Wall clock time and date at job start Tue Mar 31 2020 04:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99995 * 2 1 4 4 C 1.52999 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.46582 * 299.98054 * 4 3 2 6 6 O 1.20824 * 119.99760 * 25.02201 * 5 4 3 7 7 O 1.34233 * 120.00239 * 205.02224 * 5 4 3 8 8 C 1.53039 * 109.46108 * 59.95219 * 4 3 2 9 9 C 1.53126 * 109.28009 * 60.83157 * 8 4 3 10 10 C 1.53099 * 109.15071 * 57.65227 * 9 8 4 11 11 C 1.53034 * 109.29509 * 302.33888 * 10 9 8 12 12 N 1.46847 * 109.51345 * 59.18740 * 11 10 9 13 13 C 1.46898 * 110.99897 * 174.16738 * 12 11 10 14 14 C 1.50700 * 109.47111 * 293.95217 * 13 12 11 15 15 O 1.21292 * 119.99952 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99634 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99732 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99698 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99736 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00411 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99392 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47620 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46795 * 120.00507 * 21 19 17 24 24 H 1.48501 * 109.47298 * 240.00137 * 21 19 17 25 25 H 1.09000 * 109.46477 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47052 * 299.99188 * 1 2 3 27 27 H 1.08993 * 109.47270 * 60.00012 * 1 2 3 28 28 H 1.09005 * 109.46216 * 60.00221 * 3 2 1 29 29 H 1.08998 * 109.46844 * 300.00607 * 3 2 1 30 30 H 0.96696 * 117.00173 * 180.02562 * 7 5 4 31 31 H 1.08994 * 109.50227 * 180.76982 * 8 4 3 32 32 H 1.08998 * 109.50241 * 300.85037 * 8 4 3 33 33 H 1.08990 * 109.52264 * 177.55890 * 9 8 4 34 34 H 1.09002 * 109.52383 * 297.68676 * 9 8 4 35 35 H 1.09007 * 109.48839 * 182.39531 * 10 9 8 36 36 H 1.09009 * 109.50682 * 62.29317 * 10 9 8 37 37 H 1.09002 * 109.46271 * 299.17460 * 11 10 9 38 38 H 1.08994 * 109.46242 * 179.19760 * 11 10 9 39 39 H 1.09000 * 109.47095 * 53.95538 * 13 12 11 40 40 H 1.09006 * 109.47048 * 173.94984 * 13 12 11 41 41 H 0.96993 * 120.00518 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00109 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9805 0.4371 1.2297 6 8 3.2250 -0.3316 1.7758 7 8 5.2162 0.6251 1.7191 8 6 3.9862 0.4244 -1.2500 9 6 3.5496 1.1978 -2.4974 10 6 4.1453 2.6073 -2.4487 11 6 3.6900 3.3045 -1.1647 12 7 4.1325 2.5264 -0.0006 13 6 3.8339 3.2355 1.2508 14 6 4.6606 4.4933 1.3251 15 8 5.4238 4.7714 0.4243 16 7 4.5526 5.3085 2.3929 17 6 5.3051 6.4526 2.4607 18 1 5.9841 6.7007 1.6583 19 6 5.1934 7.2933 3.5613 20 7 4.3669 6.9917 4.5374 21 14 6.2181 8.8524 3.6533 22 1 7.0626 8.9624 2.4368 23 1 5.3191 10.0313 3.7394 24 1 7.0869 8.8036 4.8567 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 5.4564 0.1231 2.5098 31 1 5.0716 0.3261 -1.2443 32 1 3.5310 -0.5659 -1.2573 33 1 3.9062 0.6821 -3.3890 34 1 2.4618 1.2617 -2.5242 35 1 3.8034 3.1767 -3.3130 36 1 5.2334 2.5432 -2.4618 37 1 2.6027 3.3806 -1.1588 38 1 4.1242 4.3033 -1.1203 39 1 2.7754 3.4942 1.2782 40 1 4.0729 2.5930 2.0983 41 1 3.9431 5.0855 3.1137 42 1 4.2892 7.5785 5.3058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692376695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:38 Heat of formation + Delta-G solvation = -155.998514 kcal Electronic energy + Delta-G solvation = -26399.535035 eV Core-core repulsion = 22573.276457 eV Total energy + Delta-G solvation = -3826.258578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10956 -38.96494 -38.02402 -37.06625 -35.84626 -34.07577 -33.34496 -31.62865 -31.23463 -28.07215 -27.20711 -25.49064 -24.74792 -24.35318 -22.98429 -20.99639 -19.31821 -18.92602 -18.03360 -17.81623 -17.08690 -16.58508 -15.84690 -15.56349 -15.44640 -15.39330 -14.84614 -14.51185 -14.17196 -13.95838 -13.88160 -13.69112 -13.08933 -12.94825 -12.90645 -12.76436 -12.25942 -12.00890 -11.67121 -11.55352 -11.43838 -11.31554 -11.14721 -11.03120 -10.92233 -10.58400 -10.37634 -10.33299 -10.23478 -10.10102 -9.61210 -9.47569 -8.53303 -8.03340 -7.93713 -6.43067 -3.83984 2.29048 3.09126 3.15477 3.26295 3.33042 3.53932 3.80184 3.87382 4.19168 4.52443 4.74514 4.93708 4.99669 5.09095 5.10635 5.15960 5.22569 5.25209 5.27892 5.40115 5.45843 5.54994 5.56562 5.63723 5.75796 5.78496 5.93403 5.95773 6.01500 6.12738 6.21996 6.40985 6.46904 6.63746 6.97490 7.11124 7.18744 7.54241 8.04212 8.11091 8.59271 9.16352 9.51938 10.03067 10.74734 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.004203 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.671058 B = 6660.088763 C = 7064.177594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.039 3.961 4 C 0.129 3.871 5 C 0.490 3.510 6 O -0.499 6.499 7 O -0.495 6.495 8 C -0.099 4.099 9 C -0.118 4.118 10 C -0.116 4.116 11 C 0.045 3.955 12 N -0.481 5.481 13 C 0.036 3.964 14 C 0.450 3.550 15 O -0.573 6.573 16 N -0.563 5.563 17 C -0.297 4.297 18 H 0.105 0.895 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.403 0.597 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.391 0.609 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -12.617 -9.275 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.040 4.040 4 C 0.037 3.963 5 C 0.331 3.669 6 O -0.385 6.385 7 O -0.305 6.305 8 C -0.136 4.136 9 C -0.156 4.156 10 C -0.154 4.154 11 C -0.082 4.082 12 N -0.207 5.207 13 C -0.095 4.095 14 C 0.235 3.765 15 O -0.457 6.457 16 N -0.200 5.200 17 C -0.427 4.427 18 H 0.123 0.877 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.224 0.776 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.345 -12.537 -9.934 16.865 hybrid contribution -0.957 0.654 1.418 1.831 sum -6.302 -11.883 -8.517 15.920 Atomic orbital electron populations 1.22717 0.81482 1.02600 0.99688 1.87996 1.19116 1.25979 1.95251 1.23163 0.92974 0.86534 1.01300 1.20949 0.91079 0.91584 0.92688 1.23012 0.79406 0.80017 0.84485 1.90743 1.54431 1.35022 1.58342 1.84744 1.33129 1.66136 1.46494 1.21535 1.02464 0.98319 0.91330 1.21611 1.00463 0.96391 0.97116 1.21601 1.02290 0.94875 0.96600 1.22436 0.97014 0.99905 0.88828 1.61939 1.56507 0.99689 1.02525 1.22037 0.98114 0.96775 0.92536 1.19467 0.87008 0.85261 0.84797 1.90491 1.41058 1.75089 1.39044 1.41854 1.38772 1.20787 1.18560 1.19751 1.19803 0.97649 1.05495 0.87746 1.25262 0.97583 0.99783 0.95293 1.69619 1.36788 1.38841 1.09043 0.85801 0.79337 0.80793 0.78422 1.19176 1.20808 1.20745 0.89656 0.94190 0.94427 0.92892 0.91170 0.73931 0.89963 0.90224 0.91238 0.92088 0.91429 0.90372 0.95428 0.86950 0.93333 0.89342 0.77563 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.00 8.45 -56.38 -0.48 -5.48 16 3 C 0.04 0.53 3.59 37.16 0.13 0.66 16 4 C 0.13 1.87 0.48 -132.76 -0.06 1.80 16 5 C 0.49 7.58 5.68 36.00 0.20 7.78 16 6 O -0.50 -8.57 15.83 -25.82 -0.41 -8.98 16 7 O -0.50 -7.06 12.14 -39.27 -0.48 -7.54 16 8 C -0.10 -1.23 4.74 -26.65 -0.13 -1.36 16 9 C -0.12 -1.28 5.69 -26.62 -0.15 -1.43 16 10 C -0.12 -1.44 6.09 -26.66 -0.16 -1.60 16 11 C 0.04 0.69 4.81 -3.84 -0.02 0.67 16 12 N -0.48 -7.95 3.97 -221.78 -0.88 -8.83 16 13 C 0.04 0.66 4.58 -4.98 -0.02 0.64 16 14 C 0.45 10.43 7.46 -10.98 -0.08 10.35 16 15 O -0.57 -14.90 13.92 5.55 0.08 -14.82 16 16 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 17 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.75 6.78 -51.93 -0.35 0.40 16 29 H 0.07 0.85 4.80 -51.93 -0.25 0.60 16 30 H 0.40 3.87 9.10 45.56 0.41 4.28 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.97 7.66 -51.93 -0.40 0.57 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 37 H 0.03 0.38 6.19 -51.93 -0.32 0.06 16 38 H 0.11 2.10 5.80 -51.93 -0.30 1.79 16 39 H 0.05 0.81 6.96 -51.93 -0.36 0.45 16 40 H 0.09 1.58 5.93 -51.93 -0.31 1.27 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -32.73 332.98 -5.93 -38.66 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -5.01 Total: 12.85 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 0.58 Total: 11.14 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.21 Total: -46.66 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.28 Total: -36.81 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.73 -5.93 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692376695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.339 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds