Wall clock time and date at job start Tue Mar 31 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47368 * 54.99898 * 12 11 10 14 14 N 1.46894 * 109.47178 * 294.99151 * 12 11 10 15 15 C 1.50708 * 109.46884 * 174.99777 * 12 11 10 16 16 O 1.21271 * 119.99930 * 100.00066 * 15 12 11 17 17 N 1.34778 * 119.99568 * 279.99644 * 15 12 11 18 18 C 1.46502 * 119.99726 * 180.02562 * 17 15 12 19 19 C 1.50695 * 110.45724 * 300.70303 * 18 17 15 20 20 O 1.20826 * 119.99988 * 214.29787 * 19 18 17 21 21 O 1.34235 * 120.00440 * 34.29973 * 19 18 17 22 22 C 1.54511 * 110.51198 * 178.09789 * 18 17 15 23 23 C 1.54482 * 104.06174 * 241.35557 * 22 18 17 24 24 O 1.44430 * 104.80249 * 23.97811 * 23 22 18 25 25 C 1.44785 * 105.29759 * 319.45337 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 32 32 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 33 33 H 1.00906 * 111.00435 * 176.04614 * 14 12 11 34 34 H 1.00896 * 111.00697 * 300.00280 * 14 12 11 35 35 H 0.96996 * 120.00205 * 0.02562 * 17 15 12 36 36 H 0.96694 * 117.00196 * 179.97438 * 21 19 18 37 37 H 1.08998 * 110.50688 * 359.97438 * 22 18 17 38 38 H 1.08999 * 110.50920 * 122.71142 * 22 18 17 39 39 H 1.08997 * 110.36958 * 142.80767 * 23 22 18 40 40 H 1.08998 * 110.37379 * 265.14826 * 23 22 18 41 41 H 1.09000 * 110.42401 * 281.77917 * 25 24 23 42 42 H 1.08993 * 110.48841 * 159.32597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 1 3.1577 -6.0470 0.8213 14 7 3.2382 -6.1363 -1.2761 15 6 1.7247 -7.4522 0.0959 16 8 1.5132 -8.1213 -0.8931 17 7 1.2895 -7.8729 1.3001 18 6 0.5613 -9.1390 1.4143 19 6 -0.6868 -9.1068 0.5705 20 8 -1.6822 -9.6823 0.9419 21 8 -0.6929 -8.4387 -0.5938 22 6 0.2095 -9.4300 2.8904 23 6 0.9427 -10.7547 3.1970 24 8 2.0264 -10.8058 2.2436 25 6 1.4643 -10.3220 1.0001 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.8531 -5.0490 0.8724 32 1 0.8537 -5.0406 -0.9075 33 1 3.9460 -6.8555 -1.2765 34 1 2.6266 -6.2305 -2.0730 35 1 1.4584 -7.3375 2.0910 36 1 -1.5165 -8.4468 -1.1003 37 1 0.5777 -8.6320 3.5352 38 1 -0.8670 -9.5528 3.0094 39 1 1.3327 -10.7457 4.2147 40 1 0.2715 -11.6017 3.0543 41 1 0.8721 -11.1020 0.5214 42 1 2.2545 -9.9803 0.3317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691564301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:40 Heat of formation + Delta-G solvation = -206.480239 kcal Electronic energy + Delta-G solvation = -25271.533837 eV Core-core repulsion = 21443.086208 eV Total energy + Delta-G solvation = -3828.447630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41442 -40.62924 -39.84263 -37.30343 -37.03661 -35.84988 -35.19666 -33.08846 -32.19916 -30.34737 -29.40258 -26.73515 -25.50325 -24.51896 -23.81088 -21.80649 -21.43498 -20.98413 -19.57676 -18.55697 -18.40541 -18.21813 -17.78751 -17.04543 -16.98996 -16.45795 -16.30307 -16.19275 -15.85173 -15.56412 -15.21146 -14.52653 -14.47220 -14.25409 -14.06335 -13.75588 -13.60185 -13.12079 -13.08304 -12.87995 -12.80884 -12.65152 -12.46927 -12.33826 -12.25356 -12.14131 -11.94744 -11.42418 -11.33387 -11.19539 -11.06296 -10.88950 -10.50617 -10.30021 -9.63099 -8.16081 -6.26234 0.84402 1.42438 1.43646 1.50636 1.54844 1.87012 1.96596 2.44456 2.79698 2.99455 3.17207 3.46326 3.55993 3.79728 3.93107 3.97577 4.06172 4.08356 4.22060 4.26643 4.49522 4.56923 4.68344 4.72897 4.75674 4.78657 4.96810 5.16054 5.18994 5.31438 5.37194 5.40550 5.52723 5.63138 5.87300 5.96201 6.09009 6.32444 6.38367 6.54758 6.80205 6.92022 7.13095 7.42891 8.95617 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.002981 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.999063 B = 9389.553339 C = 9570.575024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.085 4.085 11 C -0.092 4.092 12 C 0.090 3.910 13 H 0.122 0.878 14 N -0.818 5.818 15 C 0.487 3.513 16 O -0.533 6.533 17 N -0.706 5.706 18 C 0.151 3.849 19 C 0.483 3.517 20 O -0.537 6.537 21 O -0.485 6.485 22 C -0.148 4.148 23 C 0.043 3.957 24 O -0.376 6.376 25 C 0.060 3.940 26 H 0.262 0.738 27 H -0.009 1.009 28 H -0.017 1.017 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.350 0.650 34 H 0.347 0.653 35 H 0.422 0.578 36 H 0.415 0.585 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -22.751 6.281 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.122 4.122 11 C -0.130 4.130 12 C -0.025 4.025 13 H 0.140 0.860 14 N -0.347 5.347 15 C 0.272 3.728 16 O -0.409 6.409 17 N -0.363 5.363 18 C 0.061 3.939 19 C 0.324 3.676 20 O -0.427 6.427 21 O -0.296 6.296 22 C -0.186 4.186 23 C -0.033 4.033 24 O -0.295 6.295 25 C -0.018 4.018 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.002 0.998 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.261 0.739 36 H 0.275 0.725 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.974 -22.586 6.110 23.586 hybrid contribution -1.338 0.343 -0.482 1.463 sum 1.637 -22.243 5.627 23.002 Atomic orbital electron populations 1.70104 1.07799 1.27583 1.52148 1.25982 0.95741 1.03335 0.94955 0.85483 0.78805 0.78600 0.78384 1.20055 1.20866 1.18513 1.21760 0.93604 0.92512 1.49832 0.92167 1.19052 0.94585 0.93516 0.94380 1.21288 0.97508 0.92195 1.01232 1.21422 0.96668 0.93244 1.01655 1.21588 0.95292 0.89453 0.96203 0.86032 1.59026 1.17558 1.54973 1.03146 1.22450 0.78810 0.88793 0.82762 1.90689 1.55508 1.57696 1.37016 1.46146 1.57309 1.21561 1.11293 1.21538 0.87745 0.88251 0.96372 1.23696 0.89318 0.74295 0.80258 1.90706 1.35565 1.44041 1.72371 1.84911 1.44627 1.67532 1.32484 1.23378 1.04308 1.01001 0.89866 1.23702 0.88615 0.95710 0.95294 1.89259 1.34078 1.86183 1.19944 1.23606 0.97153 0.92718 0.88313 0.92940 0.99028 0.99820 0.92543 0.92622 0.91202 0.93470 0.83679 0.83955 0.73933 0.72475 0.86125 0.87786 0.85339 0.90927 0.91144 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.08 -3.30 5.04 30.59 0.15 -3.15 16 11 C -0.09 -2.79 4.84 30.59 0.15 -2.64 16 12 C 0.09 2.09 3.15 44.17 0.14 2.23 16 13 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 14 N -0.82 -19.58 8.44 -171.80 -1.45 -21.03 16 15 C 0.49 10.87 5.83 87.66 0.51 11.38 16 16 O -0.53 -14.32 12.16 20.37 0.25 -14.07 16 17 N -0.71 -12.35 5.15 -421.69 -2.17 -14.53 16 18 C 0.15 2.74 0.99 3.87 0.00 2.75 16 19 C 0.48 10.98 7.05 71.23 0.50 11.49 16 20 O -0.54 -13.99 16.34 21.96 0.36 -13.64 16 21 O -0.49 -11.13 9.65 -43.73 -0.42 -11.55 16 22 C -0.15 -1.87 6.40 31.61 0.20 -1.67 16 23 C 0.04 0.50 7.63 72.49 0.55 1.06 16 24 O -0.38 -6.76 11.66 -148.98 -1.74 -8.49 16 25 C 0.06 1.15 6.49 72.49 0.47 1.62 16 26 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 27 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.06 2.28 7.75 -2.38 -0.02 2.26 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.35 6.99 9.06 -89.69 -0.81 6.18 16 34 H 0.35 8.91 8.58 -89.70 -0.77 8.14 16 35 H 0.42 5.32 8.14 -92.71 -0.75 4.57 16 36 H 0.41 6.57 9.10 -74.06 -0.67 5.90 16 37 H 0.12 0.96 7.53 -2.39 -0.02 0.95 16 38 H 0.10 1.48 6.77 -2.39 -0.02 1.47 16 39 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.34 7.86 -2.39 -0.02 1.32 16 42 H 0.10 2.19 6.64 -2.39 -0.02 2.18 16 Total: -1.00 -74.26 347.14 -1.26 -75.53 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -1.93 Total: 24.20 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 3.53 Total: -5.83 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.34 Total: -92.53 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -1.55 Total: -47.75 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -74.26 -1.26 -75.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691564301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.954 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds