 7.87123 8.00959 8.06352 8.42564 8.68962 9.07112 9.27583 9.64412 11.14092 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.004601 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.664346 B = 6083.959856 C = 7470.681158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.016 3.984 10 C 0.143 3.857 11 N -0.725 5.725 12 C 0.709 3.291 13 O -0.598 6.598 14 N -0.624 5.624 15 C 0.111 3.889 16 C 0.039 3.961 17 O -0.366 6.366 18 C 0.069 3.931 19 C 0.078 3.922 20 O -0.556 6.556 21 C 0.141 3.859 22 C -0.152 4.152 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.259 0.741 26 H 0.017 0.983 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.400 0.600 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.385 0.615 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -19.015 4.416 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.022 4.022 10 C 0.019 3.981 11 N -0.380 5.380 12 C 0.411 3.589 13 O -0.478 6.478 14 N -0.360 5.360 15 C -0.013 4.013 16 C -0.040 4.040 17 O -0.285 6.285 18 C -0.008 4.008 19 C 0.000 4.000 20 O -0.362 6.362 21 C 0.036 3.964 22 C -0.190 4.190 23 C -0.175 4.175 24 C -0.188 4.188 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.237 0.763 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.233 0.767 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.559 -19.191 4.026 19.775 hybrid contribution -0.179 1.075 0.556 1.224 sum -2.738 -18.116 4.582 18.886 Atomic orbital electron populations 1.69986 1.05891 1.26438 1.50693 1.24959 0.94825 0.99041 0.95338 0.86606 0.79879 0.83466 0.78115 1.20710 1.21311 1.19869 1.21089 0.93097 0.90602 1.50797 0.92562 1.19283 0.94130 0.90634 0.98123 1.21482 0.95553 0.81176 0.99861 1.45651 1.10513 1.04766 1.77060 1.15883 0.85106 0.80248 0.77710 1.90775 1.12064 1.86303 1.58698 1.47034 1.06566 1.05017 1.77381 1.21575 0.80913 1.03771 0.95075 1.23068 0.98743 0.87768 0.94412 1.88019 1.72022 1.37347 1.31086 1.22475 0.96983 0.96132 0.85215 1.22066 0.98275 0.87023 0.92649 1.86552 1.78140 1.17198 1.54339 1.22390 0.91655 0.84764 0.97542 1.23510 0.96633 1.02820 0.96077 1.22602 0.99308 0.98297 0.97243 1.23419 0.96767 1.02256 0.96346 0.93105 0.96475 0.95067 0.93326 0.93522 0.76326 0.89655 0.88990 0.92601 0.93319 0.92939 0.92712 0.93041 0.92875 0.76707 0.88127 0.87094 0.92703 0.91036 0.91296 0.92454 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.41 5.09 -27.88 -0.14 0.27 16 10 C 0.14 3.29 5.62 -4.05 -0.02 3.26 16 11 N -0.73 -14.38 4.84 -65.23 -0.32 -14.70 16 12 C 0.71 13.32 7.37 -86.92 -0.64 12.68 16 13 O -0.60 -12.86 12.05 5.30 0.06 -12.79 16 14 N -0.62 -8.92 2.71 -170.87 -0.46 -9.39 16 15 C 0.11 1.25 5.70 -4.04 -0.02 1.23 16 16 C 0.04 0.42 6.28 37.16 0.23 0.65 16 17 O -0.37 -5.31 7.89 -40.08 -0.32 -5.63 16 18 C 0.07 0.85 6.32 37.16 0.23 1.08 16 19 C 0.08 1.05 7.43 37.16 0.28 1.33 16 20 O -0.56 -9.31 13.62 -40.08 -0.55 -9.86 16 21 C 0.14 1.73 4.39 -67.12 -0.29 1.44 16 22 C -0.15 -2.01 7.38 -25.83 -0.19 -2.20 16 23 C -0.14 -1.58 8.09 -25.82 -0.21 -1.79 16 24 C -0.15 -1.92 7.44 -25.92 -0.19 -2.11 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.40 7.63 4.96 -40.82 -0.20 7.43 16 31 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 32 H 0.09 0.73 8.04 -51.93 -0.42 0.32 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.39 5.58 9.12 45.56 0.42 5.99 16 40 H 0.10 0.93 8.04 -51.93 -0.42 0.52 16 41 H 0.11 1.90 5.71 -51.93 -0.30 1.61 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.70 6.22 -51.92 -0.32 1.38 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -33.54 369.72 -8.72 -42.26 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.05 Total: 10.93 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.38 Total: 2.45 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.04 Total: -49.55 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.80 Total: -28.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.54 -8.72 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596552973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.336 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds