Wall clock time and date at job start Tue Mar 31 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39692 * 120.98527 * 173.84424 * 3 2 1 5 5 C 1.38202 * 119.12928 * 179.97438 * 4 3 2 6 6 N 1.31926 * 121.20208 * 0.02562 * 5 4 3 7 7 C 1.31691 * 122.19933 * 359.66220 * 6 5 4 8 8 C 1.39394 * 120.70769 * 0.62645 * 7 6 5 9 9 C 1.47788 * 120.62948 * 179.68139 * 8 7 6 10 10 O 1.21551 * 119.99751 * 133.60939 * 9 8 7 11 11 N 1.34770 * 120.00259 * 313.60889 * 9 8 7 12 12 C 1.47088 * 120.88181 * 354.45058 * 11 9 8 13 13 C 1.53231 * 108.52367 * 231.16247 * 12 11 9 14 14 N 1.46895 * 109.34284 * 306.17351 * 13 12 11 15 15 C 1.46900 * 111.00108 * 187.25408 * 14 13 12 16 16 C 1.50700 * 109.47274 * 65.69952 * 15 14 13 17 17 H 1.08000 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00236 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99757 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46979 * 59.99727 * 20 18 16 22 22 H 1.48499 * 109.47154 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46872 * 299.99464 * 20 18 16 24 24 C 1.46896 * 111.27067 * 63.09851 * 14 13 12 25 25 C 1.47076 * 120.88228 * 174.43168 * 11 9 8 26 26 H 1.08002 * 120.43228 * 359.95234 * 4 3 2 27 27 H 1.08003 * 119.40027 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.63958 * 180.33478 * 7 6 5 29 29 H 1.09002 * 109.62776 * 350.88112 * 12 11 9 30 30 H 1.09006 * 109.62548 * 111.45233 * 12 11 9 31 31 H 1.08995 * 109.49371 * 66.13359 * 13 12 11 32 32 H 1.09003 * 109.49354 * 186.21350 * 13 12 11 33 33 H 1.09002 * 109.47224 * 185.69597 * 15 14 13 34 34 H 1.08997 * 109.47173 * 305.69552 * 15 14 13 35 35 H 0.96999 * 119.99481 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.49477 * 176.93610 * 24 14 13 37 37 H 1.09004 * 109.48748 * 56.85987 * 24 14 13 38 38 H 1.09008 * 109.62657 * 248.54638 * 25 11 9 39 39 H 1.08997 * 109.62919 * 9.12490 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2866 1.1916 -0.1284 5 6 4.6679 1.1478 -0.1231 6 7 5.3150 0.0048 0.0002 7 6 4.6881 -1.1460 0.1304 8 6 3.2952 -1.2019 0.1300 9 6 2.5935 -2.4950 0.2692 10 8 1.6624 -2.6009 1.0433 11 7 2.9859 -3.5569 -0.4621 12 6 4.0285 -3.4213 -1.4908 13 6 3.5039 -4.0244 -2.7981 14 7 3.0496 -5.3994 -2.5516 15 6 2.6995 -6.0717 -3.8100 16 6 3.9387 -6.2411 -4.6507 17 1 4.8910 -5.8845 -4.2868 18 6 3.8566 -6.8502 -5.8849 19 7 2.6968 -7.2839 -6.3282 20 14 5.3925 -7.0595 -6.9273 21 1 6.3848 -7.8801 -6.1875 22 1 5.0386 -7.7392 -8.1993 23 1 5.9751 -5.7261 -7.2235 24 6 1.9236 -5.4277 -1.6087 25 6 2.3833 -4.8820 -0.2526 26 1 2.7695 2.1342 -0.2309 27 1 5.2279 2.0660 -0.2225 28 1 5.2593 -2.0567 0.2339 29 1 4.2599 -2.3667 -1.6408 30 1 4.9255 -3.9545 -1.1755 31 1 2.6703 -3.4263 -3.1658 32 1 4.3017 -4.0326 -3.5408 33 1 2.2717 -7.0503 -3.5923 34 1 1.9713 -5.4695 -4.3533 35 1 2.6391 -7.7128 -7.1963 36 1 1.5751 -6.4535 -1.4888 37 1 1.1118 -4.8100 -1.9930 38 1 3.1222 -5.5557 0.1817 39 1 1.5270 -4.7933 0.4159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:55 Heat of formation + Delta-G solvation = 29.896926 kcal Electronic energy + Delta-G solvation = -23782.425131 eV Core-core repulsion = 20303.829255 eV Total energy + Delta-G solvation = -3478.595876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11533 -40.55454 -39.03329 -37.91248 -36.10263 -34.51001 -33.95261 -33.07591 -31.84017 -30.05711 -27.61156 -26.22468 -25.40868 -24.71557 -23.77266 -22.32629 -20.92170 -19.89808 -18.77244 -18.49190 -17.83135 -17.31795 -16.71954 -16.43044 -16.26973 -16.03930 -15.63981 -15.48148 -15.38352 -15.34678 -14.87811 -14.47185 -14.41732 -14.28649 -14.21382 -13.99085 -13.56160 -13.14234 -13.06168 -12.79809 -12.59423 -12.43715 -12.35368 -12.18506 -11.81861 -11.43819 -11.30888 -11.04209 -10.66055 -10.60248 -10.27638 -9.90063 -9.12298 -8.19295 -6.30146 -0.75383 -0.22775 1.31663 1.41350 1.45492 1.48570 1.56130 1.74863 1.80381 2.42300 2.46931 2.69763 3.06243 3.12964 3.20011 3.43650 3.62759 3.75322 3.87825 3.97178 4.12086 4.18078 4.25946 4.37753 4.43862 4.47965 4.63023 4.66788 4.78497 4.86225 4.90191 4.97026 5.16268 5.18567 5.33231 5.41097 5.64002 6.00905 6.11022 6.16235 6.27071 6.51716 6.71383 6.82887 6.85618 7.40306 8.92078 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.003752 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.961333 B = 7460.579377 C = 8124.212095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.261 3.739 3 C 0.048 3.952 4 C -0.109 4.109 5 C 0.140 3.860 6 N -0.474 5.474 7 C 0.148 3.852 8 C -0.155 4.155 9 C 0.555 3.445 10 O -0.570 6.570 11 N -0.598 5.598 12 C 0.115 3.885 13 C 0.048 3.952 14 N -0.532 5.532 15 C 0.207 3.793 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.000 4.000 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.263 1.263 24 C 0.042 3.958 25 C 0.128 3.872 26 H 0.187 0.813 27 H 0.218 0.782 28 H 0.189 0.811 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.006 0.994 32 H 0.093 0.907 33 H 0.005 0.995 34 H -0.045 1.045 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.006 0.994 38 H 0.099 0.901 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 17.731 12.996 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.054 4.054 3 C 0.036 3.964 4 C -0.131 4.131 5 C -0.017 4.017 6 N -0.182 5.182 7 C -0.009 4.009 8 C -0.162 4.162 9 C 0.343 3.657 10 O -0.450 6.450 11 N -0.330 5.330 12 C -0.006 4.006 13 C -0.081 4.081 14 N -0.256 5.256 15 C 0.081 3.919 16 C -0.559 4.559 17 H 0.093 0.907 18 C -0.198 4.198 19 N -0.579 5.579 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.188 1.188 24 C -0.088 4.088 25 C 0.006 3.994 26 H 0.204 0.796 27 H 0.234 0.766 28 H 0.206 0.794 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.024 0.976 32 H 0.111 0.889 33 H 0.023 0.977 34 H -0.027 1.027 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.024 0.976 38 H 0.117 0.883 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.824 17.307 13.461 23.280 hybrid contribution -1.546 -0.425 -1.307 2.069 sum 6.278 16.881 12.154 21.728 Atomic orbital electron populations 1.81223 1.13372 1.07981 1.08191 1.25753 0.92985 0.93114 0.93571 1.16354 0.83808 0.94957 1.01271 1.22666 0.95974 0.97351 0.97073 1.23790 0.90775 0.97503 0.89641 1.67825 1.40990 0.98777 1.10651 1.23294 0.88160 0.98143 0.91309 1.20862 0.96656 0.92053 1.06670 1.18474 0.82717 0.84086 0.80405 1.90805 1.29938 1.84558 1.39717 1.48224 1.39522 1.08787 1.36434 1.22282 0.90456 1.02586 0.85316 1.22399 0.99706 0.88147 0.97840 1.62047 1.34063 1.16181 1.13334 1.19393 0.95064 0.92049 0.85421 1.21430 0.94964 1.38129 1.01346 0.90736 1.25963 0.99453 0.95100 0.99265 1.70105 1.26505 1.40969 1.20360 0.85400 0.78913 0.78869 0.77242 1.19012 1.21568 1.18758 1.22451 0.91969 1.00909 0.93436 1.21717 0.99584 0.82392 0.95756 0.79584 0.76587 0.79446 0.87418 0.87373 0.97574 0.88864 0.97686 1.02734 0.92807 0.89721 0.97551 0.88252 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.89 18.54 19.00 0.35 -13.54 16 2 C 0.26 6.88 13.81 88.33 1.22 8.10 16 3 C 0.05 0.89 5.78 -20.97 -0.12 0.77 16 4 C -0.11 -0.95 9.85 22.61 0.22 -0.73 16 5 C 0.14 0.93 11.16 84.67 0.95 1.88 16 6 N -0.47 -5.84 10.32 -194.97 -2.01 -7.86 16 7 C 0.15 2.16 8.73 84.99 0.74 2.90 16 8 C -0.15 -3.14 4.93 -19.76 -0.10 -3.23 16 9 C 0.55 15.45 6.88 86.77 0.60 16.05 16 10 O -0.57 -20.22 15.45 -3.87 -0.06 -20.28 16 11 N -0.60 -16.11 3.01 -821.42 -2.47 -18.59 16 12 C 0.12 2.73 5.28 86.34 0.46 3.19 16 13 C 0.05 1.65 5.46 86.38 0.47 2.12 16 14 N -0.53 -21.48 4.62 -899.86 -4.16 -25.64 16 15 C 0.21 10.72 4.72 85.56 0.40 11.13 16 16 C -0.52 -27.90 8.41 25.60 0.22 -27.68 16 17 H 0.07 3.76 7.13 -2.91 -0.02 3.74 16 18 C 0.00 0.00 5.46 84.65 0.46 0.46 16 19 N -0.94 -55.80 13.29 21.45 0.28 -55.52 16 20 Si 0.97 42.30 29.54 68.60 2.03 44.32 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 C 0.04 1.48 5.62 86.38 0.49 1.97 16 25 C 0.13 3.69 6.61 86.35 0.57 4.26 16 26 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 27 H 0.22 -0.43 8.06 -2.91 -0.02 -0.45 16 28 H 0.19 2.12 7.17 -2.91 -0.02 2.10 16 29 H 0.11 2.00 5.23 -2.39 -0.01 1.98 16 30 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 3.35 6.67 -2.39 -0.02 3.34 16 33 H 0.01 0.28 7.97 -2.39 -0.02 0.26 16 34 H -0.05 -2.61 8.12 -2.39 -0.02 -2.63 16 35 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 37 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.09 2.62 7.04 -2.39 -0.02 2.60 16 Total: -1.00 -76.52 333.10 1.61 -74.90 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.08 Total: 1.01 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.57 Total: 21.18 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -8.01 Total: -121.14 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.52 1.61 -74.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.798 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds