Wall clock time and date at job start Tue Mar 31 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.50702 * 109.47250 * 239.99923 * 2 1 3 5 5 O 1.21285 * 119.99981 * 244.94615 * 4 2 1 6 6 N 1.34779 * 119.99963 * 64.93844 * 4 2 1 7 7 C 1.46494 * 120.00010 * 5.35504 * 6 4 2 8 8 C 1.46498 * 119.99730 * 185.35663 * 6 4 2 9 9 C 1.50694 * 109.47313 * 90.00297 * 8 6 4 10 10 H 1.08003 * 120.00048 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00541 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00502 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99536 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47233 * 90.00013 * 13 11 9 15 15 H 1.48504 * 109.47176 * 209.99572 * 13 11 9 16 16 H 1.48498 * 109.47326 * 330.00159 * 13 11 9 17 17 N 1.46905 * 109.46989 * 119.99912 * 2 1 3 18 18 C 1.47008 * 110.99827 * 58.95348 * 17 2 1 19 19 C 1.53102 * 109.25633 * 177.60734 * 18 17 2 20 20 O 1.43011 * 109.25705 * 56.84747 * 19 18 17 21 21 C 1.43015 * 113.74122 * 301.32833 * 20 19 18 22 22 H 1.09007 * 109.50785 * 298.69627 * 21 20 19 23 23 C 1.50703 * 109.50905 * 178.60503 * 21 20 19 24 24 O 1.20816 * 119.99923 * 355.36551 * 23 21 20 25 25 O 1.34227 * 119.99904 * 175.08454 * 23 21 20 26 26 C 1.47022 * 110.99776 * 295.26992 * 17 2 1 27 27 H 1.09000 * 109.47171 * 70.78010 * 1 2 3 28 28 H 1.08998 * 109.47320 * 190.78786 * 1 2 3 29 29 H 1.09001 * 109.46905 * 310.78359 * 1 2 3 30 30 H 1.08999 * 109.47152 * 96.00079 * 7 6 4 31 31 H 1.08994 * 109.47420 * 215.99862 * 7 6 4 32 32 H 1.09000 * 109.47458 * 336.00338 * 7 6 4 33 33 H 1.09005 * 109.46759 * 210.00150 * 8 6 4 34 34 H 1.08997 * 109.47540 * 329.99914 * 8 6 4 35 35 H 0.97001 * 120.00383 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.50945 * 57.67371 * 18 17 2 37 37 H 1.08998 * 109.54452 * 297.56065 * 18 17 2 38 38 H 1.08998 * 109.50503 * 296.91110 * 19 18 17 39 39 H 1.09000 * 109.50626 * 176.78254 * 19 18 17 40 40 H 0.96702 * 116.99918 * 180.02562 * 25 23 21 41 41 H 1.09000 * 109.46788 * 62.43552 * 26 17 2 42 42 H 1.08998 * 109.54525 * 302.30827 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6538 -1.7462 -1.1214 6 7 1.7908 -0.1948 -2.4521 7 6 1.1438 1.1132 -2.5802 8 6 2.1754 -0.9426 -3.6517 9 6 1.0343 -1.8299 -4.0779 10 1 0.1148 -1.8366 -3.5114 11 6 1.1641 -2.6333 -5.1908 12 7 0.1685 -3.4081 -5.5624 13 14 2.7543 -2.6213 -6.1709 14 1 3.6784 -3.6491 -5.6278 15 1 2.4603 -2.9230 -7.5950 16 1 3.3884 -1.2824 -6.0692 17 7 2.0196 -0.6925 1.1995 18 6 1.5279 -2.0771 1.2460 19 6 2.1087 -2.7781 2.4770 20 8 1.7578 -2.0392 3.6500 21 6 2.2216 -0.6864 3.6385 22 1 3.3103 -0.6752 3.5853 23 6 1.7721 0.0105 4.8969 24 8 1.0517 -0.5619 5.6800 25 8 2.1766 1.2650 5.1505 26 6 1.6428 0.0365 2.4194 27 1 -0.3633 0.3383 -0.9704 28 1 -0.3634 -1.0095 0.1923 29 1 -0.3633 0.6713 0.7781 30 1 1.9041 1.8836 -2.7085 31 1 0.4822 1.1080 -3.4464 32 1 0.5638 1.3214 -1.6812 33 1 2.4121 -0.2444 -4.4547 34 1 3.0500 -1.5552 -3.4333 35 1 0.2600 -3.9736 -6.3451 36 1 1.8407 -2.6050 0.3452 37 1 0.4396 -2.0757 1.3077 38 1 3.1940 -2.8279 2.3892 39 1 1.7020 -3.7870 2.5471 40 1 1.8626 1.6702 5.9704 41 1 0.5564 0.0731 2.4997 42 1 2.0395 1.0507 2.3753 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736199190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:36 Heat of formation + Delta-G solvation = -160.514191 kcal Electronic energy + Delta-G solvation = -25762.881557 eV Core-core repulsion = 21936.427165 eV Total energy + Delta-G solvation = -3826.454392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91907 -41.14371 -39.82815 -37.41374 -36.96422 -36.60018 -34.73554 -32.82258 -32.33260 -30.13036 -28.32227 -27.48166 -26.16471 -25.32065 -24.00021 -22.68373 -21.31273 -20.01616 -19.20442 -19.13015 -18.27171 -18.00401 -17.30754 -17.19301 -16.93153 -16.43767 -16.32450 -16.11499 -15.99620 -15.50945 -15.20613 -14.75067 -14.71886 -14.33193 -14.19369 -13.72793 -13.64397 -13.56109 -13.41719 -13.10777 -13.00823 -12.63179 -12.58036 -12.43868 -12.25719 -12.20941 -11.97118 -11.82700 -11.73030 -11.43594 -10.99473 -10.82542 -10.32080 -9.45468 -9.32354 -8.33589 -6.38553 1.02799 1.33982 1.37698 1.45956 1.53313 1.78187 2.15538 2.31565 2.70313 3.01315 3.10153 3.55948 3.58658 3.87336 3.91959 4.00272 4.07582 4.13190 4.18256 4.34780 4.37683 4.54216 4.58550 4.63023 4.67212 4.72417 4.82510 4.84254 4.93938 4.97123 4.99608 5.20845 5.46691 5.50680 5.62960 5.72524 5.81405 5.95991 6.24940 6.63148 6.72957 6.93311 7.22673 7.44733 8.83039 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.003535 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.454240 B = 7919.180043 C = 8290.732768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.077 3.923 3 H 0.144 0.856 4 C 0.505 3.495 5 O -0.573 6.573 6 N -0.605 5.605 7 C 0.062 3.938 8 C 0.224 3.776 9 C -0.534 4.534 10 H 0.030 0.970 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.277 1.277 15 H -0.277 1.277 16 H -0.238 1.238 17 N -0.517 5.517 18 C -0.002 4.002 19 C 0.076 3.924 20 O -0.383 6.383 21 C 0.099 3.901 22 H 0.122 0.878 23 C 0.501 3.499 24 O -0.536 6.536 25 O -0.495 6.495 26 C 0.034 3.966 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.436 0.564 41 H 0.052 0.948 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 14.872 17.432 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 H 0.161 0.839 4 C 0.293 3.707 5 O -0.453 6.453 6 N -0.336 5.336 7 C -0.079 4.079 8 C 0.102 3.898 9 C -0.573 4.573 10 H 0.048 0.952 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.770 3.230 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.161 1.161 17 N -0.242 5.242 18 C -0.130 4.130 19 C 0.000 4.000 20 O -0.303 6.303 21 C 0.040 3.960 22 H 0.139 0.861 23 C 0.343 3.657 24 O -0.425 6.425 25 O -0.310 6.310 26 C -0.094 4.094 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.299 0.701 41 H 0.070 0.930 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.238 13.825 17.330 22.780 hybrid contribution -0.860 -0.532 -0.497 1.127 sum 4.378 13.293 16.833 21.891 Atomic orbital electron populations 1.22604 0.94305 1.02986 1.04890 1.21647 0.94830 0.99636 0.87332 0.83891 1.20990 0.79396 0.85095 0.85196 1.90533 1.42385 1.25905 1.86435 1.47855 1.59380 1.20785 1.05590 1.22278 0.98539 0.82719 1.04404 1.19304 0.94693 0.91877 0.83940 1.21557 1.00483 1.23983 1.11261 0.95155 1.25825 1.00214 0.94210 0.98400 1.70045 1.34095 1.27330 1.27087 0.85731 0.79217 0.80394 0.77697 1.20246 1.20262 1.16098 1.62112 1.59165 1.01876 1.01005 1.23145 0.97782 0.90683 1.01362 1.22777 1.00568 0.95008 0.81629 1.88004 1.78902 1.21861 1.41508 1.21502 1.01311 0.83324 0.89898 0.86062 1.22670 0.76280 0.80259 0.86539 1.90746 1.35761 1.66844 1.49111 1.84433 1.70457 1.27339 1.48725 1.22732 0.99712 0.99463 0.87506 0.90008 0.93663 0.88325 0.90245 0.91868 0.87929 0.93377 0.96192 0.92327 0.88711 0.94373 0.91183 0.86709 0.70098 0.93012 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.42 7.93 71.98 0.57 -3.85 16 2 C 0.08 1.96 1.94 44.17 0.09 2.05 16 3 H 0.14 2.58 7.73 -2.39 -0.02 2.56 16 4 C 0.50 19.02 6.78 87.66 0.59 19.62 16 5 O -0.57 -26.69 13.25 -3.05 -0.04 -26.73 16 6 N -0.60 -22.99 2.85 -851.16 -2.43 -25.42 16 7 C 0.06 1.61 9.71 127.77 1.24 2.85 16 8 C 0.22 10.55 4.30 85.63 0.37 10.92 16 9 C -0.53 -30.59 9.94 25.60 0.25 -30.34 16 10 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 11 C 0.01 0.67 5.47 84.65 0.46 1.13 16 12 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 13 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 17 N -0.52 -13.25 4.54 -874.37 -3.97 -17.22 16 18 C 0.00 -0.06 4.79 86.32 0.41 0.36 16 19 C 0.08 1.96 7.01 72.02 0.50 2.46 16 20 O -0.38 -10.19 10.01 -129.97 -1.30 -11.49 16 21 C 0.10 2.01 3.33 29.88 0.10 2.11 16 22 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 23 C 0.50 9.65 7.66 71.24 0.55 10.19 16 24 O -0.54 -14.75 17.26 28.41 0.49 -14.26 16 25 O -0.49 -5.23 13.42 -51.39 -0.69 -5.92 16 26 C 0.03 0.63 4.58 86.31 0.40 1.02 16 27 H 0.08 1.96 5.40 -2.39 -0.01 1.95 16 28 H 0.04 1.29 5.91 -2.39 -0.01 1.28 16 29 H 0.10 1.62 7.14 -2.39 -0.02 1.61 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 32 H 0.10 2.00 4.12 -2.39 -0.01 1.99 16 33 H 0.05 2.09 7.13 -2.38 -0.02 2.07 16 34 H 0.02 1.02 6.78 -2.39 -0.02 1.00 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.09 3.64 5.23 -2.39 -0.01 3.63 16 37 H 0.04 1.17 6.20 -2.39 -0.01 1.15 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.44 0.79 9.10 -74.06 -0.67 0.12 16 41 H 0.05 0.99 6.80 -2.39 -0.02 0.98 16 42 H 0.13 1.64 8.13 -2.39 -0.02 1.62 16 Total: -1.00 -82.30 333.66 0.11 -82.18 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.33 Total: 13.38 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.53 Total: 18.52 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -6.10 Total: -101.38 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -1.54 Total: -58.40 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -82.30 0.11 -82.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736199190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.330 kcal (2) G-P(sol) polarization free energy of solvation -82.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds