Wall clock time and date at job start Tue Mar 31 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99669 * 2 1 4 4 H 1.48494 * 109.47409 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47113 * 29.99948 * 3 2 1 6 6 H 1.48500 * 109.47165 * 149.99601 * 3 2 1 7 7 C 1.38946 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00206 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99449 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00056 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47100 * 182.96888 * 12 10 9 14 14 C 1.46900 * 111.00318 * 74.49124 * 13 12 10 15 15 C 1.53001 * 109.46664 * 66.10949 * 14 13 12 16 16 C 1.50699 * 109.46990 * 185.44273 * 15 14 13 17 17 O 1.20826 * 119.99995 * 0.02562 * 16 15 14 18 18 O 1.34229 * 119.99792 * 180.02562 * 16 15 14 19 19 C 1.46894 * 110.99759 * 198.45291 * 13 12 10 20 20 C 1.53009 * 109.46898 * 159.77667 * 19 13 12 21 21 H 1.09002 * 110.33025 * 308.85111 * 20 19 13 22 22 C 1.54480 * 110.37226 * 186.59840 * 20 19 13 23 23 C 1.54511 * 104.06061 * 217.19336 * 22 20 19 24 24 C 1.54470 * 104.06241 * 359.97438 * 23 22 20 25 25 O 1.44423 * 104.80888 * 23.98134 * 24 23 22 26 26 H 0.97000 * 119.99971 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99896 * 0.02562 * 9 7 2 28 28 H 1.08991 * 109.47683 * 62.96452 * 12 10 9 29 29 H 1.09007 * 109.47064 * 302.95763 * 12 10 9 30 30 H 1.08996 * 109.47195 * 306.11762 * 14 13 12 31 31 H 1.08991 * 109.46974 * 186.10700 * 14 13 12 32 32 H 1.08998 * 109.47500 * 305.44648 * 15 14 13 33 33 H 1.09002 * 109.47175 * 65.44840 * 15 14 13 34 34 H 0.96706 * 116.99831 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.46955 * 279.76906 * 19 13 12 36 36 H 1.08991 * 109.47557 * 39.78082 * 19 13 12 37 37 H 1.09001 * 110.50696 * 335.83617 * 22 20 19 38 38 H 1.08994 * 110.51308 * 98.40824 * 22 20 19 39 39 H 1.09004 * 110.51058 * 118.64989 * 23 22 20 40 40 H 1.09003 * 110.50594 * 241.21522 * 23 22 20 41 41 H 1.09009 * 110.37306 * 142.81596 * 24 23 22 42 42 H 1.09000 * 110.37439 * 265.14841 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1969 -5.9786 0.0707 14 6 2.7573 -6.1061 1.4227 15 6 1.6499 -6.5118 2.3974 16 6 2.1935 -6.5127 3.8030 17 8 3.3480 -6.2186 4.0044 18 8 1.3951 -6.8403 4.8311 19 6 1.5698 -7.2351 -0.3600 20 6 2.6558 -8.2376 -0.7559 21 1 3.3512 -7.7835 -1.4619 22 6 2.0200 -9.5057 -1.3675 23 6 2.9065 -10.6589 -0.8463 24 6 3.9734 -9.9510 0.0179 25 8 3.3598 -8.7054 0.4149 26 1 -0.4850 0.8401 -0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6581 -4.9439 -0.9166 29 1 0.5777 -4.8982 0.8610 30 1 3.1814 -5.1508 1.7318 31 1 3.5376 -6.8671 1.4222 32 1 0.8258 -5.8018 2.3270 33 1 1.2920 -7.5101 2.1457 34 1 1.7886 -6.8263 5.7143 35 1 0.9779 -7.6450 0.4584 36 1 0.9228 -7.0436 -1.2160 37 1 0.9942 -9.6249 -1.0185 38 1 2.0492 -9.4607 -2.4561 39 1 2.3190 -11.3482 -0.2398 40 1 3.3743 -11.1865 -1.6775 41 1 4.2120 -10.5530 0.8948 42 1 4.8721 -9.7611 -0.5689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:05 Heat of formation + Delta-G solvation = -165.497594 kcal Electronic energy + Delta-G solvation = -25293.013982 eV Core-core repulsion = 21466.343493 eV Total energy + Delta-G solvation = -3826.670489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.29709 -39.59151 -38.44162 -36.70471 -35.95240 -33.80435 -32.29601 -31.31338 -31.18415 -30.19010 -27.15195 -25.57661 -24.53190 -22.69979 -21.86265 -21.24776 -20.05684 -18.89137 -18.09265 -17.74891 -16.99746 -16.50885 -16.14743 -15.98564 -15.58483 -15.43466 -14.84431 -14.56998 -14.42983 -13.85696 -13.69564 -13.43221 -13.29046 -13.07578 -12.54835 -12.34584 -12.17781 -11.89299 -11.75264 -11.51255 -11.45351 -11.25026 -11.15808 -11.14308 -10.93275 -10.78332 -10.47557 -10.41111 -10.35135 -10.16262 -9.74042 -9.42868 -8.45347 -7.91411 -7.85125 -6.36737 -3.76964 2.33381 3.11164 3.21751 3.29911 3.36412 3.82761 3.93425 3.97113 4.26798 4.46059 4.65671 4.79825 4.97136 5.01590 5.04726 5.12332 5.19161 5.27444 5.32264 5.35414 5.41825 5.53456 5.56994 5.59407 5.64121 5.73807 5.77500 5.83804 5.95156 6.03997 6.20253 6.35831 6.53226 6.69947 6.84203 7.27980 7.34492 7.60500 7.98642 8.12206 8.68151 9.24355 9.60534 10.13319 10.81235 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.003842 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.077095 B = 7285.971261 C = 8343.805014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.444 3.556 11 O -0.571 6.571 12 C 0.037 3.963 13 N -0.503 5.503 14 C 0.070 3.930 15 C -0.155 4.155 16 C 0.484 3.516 17 O -0.508 6.508 18 O -0.524 6.524 19 C 0.051 3.949 20 C 0.081 3.919 21 H 0.081 0.919 22 C -0.150 4.150 23 C -0.154 4.154 24 C 0.043 3.957 25 O -0.365 6.365 26 H 0.270 0.730 27 H 0.391 0.609 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.406 0.594 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -20.468 1.247 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.229 3.771 11 O -0.454 6.454 12 C -0.094 4.094 13 N -0.225 5.225 14 C -0.058 4.058 15 C -0.194 4.194 16 C 0.326 3.674 17 O -0.395 6.395 18 O -0.335 6.335 19 C -0.077 4.077 20 C 0.023 3.977 21 H 0.099 0.901 22 C -0.189 4.189 23 C -0.192 4.192 24 C -0.034 4.034 25 O -0.284 6.284 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.447 -19.999 0.771 20.019 hybrid contribution -0.783 0.553 0.915 1.325 sum -1.229 -19.446 1.687 19.558 Atomic orbital electron populations 1.69611 1.05897 1.28017 1.51080 1.25229 0.95615 0.99620 0.97516 0.85879 0.79273 0.80928 0.78351 1.20449 1.21012 1.19431 1.19697 0.93366 0.82238 1.47252 0.87951 1.41862 1.09089 1.04570 1.65019 1.19750 0.88492 0.84456 0.84405 1.90541 1.13597 1.86875 1.54338 1.22030 0.93938 0.91727 1.01751 1.61796 1.34089 1.02040 1.24557 1.22229 0.94933 1.04761 0.83896 1.22200 1.03336 1.05178 0.88717 1.23410 0.84061 0.72258 0.87684 1.90741 1.19031 1.44065 1.85684 1.84552 1.47367 1.82068 1.19562 1.22372 0.94859 0.89881 1.00628 1.23082 0.93724 0.93174 0.87726 0.90112 1.22962 1.00191 0.94449 1.01273 1.22914 0.97882 0.98363 1.00035 1.23364 0.95519 0.85794 0.98757 1.89182 1.68615 1.36929 1.33696 0.91986 0.77614 0.89249 0.93021 0.88552 0.88212 0.87971 0.87630 0.73585 0.93381 0.89470 0.90724 0.90427 0.90967 0.90785 0.89531 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.57 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C 0.44 10.52 7.42 -10.99 -0.08 10.43 16 11 O -0.57 -15.76 14.80 5.55 0.08 -15.68 16 12 C 0.04 0.63 5.36 -4.98 -0.03 0.61 16 13 N -0.50 -8.22 4.20 -236.08 -0.99 -9.22 16 14 C 0.07 1.19 4.12 -3.82 -0.02 1.18 16 15 C -0.16 -2.13 5.14 -27.88 -0.14 -2.27 16 16 C 0.48 7.11 8.33 36.01 0.30 7.41 16 17 O -0.51 -9.25 16.67 -18.75 -0.31 -9.56 16 18 O -0.52 -5.98 13.42 -39.26 -0.53 -6.51 16 19 C 0.05 0.61 4.57 -3.82 -0.02 0.59 16 20 C 0.08 0.93 3.45 -25.95 -0.09 0.85 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.15 -1.26 6.63 -25.16 -0.17 -1.43 16 23 C -0.15 -1.18 7.09 -25.17 -0.18 -1.36 16 24 C 0.04 0.41 7.63 37.93 0.29 0.70 16 25 O -0.37 -4.68 8.88 -35.23 -0.31 -5.00 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 27 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 28 H 0.09 1.35 7.62 -51.93 -0.40 0.95 16 29 H 0.05 0.80 5.89 -51.93 -0.31 0.49 16 30 H 0.10 2.06 6.49 -51.93 -0.34 1.72 16 31 H 0.10 1.76 5.87 -51.93 -0.30 1.46 16 32 H 0.10 1.35 6.10 -51.93 -0.32 1.04 16 33 H 0.11 1.23 6.34 -51.93 -0.33 0.91 16 34 H 0.41 2.91 9.10 45.56 0.41 3.32 16 35 H 0.05 0.53 5.63 -51.93 -0.29 0.23 16 36 H 0.09 0.91 7.60 -51.93 -0.39 0.52 16 37 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -34.78 342.86 -6.66 -41.44 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.04 Total: 12.78 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.37 Total: 8.70 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.33 Total: -47.73 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.07 Total: -36.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.78 -6.66 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.054 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds