Wall clock time and date at job start Tue Mar 31 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39692 * 120.98527 * 173.84424 * 3 2 1 5 5 C 1.38202 * 119.12928 * 179.97438 * 4 3 2 6 6 N 1.31926 * 121.20208 * 0.02562 * 5 4 3 7 7 C 1.31691 * 122.19933 * 359.66220 * 6 5 4 8 8 C 1.39394 * 120.70769 * 0.62645 * 7 6 5 9 9 C 1.47788 * 120.62948 * 179.68139 * 8 7 6 10 10 O 1.21551 * 119.99751 * 133.60939 * 9 8 7 11 11 N 1.34770 * 120.00259 * 313.60889 * 9 8 7 12 12 C 1.47088 * 120.88181 * 354.45058 * 11 9 8 13 13 C 1.53231 * 108.52367 * 231.16247 * 12 11 9 14 14 N 1.46895 * 109.34284 * 306.17351 * 13 12 11 15 15 C 1.46900 * 111.00108 * 187.25408 * 14 13 12 16 16 C 1.50700 * 109.47274 * 65.69952 * 15 14 13 17 17 H 1.08000 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00236 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99757 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46979 * 59.99727 * 20 18 16 22 22 H 1.48499 * 109.47154 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46872 * 299.99464 * 20 18 16 24 24 C 1.46896 * 111.27067 * 63.09851 * 14 13 12 25 25 C 1.47076 * 120.88228 * 174.43168 * 11 9 8 26 26 H 1.08002 * 120.43228 * 359.95234 * 4 3 2 27 27 H 1.08003 * 119.40027 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.63958 * 180.33478 * 7 6 5 29 29 H 1.09002 * 109.62776 * 350.88112 * 12 11 9 30 30 H 1.09006 * 109.62548 * 111.45233 * 12 11 9 31 31 H 1.08995 * 109.49371 * 66.13359 * 13 12 11 32 32 H 1.09003 * 109.49354 * 186.21350 * 13 12 11 33 33 H 1.09002 * 109.47224 * 185.69597 * 15 14 13 34 34 H 1.08997 * 109.47173 * 305.69552 * 15 14 13 35 35 H 0.96999 * 119.99481 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.49477 * 176.93610 * 24 14 13 37 37 H 1.09004 * 109.48748 * 56.85987 * 24 14 13 38 38 H 1.09008 * 109.62657 * 248.54638 * 25 11 9 39 39 H 1.08997 * 109.62919 * 9.12490 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2866 1.1916 -0.1284 5 6 4.6679 1.1478 -0.1231 6 7 5.3150 0.0048 0.0002 7 6 4.6881 -1.1460 0.1304 8 6 3.2952 -1.2019 0.1300 9 6 2.5935 -2.4950 0.2692 10 8 1.6624 -2.6009 1.0433 11 7 2.9859 -3.5569 -0.4621 12 6 4.0285 -3.4213 -1.4908 13 6 3.5039 -4.0244 -2.7981 14 7 3.0496 -5.3994 -2.5516 15 6 2.6995 -6.0717 -3.8100 16 6 3.9387 -6.2411 -4.6507 17 1 4.8910 -5.8845 -4.2868 18 6 3.8566 -6.8502 -5.8849 19 7 2.6968 -7.2839 -6.3282 20 14 5.3925 -7.0595 -6.9273 21 1 6.3848 -7.8801 -6.1875 22 1 5.0386 -7.7392 -8.1993 23 1 5.9751 -5.7261 -7.2235 24 6 1.9236 -5.4277 -1.6087 25 6 2.3833 -4.8820 -0.2526 26 1 2.7695 2.1342 -0.2309 27 1 5.2279 2.0660 -0.2225 28 1 5.2593 -2.0567 0.2339 29 1 4.2599 -2.3667 -1.6408 30 1 4.9255 -3.9545 -1.1755 31 1 2.6703 -3.4263 -3.1658 32 1 4.3017 -4.0326 -3.5408 33 1 2.2717 -7.0503 -3.5923 34 1 1.9713 -5.4695 -4.3533 35 1 2.6391 -7.7128 -7.1963 36 1 1.5751 -6.4535 -1.4888 37 1 1.1118 -4.8100 -1.9930 38 1 3.1222 -5.5557 0.1817 39 1 1.5270 -4.7933 0.4159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:56 Heat of formation + Delta-G solvation = 53.838040 kcal Electronic energy + Delta-G solvation = -23781.386966 eV Core-core repulsion = 20303.829255 eV Total energy + Delta-G solvation = -3477.557711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26208 -39.55769 -37.68702 -36.85596 -34.62563 -33.21999 -32.69307 -32.06758 -30.69140 -28.41734 -26.16101 -25.25325 -24.52750 -23.40911 -22.15602 -21.00133 -19.93799 -18.91851 -17.77045 -17.03450 -16.44922 -16.18879 -15.69800 -15.29388 -14.91219 -14.77592 -14.56927 -14.50768 -13.98387 -13.91368 -13.68793 -13.50930 -13.42500 -13.27630 -12.90235 -12.40667 -12.35239 -11.97730 -11.37736 -11.19374 -11.08088 -10.84181 -10.71572 -10.63878 -10.46690 -10.29081 -9.94719 -9.89357 -9.59164 -9.34882 -8.68045 -8.50444 -7.42354 -6.10214 -4.12909 0.00380 0.37305 2.31680 2.43715 2.65926 2.80845 3.28193 3.30610 3.33371 3.35079 3.42474 3.83213 4.12097 4.27780 4.34681 4.39231 4.68423 4.74229 5.05414 5.07734 5.16420 5.23803 5.28353 5.34660 5.45487 5.53264 5.62068 5.74706 5.88560 5.93102 6.19254 6.33687 6.35788 6.49919 7.13615 7.14059 7.20660 7.26772 7.31704 7.67832 7.91292 7.94017 8.05095 8.40499 8.93742 9.51919 11.00536 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.003752 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.961333 B = 7460.579377 C = 8124.212095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C 0.243 3.757 3 C 0.070 3.930 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.466 5.466 7 C 0.142 3.858 8 C -0.135 4.135 9 C 0.554 3.446 10 O -0.530 6.530 11 N -0.595 5.595 12 C 0.102 3.898 13 C 0.050 3.950 14 N -0.534 5.534 15 C 0.194 3.806 16 C -0.512 4.512 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.040 3.960 25 C 0.118 3.882 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.025 0.975 32 H 0.101 0.899 33 H 0.033 0.967 34 H -0.009 1.009 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.027 0.973 38 H 0.080 0.920 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 15.433 12.440 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.073 4.073 3 C 0.059 3.941 4 C -0.154 4.154 5 C -0.034 4.034 6 N -0.174 5.174 7 C -0.016 4.016 8 C -0.143 4.143 9 C 0.340 3.660 10 O -0.407 6.407 11 N -0.327 5.327 12 C -0.021 4.021 13 C -0.079 4.079 14 N -0.259 5.259 15 C 0.069 3.931 16 C -0.550 4.550 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.090 4.090 25 C -0.004 4.004 26 H 0.171 0.829 27 H 0.190 0.810 28 H 0.192 0.808 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.226 14.997 12.886 20.219 hybrid contribution -0.436 0.184 -1.159 1.252 sum 3.790 15.181 11.726 19.554 Atomic orbital electron populations 1.81224 1.11630 1.06194 1.05876 1.25163 0.92243 0.94698 0.95237 1.16106 0.85355 0.93525 0.99160 1.22259 0.95734 0.97648 0.99769 1.23017 0.90904 0.96811 0.92675 1.67702 1.40841 0.98354 1.10480 1.23150 0.89375 0.97094 0.91989 1.21102 0.95825 0.93694 1.03665 1.17995 0.83356 0.83224 0.81383 1.90828 1.28041 1.83840 1.38021 1.48167 1.39378 1.09001 1.36198 1.22283 0.90633 1.00956 0.88201 1.22329 1.00664 0.89782 0.95155 1.62104 1.33555 1.14652 1.15598 1.19733 0.96314 0.93485 0.83584 1.21079 0.94335 1.38605 1.01019 0.91789 1.24995 0.96204 0.95521 0.97777 1.69949 1.23962 1.39863 1.19859 0.86550 0.83039 0.78356 0.79403 1.20082 1.21361 1.20228 1.22414 0.93141 1.00912 0.92499 1.21865 0.98952 0.81508 0.98026 0.82870 0.80952 0.80797 0.90219 0.89703 0.95714 0.88093 0.94932 0.99093 0.92762 0.89747 0.95495 0.90200 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.24 3.22 13.81 -22.47 -0.31 2.91 16 3 C 0.07 0.72 5.78 -106.33 -0.61 0.11 16 4 C -0.13 -0.85 9.85 -39.05 -0.38 -1.24 16 5 C 0.12 0.73 11.16 -17.52 -0.20 0.54 16 6 N -0.47 -3.90 10.32 -12.98 -0.13 -4.04 16 7 C 0.14 1.27 8.73 -17.18 -0.15 1.12 16 8 C -0.14 -1.50 4.93 -104.46 -0.51 -2.01 16 9 C 0.55 7.87 6.88 -12.36 -0.09 7.78 16 10 O -0.53 -9.24 15.45 5.32 0.08 -9.16 16 11 N -0.60 -8.27 3.01 -173.60 -0.52 -8.80 16 12 C 0.10 1.31 5.28 -3.60 -0.02 1.29 16 13 C 0.05 0.86 5.46 -3.71 -0.02 0.84 16 14 N -0.53 -10.56 4.62 -235.78 -1.09 -11.65 16 15 C 0.19 4.79 4.72 -4.98 -0.02 4.77 16 16 C -0.51 -13.55 8.41 -34.44 -0.29 -13.84 16 17 H 0.06 1.64 7.13 -52.49 -0.37 1.27 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 25 C 0.12 1.72 6.61 -3.61 -0.02 1.69 16 26 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 27 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 28 H 0.18 1.30 7.17 -52.48 -0.38 0.92 16 29 H 0.08 0.85 5.23 -51.93 -0.27 0.58 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 33 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -33.15 333.10 -7.56 -40.71 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.66 Total: -3.61 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.75 Total: 6.07 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.23 Total: -54.75 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.15 -7.56 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.549 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds