Wall clock time and date at job start Tue Mar 31 2020 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00142 * 2 1 4 4 C 1.53001 * 109.47138 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46452 * 60.01889 * 4 3 2 6 6 O 1.20822 * 119.99673 * 250.94230 * 5 4 3 7 7 O 1.34229 * 119.99813 * 70.94403 * 5 4 3 8 8 C 1.53034 * 109.46224 * 300.04998 * 4 3 2 9 9 C 1.53125 * 109.27850 * 299.16452 * 8 4 3 10 10 C 1.53116 * 109.15799 * 302.34596 * 9 8 4 11 11 C 1.53039 * 109.28145 * 57.65542 * 10 9 8 12 12 N 1.46846 * 109.52185 * 300.81596 * 11 10 9 13 13 C 1.46896 * 111.00239 * 185.83633 * 12 11 10 14 14 C 1.50708 * 109.46678 * 52.80504 * 13 12 11 15 15 O 1.21289 * 120.00113 * 8.12532 * 14 13 12 16 16 N 1.34776 * 119.99657 * 188.12422 * 14 13 12 17 17 C 1.37105 * 119.99782 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00060 * 359.97438 * 17 16 14 19 19 C 1.38940 * 119.99912 * 180.02562 * 17 16 14 20 20 N 1.31418 * 120.00230 * 359.71990 * 19 17 16 21 21 Si 1.86801 * 119.99995 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46834 * 269.72233 * 21 19 17 23 23 H 1.48498 * 109.47198 * 29.71765 * 21 19 17 24 24 H 1.48500 * 109.47437 * 149.72103 * 21 19 17 25 25 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47165 * 300.00442 * 1 2 3 27 27 H 1.08999 * 109.46895 * 59.99965 * 1 2 3 28 28 H 1.08998 * 109.47606 * 59.99373 * 3 2 1 29 29 H 1.09000 * 109.47079 * 299.99360 * 3 2 1 30 30 H 0.96702 * 116.99580 * 179.97438 * 7 5 4 31 31 H 1.09004 * 109.50257 * 59.10260 * 8 4 3 32 32 H 1.09003 * 109.50401 * 179.18781 * 8 4 3 33 33 H 1.09001 * 109.52187 * 62.25169 * 9 8 4 34 34 H 1.09002 * 109.52426 * 182.37518 * 9 8 4 35 35 H 1.09007 * 109.50356 * 177.59719 * 10 9 8 36 36 H 1.09000 * 109.50459 * 297.70666 * 10 9 8 37 37 H 1.09002 * 109.46227 * 180.80670 * 11 10 9 38 38 H 1.08991 * 109.46216 * 60.83604 * 11 10 9 39 39 H 1.09001 * 109.47180 * 292.80838 * 13 12 11 40 40 H 1.08999 * 109.47297 * 172.80228 * 13 12 11 41 41 H 0.97003 * 120.00540 * 0.02562 * 16 14 13 42 42 H 0.96999 * 119.99728 * 0.28636 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9795 0.4373 -1.2317 6 8 4.4157 -0.6851 -1.1326 7 8 3.8904 1.0187 -2.4383 8 6 3.9872 0.4238 1.2480 9 6 3.5517 1.1967 2.4961 10 6 4.1475 2.6063 2.4475 11 6 3.6911 3.3039 1.1641 12 7 4.1326 2.5262 -0.0007 13 6 3.8330 3.2356 -1.2517 14 6 4.3979 4.6312 -1.1853 15 8 5.1155 4.9517 -0.2614 16 7 4.1057 5.5231 -2.1525 17 6 4.6192 6.7930 -2.0919 18 1 5.2575 7.0786 -1.2689 19 6 4.3176 7.7126 -3.0888 20 7 3.5446 7.3637 -4.0927 21 14 5.0178 9.4425 -3.0066 22 1 4.0789 10.3217 -2.2644 23 1 6.3271 9.4138 -2.3065 24 1 5.2040 9.9671 -4.3832 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 4.1878 0.5001 -3.1984 31 1 3.5313 -0.5664 1.2556 32 1 5.0727 0.3247 1.2410 33 1 2.4640 1.2616 2.5232 34 1 3.9081 0.6800 3.3873 35 1 3.8063 3.1756 3.3122 36 1 5.2356 2.5422 2.4597 37 1 4.1253 4.3027 1.1195 38 1 2.6039 3.3801 1.1591 39 1 2.7531 3.2870 -1.3906 40 1 4.2820 2.7013 -2.0889 41 1 3.5316 5.2670 -2.8912 42 1 3.1813 6.4653 -4.1355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692376697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:40 Heat of formation + Delta-G solvation = -146.892134 kcal Electronic energy + Delta-G solvation = -26496.700008 eV Core-core repulsion = 22670.836312 eV Total energy + Delta-G solvation = -3825.863696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24325 -39.12108 -38.24233 -37.18238 -36.23925 -34.44765 -33.32342 -31.59128 -31.13465 -28.09237 -27.21838 -25.62028 -24.58529 -24.34663 -22.93728 -21.26208 -19.77313 -18.78176 -18.21794 -17.94103 -17.13850 -16.75014 -16.50139 -15.95596 -15.71319 -15.10635 -14.70309 -14.64702 -14.41191 -14.05008 -13.92094 -13.76125 -13.24953 -13.09599 -13.00083 -12.91161 -12.35080 -12.04487 -11.86456 -11.58173 -11.32345 -11.24732 -11.12306 -10.94150 -10.66944 -10.50838 -10.40095 -10.33510 -10.23983 -9.88485 -9.78853 -9.46027 -8.45673 -8.15000 -7.98159 -6.79284 -3.92688 2.18338 2.94322 3.27551 3.33018 3.36562 3.52321 3.76709 3.93129 4.26140 4.44932 4.63383 4.82270 4.94997 5.02768 5.07877 5.09080 5.15532 5.18964 5.21702 5.37851 5.38558 5.42267 5.58286 5.65754 5.76809 5.86793 5.97430 6.01760 6.07820 6.19669 6.26958 6.46028 6.48364 6.55510 6.80036 7.08861 7.17183 7.76931 7.90741 8.04618 8.55299 8.75197 9.42918 9.82445 10.63959 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.004262 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.000432 B = 6568.204034 C = 6958.312396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.029 3.971 4 C 0.129 3.871 5 C 0.504 3.496 6 O -0.505 6.505 7 O -0.505 6.505 8 C -0.090 4.090 9 C -0.121 4.121 10 C -0.116 4.116 11 C 0.028 3.972 12 N -0.488 5.488 13 C 0.021 3.979 14 C 0.444 3.556 15 O -0.571 6.571 16 N -0.571 5.571 17 C -0.382 4.382 18 H 0.100 0.900 19 C -0.008 4.008 20 N -0.900 5.900 21 Si 1.093 2.907 22 H -0.285 1.285 23 H -0.283 1.283 24 H -0.281 1.281 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.402 0.598 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.025 0.975 39 H 0.047 0.953 40 H 0.127 0.873 41 H 0.376 0.624 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -13.049 7.193 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.049 4.049 4 C 0.038 3.962 5 C 0.345 3.655 6 O -0.391 6.391 7 O -0.318 6.318 8 C -0.128 4.128 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.098 4.098 12 N -0.215 5.215 13 C -0.109 4.109 14 C 0.230 3.770 15 O -0.456 6.456 16 N -0.208 5.208 17 C -0.512 4.512 18 H 0.118 0.882 19 C -0.211 4.211 20 N -0.539 5.539 21 Si 0.919 3.081 22 H -0.211 1.211 23 H -0.209 1.209 24 H -0.206 1.206 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.261 0.739 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.151 0.849 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.144 0.856 41 H 0.209 0.791 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.837 -11.658 7.408 14.635 hybrid contribution -1.453 -1.727 -0.365 2.287 sum -6.290 -13.385 7.043 16.381 Atomic orbital electron populations 1.22771 0.80804 1.02843 1.00172 1.87914 1.19905 1.26810 1.95464 1.23354 0.93312 0.86102 1.02180 1.20996 0.91452 0.91944 0.91853 1.23000 0.73630 0.84670 0.84218 1.90672 1.41809 1.19751 1.86830 1.84770 1.79605 1.49468 1.17945 1.21442 1.02470 0.98255 0.90593 1.21672 1.00357 0.96454 0.97378 1.21612 1.02059 0.94872 0.96828 1.22829 0.97266 1.01418 0.88270 1.62099 1.56391 0.99785 1.03192 1.22556 0.99423 0.95230 0.93680 1.19609 0.86390 0.85915 0.85088 1.90402 1.40990 1.79425 1.34803 1.41942 1.44819 1.11670 1.22357 1.20579 1.30891 0.87552 1.12145 0.88163 1.26512 0.96785 1.05724 0.92058 1.70876 1.31085 1.21264 1.30637 0.83096 0.75937 0.72668 0.76370 1.21130 1.20871 1.20638 0.89433 0.93925 0.93957 0.90806 0.92041 0.73861 0.89848 0.90284 0.92253 0.91264 0.91461 0.90642 0.84921 0.95660 0.93485 0.85619 0.79083 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.87 9.63 -35.23 -0.34 -5.21 16 3 C 0.03 0.38 3.78 37.16 0.14 0.52 16 4 C 0.13 1.88 0.49 -132.76 -0.07 1.82 16 5 C 0.50 7.62 6.73 36.01 0.24 7.87 16 6 O -0.50 -8.57 16.75 -18.75 -0.31 -8.88 16 7 O -0.51 -6.42 9.59 -39.26 -0.38 -6.79 16 8 C -0.09 -1.21 4.10 -26.65 -0.11 -1.32 16 9 C -0.12 -1.41 5.70 -26.61 -0.15 -1.56 16 10 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 11 C 0.03 0.46 4.70 -3.83 -0.02 0.44 16 12 N -0.49 -8.14 4.35 -221.77 -0.97 -9.10 16 13 C 0.02 0.38 4.53 -4.97 -0.02 0.35 16 14 C 0.44 10.15 7.29 -10.98 -0.08 10.07 16 15 O -0.57 -14.76 13.27 5.55 0.07 -14.69 16 16 N -0.57 -13.96 5.28 -10.96 -0.06 -14.02 16 17 C -0.38 -10.45 9.68 -14.93 -0.14 -10.60 16 18 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 19 C -0.01 -0.21 5.50 -17.47 -0.10 -0.31 16 20 N -0.90 -24.71 13.68 55.50 0.76 -23.95 16 21 Si 1.09 23.82 29.92 -169.99 -5.09 18.73 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.90 4.80 -51.93 -0.25 0.65 16 29 H 0.06 0.81 6.48 -51.93 -0.34 0.47 16 30 H 0.40 3.32 9.10 53.03 0.48 3.80 16 31 H 0.08 1.13 7.52 -51.93 -0.39 0.74 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.13 2.65 4.91 -51.93 -0.25 2.39 16 38 H 0.03 0.38 6.19 -51.93 -0.32 0.06 16 39 H 0.05 0.77 6.33 -51.93 -0.33 0.44 16 40 H 0.13 2.15 4.93 -44.96 -0.22 1.92 16 41 H 0.38 8.56 6.73 -40.82 -0.27 8.29 16 42 H 0.26 6.91 6.77 -40.82 -0.28 6.63 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -33.11 327.89 -5.36 -38.47 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -4.64 Total: 13.53 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 0.65 Total: 6.97 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.26 Total: -47.07 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.96 Total: -35.57 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.11 -5.36 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692376697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.425 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds