Wall clock time and date at job start Tue Mar 31 2020 04:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48505 * 109.46661 * 269.99488 * 3 2 1 5 5 H 1.48493 * 109.47359 * 29.99247 * 3 2 1 6 6 H 1.48502 * 109.47033 * 149.99744 * 3 2 1 7 7 C 1.37876 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00519 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47427 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47358 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00160 * 179.97438 * 11 10 9 13 13 O 1.21578 * 119.99880 * 4.99442 * 12 11 10 14 14 N 1.34773 * 119.99627 * 184.99194 * 12 11 10 15 15 C 1.46495 * 120.00499 * 5.09348 * 14 12 11 16 16 C 1.53008 * 109.47041 * 269.99834 * 15 14 12 17 17 O 1.42897 * 109.47058 * 64.99645 * 16 15 14 18 18 C 1.42897 * 114.00198 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47601 * 180.02562 * 18 17 16 20 20 O 1.42902 * 109.46986 * 64.99862 * 19 18 17 21 21 C 1.46506 * 119.99636 * 185.08806 * 14 12 11 22 22 C 1.53781 * 113.61198 * 43.66788 * 21 14 12 23 23 C 1.53957 * 87.01642 * 220.04278 * 22 21 14 24 24 C 1.53776 * 113.61766 * 306.05551 * 21 14 12 25 25 H 0.97002 * 120.00088 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46559 * 59.99512 * 9 7 2 27 27 H 1.09002 * 109.46525 * 299.99924 * 9 7 2 28 28 H 1.09002 * 109.47376 * 59.99867 * 10 9 7 29 29 H 1.08999 * 109.47124 * 300.00554 * 10 9 7 30 30 H 0.96998 * 119.99873 * 0.02562 * 11 10 9 31 31 H 1.08994 * 109.47407 * 29.99590 * 15 14 12 32 32 H 1.08998 * 109.47865 * 150.00282 * 15 14 12 33 33 H 1.09004 * 109.46941 * 184.99939 * 16 15 14 34 34 H 1.08999 * 109.47257 * 304.99906 * 16 15 14 35 35 H 1.09002 * 109.47311 * 300.00489 * 18 17 16 36 36 H 1.09002 * 109.47217 * 60.00041 * 18 17 16 37 37 H 1.08998 * 109.47224 * 184.99927 * 19 18 17 38 38 H 1.09004 * 109.46890 * 305.00030 * 19 18 17 39 39 H 0.96697 * 113.99942 * 180.02562 * 20 19 18 40 40 H 1.09001 * 112.84936 * 174.85846 * 21 14 12 41 41 H 1.09000 * 113.61395 * 334.55934 * 22 21 14 42 42 H 1.08998 * 113.61694 * 105.47045 * 22 21 14 43 43 H 1.08998 * 113.54223 * 270.81133 * 23 22 21 44 44 H 1.09006 * 113.66538 * 139.92818 * 23 22 21 45 45 H 1.08994 * 113.61706 * 254.53038 * 24 21 14 46 46 H 1.09008 * 113.61053 * 25.35065 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0981 0.0007 13 8 3.3990 -6.1000 0.0915 14 7 1.5165 -7.2630 -0.1003 15 6 0.0684 -7.2582 -0.3216 16 6 -0.6537 -7.2549 1.0274 17 8 -0.3723 -6.0344 1.7152 18 6 -1.0017 -5.9293 2.9938 19 6 -0.6331 -4.5901 3.6353 20 8 -1.1783 -3.5230 2.8568 21 6 2.2363 -8.5341 0.0112 22 6 3.2663 -8.5607 1.1528 23 6 4.1931 -9.3263 0.1908 24 6 3.4223 -8.6577 -0.9598 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.5428 -4.9309 0.0011 31 1 -0.2102 -6.3677 -0.8850 32 1 -0.2163 -8.1476 -0.8837 33 1 -1.7281 -7.3409 0.8646 34 1 -0.3084 -8.0975 1.6265 35 1 -2.0834 -5.9881 2.8723 36 1 -0.6632 -6.7444 3.6335 37 1 -1.0396 -4.5472 4.6458 38 1 0.4518 -4.4930 3.6757 39 1 -0.9831 -2.6423 3.2053 40 1 1.5725 -9.3987 0.0019 41 1 3.6402 -7.5741 1.4265 42 1 2.9485 -9.1481 2.0142 43 1 4.0651 -10.4079 0.2316 44 1 5.2374 -9.0199 0.2528 45 1 3.2302 -9.3232 -1.8013 46 1 3.8380 -7.6975 -1.2657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596552973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:08 Heat of formation + Delta-G solvation = -126.209083 kcal Electronic energy + Delta-G solvation = -26295.899814 eV Core-core repulsion = 22606.766097 eV Total energy + Delta-G solvation = -3689.133717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64550 -39.14560 -38.77700 -37.34836 -36.29757 -35.75384 -34.51890 -31.39348 -31.03005 -29.28764 -27.02067 -26.45951 -25.41008 -23.95478 -23.36547 -22.78873 -21.20303 -20.51999 -18.66124 -18.46144 -18.21711 -17.94911 -17.28097 -16.83456 -16.45588 -16.28932 -16.13583 -15.72496 -15.41737 -15.17671 -14.99157 -14.60460 -14.26612 -14.12927 -13.90250 -13.60254 -13.29904 -13.13018 -13.05057 -12.84390 -12.78220 -12.51755 -12.48346 -12.11385 -12.04683 -11.86526 -11.56323 -11.36445 -11.32933 -11.26498 -10.91197 -10.56891 -10.54069 -10.48993 -9.90062 -9.31230 -8.16820 -6.27787 1.42510 1.43351 1.54669 1.82858 2.29766 2.43834 2.80194 3.16006 3.18919 3.43926 3.79497 3.84219 4.01472 4.04542 4.13436 4.15726 4.27775 4.31654 4.42901 4.50911 4.56955 4.58351 4.59662 4.65029 4.72978 4.85022 4.85610 4.89829 4.93080 5.00138 5.08897 5.22990 5.27564 5.43050 5.47739 5.66450 5.69234 5.89720 5.96883 6.11183 6.24522 6.36462 6.84373 6.86329 7.20678 7.40517 7.78347 8.94335 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.004601 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.664346 B = 6083.959856 C = 7470.681158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.034 3.966 10 C 0.164 3.836 11 N -0.725 5.725 12 C 0.704 3.296 13 O -0.631 6.631 14 N -0.615 5.615 15 C 0.105 3.895 16 C 0.037 3.963 17 O -0.404 6.404 18 C 0.067 3.933 19 C 0.072 3.928 20 O -0.585 6.585 21 C 0.142 3.858 22 C -0.159 4.159 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.264 0.736 26 H -0.004 1.004 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.404 0.596 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.030 0.970 39 H 0.388 0.612 40 H 0.150 0.850 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -21.195 4.583 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.003 4.003 10 C 0.040 3.960 11 N -0.381 5.381 12 C 0.406 3.594 13 O -0.513 6.513 14 N -0.350 5.350 15 C -0.018 4.018 16 C -0.041 4.041 17 O -0.324 6.324 18 C -0.009 4.009 19 C -0.006 4.006 20 O -0.392 6.392 21 C 0.039 3.961 22 C -0.197 4.197 23 C -0.163 4.163 24 C -0.193 4.193 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.049 0.951 39 H 0.237 0.763 40 H 0.167 0.833 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.465 -21.425 4.194 22.105 hybrid contribution 0.076 1.685 0.515 1.764 sum -3.389 -19.740 4.709 20.575 Atomic orbital electron populations 1.70096 1.07353 1.27694 1.50760 1.25799 0.95740 1.02664 0.94452 0.85503 0.78640 0.78770 0.78432 1.19956 1.20269 1.19302 1.21416 0.93252 0.91979 1.51737 0.92832 1.19007 0.93861 0.91402 0.96064 1.20948 0.94529 0.82099 0.98456 1.45397 1.10484 1.04268 1.77918 1.16058 0.84777 0.81101 0.77493 1.90768 1.13687 1.86965 1.59907 1.47076 1.07991 1.04071 1.75824 1.21916 0.78774 1.05142 0.95998 1.23224 1.00091 0.86972 0.93801 1.87981 1.72817 1.39443 1.32190 1.22598 0.97462 0.95899 0.84978 1.22324 0.97032 0.86959 0.94271 1.86516 1.78555 1.18197 1.55895 1.22773 0.92053 0.84903 0.96377 1.23388 0.97800 1.00967 0.97573 1.22622 0.98006 1.00036 0.95623 1.23315 0.97441 1.00747 0.97791 0.92679 0.98577 0.96833 0.94898 0.94667 0.75790 0.91437 0.84459 0.90270 0.91582 0.91992 0.90156 0.89768 0.95145 0.76347 0.83265 0.91804 0.90563 0.87386 0.92866 0.89915 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.29 21.45 0.28 -54.66 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.87 5.09 29.85 0.15 2.02 16 10 C 0.16 8.03 5.62 86.38 0.49 8.51 16 11 N -0.72 -30.04 4.84 -478.56 -2.31 -32.36 16 12 C 0.70 27.20 7.37 179.06 1.32 28.52 16 13 O -0.63 -28.52 12.05 -3.96 -0.05 -28.57 16 14 N -0.61 -16.78 2.71 -812.79 -2.20 -18.98 16 15 C 0.10 2.09 5.70 86.38 0.49 2.58 16 16 C 0.04 0.69 6.28 71.98 0.45 1.14 16 17 O -0.40 -11.43 7.89 -144.35 -1.14 -12.57 16 18 C 0.07 1.56 6.32 71.98 0.45 2.02 16 19 C 0.07 1.94 7.43 71.98 0.53 2.47 16 20 O -0.58 -20.32 13.62 -144.35 -1.97 -22.29 16 21 C 0.14 3.09 4.39 45.51 0.20 3.29 16 22 C -0.16 -3.98 7.38 31.18 0.23 -3.75 16 23 C -0.13 -2.66 8.09 31.18 0.25 -2.41 16 24 C -0.15 -3.73 7.44 31.12 0.23 -3.50 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.40 16.03 4.96 -92.71 -0.46 15.57 16 31 H 0.07 1.62 6.67 -2.39 -0.02 1.61 16 32 H 0.14 1.53 8.04 -2.39 -0.02 1.51 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.39 12.03 9.12 -74.06 -0.68 11.35 16 40 H 0.15 1.89 8.04 -2.39 -0.02 1.87 16 41 H 0.06 2.26 5.71 -2.39 -0.01 2.25 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 1.98 6.22 -2.38 -0.01 1.96 16 Total: -1.00 -76.72 369.72 -0.02 -76.74 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.16 Total: 35.57 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.50 Total: 10.41 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.23 Total: -106.00 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -3.15 Total: -63.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.72 -0.02 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596552973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.466 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds