Wall clock time and date at job start Tue Mar 31 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47368 * 54.99898 * 12 11 10 14 14 N 1.46894 * 109.47178 * 294.99151 * 12 11 10 15 15 C 1.50708 * 109.46884 * 174.99777 * 12 11 10 16 16 O 1.21271 * 119.99930 * 100.00066 * 15 12 11 17 17 N 1.34778 * 119.99568 * 279.99644 * 15 12 11 18 18 C 1.46502 * 119.99726 * 180.02562 * 17 15 12 19 19 C 1.50695 * 110.45724 * 300.70303 * 18 17 15 20 20 O 1.20826 * 119.99988 * 214.29787 * 19 18 17 21 21 O 1.34235 * 120.00440 * 34.29973 * 19 18 17 22 22 C 1.54511 * 110.51198 * 178.09789 * 18 17 15 23 23 C 1.54482 * 104.06174 * 241.35557 * 22 18 17 24 24 O 1.44430 * 104.80249 * 23.97811 * 23 22 18 25 25 C 1.44785 * 105.29759 * 319.45337 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 32 32 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 33 33 H 1.00906 * 111.00435 * 176.04614 * 14 12 11 34 34 H 1.00896 * 111.00697 * 300.00280 * 14 12 11 35 35 H 0.96996 * 120.00205 * 0.02562 * 17 15 12 36 36 H 0.96694 * 117.00196 * 179.97438 * 21 19 18 37 37 H 1.08998 * 110.50688 * 359.97438 * 22 18 17 38 38 H 1.08999 * 110.50920 * 122.71142 * 22 18 17 39 39 H 1.08997 * 110.36958 * 142.80767 * 23 22 18 40 40 H 1.08998 * 110.37379 * 265.14826 * 23 22 18 41 41 H 1.09000 * 110.42401 * 281.77917 * 25 24 23 42 42 H 1.08993 * 110.48841 * 159.32597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 1 3.1577 -6.0470 0.8213 14 7 3.2382 -6.1363 -1.2761 15 6 1.7247 -7.4522 0.0959 16 8 1.5132 -8.1213 -0.8931 17 7 1.2895 -7.8729 1.3001 18 6 0.5613 -9.1390 1.4143 19 6 -0.6868 -9.1068 0.5705 20 8 -1.6822 -9.6823 0.9419 21 8 -0.6929 -8.4387 -0.5938 22 6 0.2095 -9.4300 2.8904 23 6 0.9427 -10.7547 3.1970 24 8 2.0264 -10.8058 2.2436 25 6 1.4643 -10.3220 1.0001 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.8531 -5.0490 0.8724 32 1 0.8537 -5.0406 -0.9075 33 1 3.9460 -6.8555 -1.2765 34 1 2.6266 -6.2305 -2.0730 35 1 1.4584 -7.3375 2.0910 36 1 -1.5165 -8.4468 -1.1003 37 1 0.5777 -8.6320 3.5352 38 1 -0.8670 -9.5528 3.0094 39 1 1.3327 -10.7457 4.2147 40 1 0.2715 -11.6017 3.0543 41 1 0.8721 -11.1020 0.5214 42 1 2.2545 -9.9803 0.3317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691564301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:41 Heat of formation + Delta-G solvation = -178.570372 kcal Electronic energy + Delta-G solvation = -25270.323575 eV Core-core repulsion = 21443.086208 eV Total energy + Delta-G solvation = -3827.237367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57770 -39.66843 -39.05835 -36.32996 -35.78660 -34.97150 -33.34979 -31.47264 -31.36274 -29.60058 -27.84030 -25.30762 -24.52820 -23.60217 -22.50310 -20.67612 -20.06930 -20.02012 -18.69625 -17.67101 -17.32502 -16.96452 -16.34352 -16.28159 -15.84636 -15.50170 -15.37663 -14.77452 -14.63054 -14.43298 -13.97329 -13.62642 -13.29875 -13.16419 -12.93045 -12.41146 -12.34488 -12.24228 -11.83676 -11.76960 -11.57137 -11.52486 -11.16723 -11.03423 -10.75716 -10.60982 -10.43003 -10.39412 -10.19590 -9.62170 -9.45437 -9.23346 -9.05386 -8.59793 -8.30482 -5.96297 -3.97884 1.73725 2.42386 2.69427 2.79044 3.34531 3.40590 3.44154 3.46401 3.67540 4.18691 4.47247 4.49800 4.56065 4.59403 4.74550 4.79804 5.04187 5.15526 5.20670 5.25514 5.28835 5.34139 5.38750 5.39844 5.90469 5.96135 6.10355 6.18570 6.23405 6.42564 6.80794 6.99229 7.02610 7.22372 7.25237 7.49158 7.62737 7.73772 7.89025 8.01871 8.05278 8.48624 9.09864 9.65980 11.15129 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.002981 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.999063 B = 9389.553339 C = 9570.575024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.102 4.102 12 C 0.081 3.919 13 H 0.101 0.899 14 N -0.810 5.810 15 C 0.483 3.517 16 O -0.514 6.514 17 N -0.717 5.717 18 C 0.153 3.847 19 C 0.485 3.515 20 O -0.517 6.517 21 O -0.474 6.474 22 C -0.153 4.153 23 C 0.046 3.954 24 O -0.363 6.363 25 C 0.056 3.944 26 H 0.259 0.741 27 H 0.011 0.989 28 H 0.013 0.987 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.338 0.662 34 H 0.351 0.649 35 H 0.410 0.590 36 H 0.403 0.597 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -22.538 5.028 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.035 4.035 13 H 0.118 0.882 14 N -0.339 5.339 15 C 0.268 3.732 16 O -0.388 6.388 17 N -0.374 5.374 18 C 0.064 3.936 19 C 0.325 3.675 20 O -0.405 6.405 21 O -0.283 6.283 22 C -0.191 4.191 23 C -0.031 4.031 24 O -0.282 6.282 25 C -0.022 4.022 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.247 0.753 36 H 0.261 0.739 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.608 -22.361 4.838 22.935 hybrid contribution -0.867 0.301 -0.078 0.921 sum 0.741 -22.061 4.759 22.581 Atomic orbital electron populations 1.69970 1.06063 1.26465 1.51244 1.25035 0.94830 0.99237 0.95485 0.86613 0.79853 0.83551 0.78091 1.20703 1.21343 1.19867 1.21288 0.93089 0.91105 1.50025 0.92642 1.19116 0.94098 0.91659 0.96879 1.21543 0.98769 0.92318 1.01176 1.21634 0.96470 0.93949 1.01945 1.21757 0.95748 0.90545 0.95422 0.88158 1.59030 1.17297 1.54270 1.03260 1.22675 0.78965 0.89107 0.82413 1.90689 1.54806 1.57148 1.36134 1.46281 1.58170 1.21478 1.11473 1.21404 0.88576 0.88482 0.95171 1.23317 0.88970 0.74881 0.80329 1.90719 1.34684 1.43186 1.71937 1.84927 1.43507 1.67599 1.32226 1.23327 1.04445 0.99971 0.91329 1.23492 0.89079 0.95861 0.94705 1.89271 1.32973 1.86173 1.19742 1.23732 0.97647 0.92701 0.88108 0.93118 0.97028 0.96813 0.91812 0.93679 0.92110 0.91827 0.84983 0.83472 0.75342 0.73902 0.88385 0.87302 0.87860 0.91286 0.90947 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.98 5.04 -26.74 -0.13 -2.12 16 11 C -0.10 -1.59 4.84 -26.73 -0.13 -1.72 16 12 C 0.08 1.01 3.15 -68.86 -0.22 0.79 16 13 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 14 N -0.81 -10.20 8.44 -5.65 -0.05 -10.25 16 15 C 0.48 5.74 5.83 -10.98 -0.06 5.67 16 16 O -0.51 -7.10 12.16 -18.88 -0.23 -7.33 16 17 N -0.72 -6.95 5.15 -47.22 -0.24 -7.19 16 18 C 0.15 1.51 0.99 -131.40 -0.13 1.37 16 19 C 0.48 5.67 7.05 36.00 0.25 5.92 16 20 O -0.52 -6.85 16.34 -18.75 -0.31 -7.16 16 21 O -0.47 -5.51 9.65 -47.36 -0.46 -5.97 16 22 C -0.15 -1.14 6.40 -25.16 -0.16 -1.30 16 23 C 0.05 0.32 7.63 37.94 0.29 0.61 16 24 O -0.36 -3.59 11.66 -35.23 -0.41 -4.00 16 25 C 0.06 0.56 6.49 37.94 0.25 0.81 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.34 3.65 9.06 -39.29 -0.36 3.29 16 34 H 0.35 4.61 8.58 -39.29 -0.34 4.27 16 35 H 0.41 3.14 8.14 -40.82 -0.33 2.81 16 36 H 0.40 3.18 9.10 45.56 0.41 3.60 16 37 H 0.10 0.55 7.53 -51.93 -0.39 0.16 16 38 H 0.11 0.87 6.77 -51.93 -0.35 0.52 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.70 7.86 -51.93 -0.41 0.30 16 42 H 0.11 1.26 6.64 -51.93 -0.34 0.91 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -34.51 347.14 -6.78 -41.28 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.43 Total: 8.10 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.60 Total: -3.08 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.45 Total: -43.81 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.40 Total: -24.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.51 -6.78 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691564301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.286 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds