Wall clock time and date at job start Tue Mar 31 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00217 * 2 1 4 4 O 1.20833 * 119.99992 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00257 * 180.02562 * 3 2 1 6 6 O 1.42893 * 109.47225 * 179.97438 * 5 3 2 7 7 C 1.42903 * 114.00159 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.47401 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46570 * 65.00161 * 8 7 6 10 10 C 1.34776 * 119.99287 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00583 * 5.05598 * 10 9 8 12 12 N 1.34779 * 119.99490 * 185.04752 * 10 9 8 13 13 C 1.46506 * 119.99939 * 175.18512 * 12 10 9 14 14 C 1.53000 * 109.47160 * 185.07825 * 13 12 10 15 15 C 1.50699 * 115.54936 * 64.84254 * 14 13 12 16 16 H 1.07998 * 120.00225 * 266.80144 * 15 14 13 17 17 C 1.37876 * 119.99634 * 86.79934 * 15 14 13 18 18 N 1.31520 * 119.99552 * 178.76525 * 17 15 14 19 19 Si 1.86804 * 120.00281 * 358.77370 * 17 15 14 20 20 H 1.48494 * 109.47406 * 91.37328 * 19 17 15 21 21 H 1.48503 * 109.46840 * 211.37394 * 19 17 15 22 22 H 1.48494 * 109.46821 * 331.36891 * 19 17 15 23 23 C 1.52996 * 117.49758 * 279.17155 * 14 13 12 24 24 C 1.52998 * 117.49695 * 210.51452 * 14 13 12 25 25 H 1.09002 * 109.47146 * 59.99726 * 1 2 3 26 26 H 1.08994 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46605 * 300.00332 * 1 2 3 28 28 H 1.08998 * 109.47130 * 59.99416 * 5 3 2 29 29 H 1.09004 * 109.46571 * 299.99908 * 5 3 2 30 30 H 1.09003 * 109.46967 * 60.00098 * 7 6 5 31 31 H 1.08995 * 109.46935 * 300.00125 * 7 6 5 32 32 H 1.08996 * 109.46976 * 305.00389 * 8 7 6 33 33 H 1.09000 * 109.46797 * 184.99796 * 8 7 6 34 34 H 0.96996 * 120.00033 * 359.97438 * 9 8 7 35 35 H 0.96999 * 120.00377 * 354.92014 * 12 10 9 36 36 H 1.08998 * 109.46889 * 305.07936 * 13 12 10 37 37 H 1.09002 * 109.46788 * 65.07769 * 13 12 10 38 38 H 0.97005 * 119.99719 * 180.02562 * 18 17 15 39 39 H 1.09004 * 117.50109 * 0.02562 * 23 14 13 40 40 H 1.08996 * 117.49781 * 145.02314 * 23 14 13 41 41 H 1.09002 * 117.49646 * 214.98153 * 24 14 13 42 42 H 1.09004 * 117.49998 * 359.97122 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 8 3.9715 2.6451 -0.0011 7 6 5.3883 2.8323 -0.0011 8 6 5.7049 4.3293 -0.0022 9 7 5.2347 4.9287 1.2491 10 6 5.4076 6.2467 1.4714 11 8 5.8696 6.9552 0.5980 12 7 5.0681 6.7794 2.6620 13 6 5.3529 8.1890 2.9418 14 6 4.9871 8.5049 4.3934 15 6 5.8038 7.7911 5.4396 16 1 5.4556 6.8551 5.8506 17 6 6.9956 8.3331 5.8719 18 7 7.6963 7.7225 6.8024 19 14 7.6147 9.9347 5.1363 20 1 7.1212 11.0758 5.9482 21 1 9.0997 9.9358 5.1319 22 1 7.1156 10.0653 3.7439 23 6 3.5140 8.7727 4.7085 24 6 4.5196 9.9268 4.7108 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9558 0.7808 -0.8908 29 1 3.9564 0.7805 0.8892 30 1 5.8158 2.3702 -0.8909 31 1 5.8157 2.3709 0.8891 32 1 5.2035 4.8060 -0.8444 33 1 6.7817 4.4727 -0.0918 34 1 4.7991 4.3771 1.9175 35 1 4.6318 6.2305 3.3323 36 1 6.4136 8.3837 2.7838 37 1 4.7646 8.8180 2.2737 38 1 8.5347 8.1040 7.1069 39 1 2.8054 8.7235 3.8816 40 1 3.1358 8.4330 5.6726 41 1 4.8026 10.3458 5.6764 42 1 4.4732 10.6373 3.8854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599048122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:07 Heat of formation + Delta-G solvation = -128.398377 kcal Electronic energy + Delta-G solvation = -24035.888328 eV Core-core repulsion = 20210.826582 eV Total energy + Delta-G solvation = -3825.061746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78649 -39.50763 -38.36719 -37.09605 -36.67070 -34.45426 -33.31294 -32.09439 -30.45756 -28.93887 -27.02044 -26.35388 -25.00030 -22.63487 -21.68601 -21.59714 -20.37272 -19.24053 -18.18279 -17.76083 -17.36749 -17.20481 -16.71474 -16.44280 -16.10960 -15.39019 -15.14303 -14.73001 -14.46221 -14.11215 -13.87484 -13.61736 -13.29353 -13.18291 -12.83364 -12.69655 -12.49644 -12.39873 -12.25104 -11.93586 -11.55763 -11.19245 -11.11838 -10.73522 -10.71789 -10.47677 -10.21320 -10.13464 -9.76873 -9.55396 -9.13875 -8.84083 -8.60130 -8.55460 -8.06914 -6.13035 -4.16991 1.82839 1.93471 3.17752 3.31770 3.41643 3.48599 3.50410 3.79226 4.33213 4.43348 4.58908 4.62152 4.67869 4.72818 4.77720 4.82051 4.92186 5.01769 5.11839 5.14287 5.17738 5.57119 5.75018 5.81540 5.94550 6.07242 6.12366 6.33617 6.47155 6.53765 6.55542 6.74323 6.78638 7.05452 7.13095 7.26527 7.39628 7.50191 7.71754 8.44456 8.62432 8.87093 9.17017 9.50515 10.98367 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.002802 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.205093 B = 9991.179205 C =10387.082310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.481 6.481 5 C 0.072 3.928 6 O -0.364 6.364 7 C 0.051 3.949 8 C 0.145 3.855 9 N -0.748 5.748 10 C 0.702 3.298 11 O -0.607 6.607 12 N -0.719 5.719 13 C 0.175 3.825 14 C -0.016 4.016 15 C -0.487 4.487 16 H 0.077 0.923 17 C 0.079 3.921 18 N -0.897 5.897 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.256 1.256 23 C -0.179 4.179 24 C -0.192 4.192 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -16.766 -13.482 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.298 3.702 4 O -0.365 6.365 5 C -0.006 4.006 6 O -0.283 6.283 7 C -0.026 4.026 8 C 0.020 3.980 9 N -0.406 5.406 10 C 0.402 3.598 11 O -0.487 6.487 12 N -0.372 5.372 13 C 0.051 3.949 14 C -0.017 4.017 15 C -0.525 4.525 16 H 0.095 0.905 17 C -0.124 4.124 18 N -0.534 5.534 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.180 1.180 23 C -0.216 4.216 24 C -0.230 4.230 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.800 -15.624 -14.160 22.849 hybrid contribution 0.019 0.161 0.404 0.435 sum -8.782 -15.463 -13.757 22.483 Atomic orbital electron populations 1.23307 0.75554 1.03858 1.02907 1.86441 1.23945 1.32894 1.84558 1.23284 0.91523 0.81753 0.73590 1.90748 1.66686 1.36163 1.42936 1.21640 0.88347 0.86277 1.04323 1.88045 1.22925 1.21693 1.95615 1.22964 0.80466 0.97305 1.01845 1.21101 0.99799 0.89535 0.87517 1.44941 1.66280 1.08130 1.21209 1.15966 0.79074 0.81584 0.83192 1.90862 1.52848 1.60165 1.44775 1.44961 1.64151 1.13265 1.14825 1.21000 1.00078 0.78960 0.94840 1.19637 0.93879 0.95213 0.93011 1.20182 1.04280 1.08271 1.19719 0.90475 1.24964 0.96105 0.97243 0.94054 1.69893 1.14865 1.39724 1.28948 0.86854 0.77375 0.83962 0.81159 1.20449 1.22082 1.17963 1.22838 0.93086 1.04089 1.01586 1.22949 1.06168 0.92037 1.01881 0.91725 0.87822 0.91599 0.88794 0.88626 0.91035 0.91708 0.90824 0.89906 0.76843 0.76719 0.91852 0.94213 0.92554 0.90828 0.89466 0.89182 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -2.98 10.57 -39.24 -0.41 -3.39 16 3 C 0.46 4.61 8.03 36.01 0.29 4.90 16 4 O -0.48 -6.87 16.25 -25.48 -0.41 -7.28 16 5 C 0.07 0.51 6.53 36.01 0.24 0.75 16 6 O -0.36 -3.78 9.82 -55.19 -0.54 -4.32 16 7 C 0.05 0.41 6.07 37.16 0.23 0.63 16 8 C 0.15 1.74 6.07 -4.04 -0.02 1.71 16 9 N -0.75 -11.08 5.51 -65.22 -0.36 -11.44 16 10 C 0.70 13.70 8.55 -86.92 -0.74 12.96 16 11 O -0.61 -13.96 16.36 5.29 0.09 -13.88 16 12 N -0.72 -14.22 5.46 -65.22 -0.36 -14.57 16 13 C 0.18 3.87 5.12 -4.04 -0.02 3.85 16 14 C -0.02 -0.36 0.81 -155.66 -0.13 -0.49 16 15 C -0.49 -13.00 9.29 -34.44 -0.32 -13.32 16 16 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 19 Si 0.88 21.75 24.88 -169.99 -4.23 17.52 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.12 5.73 56.52 0.32 -5.79 16 23 C -0.18 -3.54 9.96 -26.70 -0.27 -3.80 16 24 C -0.19 -4.05 7.60 -26.70 -0.20 -4.25 16 25 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 26 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 5.12 8.49 -40.82 -0.35 4.78 16 35 H 0.40 7.26 8.47 -40.82 -0.35 6.91 16 36 H 0.06 1.55 6.65 -51.93 -0.35 1.20 16 37 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.09 1.97 7.27 -51.93 -0.38 1.59 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -36.10 359.85 -6.56 -42.66 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.54 Total: 8.93 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.02 Total: 6.35 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.06 Total: -52.00 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.28 Total: -28.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.23 Total: 17.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.10 -6.56 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599048122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.738 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds