Wall clock time and date at job start Tue Mar 31 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.46937 * 2 1 4 4 C 1.46900 * 111.00397 * 304.62033 * 3 2 1 5 5 C 1.53002 * 109.47356 * 283.41952 * 4 3 2 6 6 O 1.42903 * 109.47074 * 66.60088 * 5 4 3 7 7 C 1.42907 * 113.99522 * 180.02562 * 6 5 4 8 8 C 1.46897 * 111.00524 * 68.57924 * 3 2 1 9 9 N 1.46503 * 109.47336 * 73.63458 * 8 3 2 10 10 N 1.40160 * 126.14171 * 83.18905 * 9 8 3 11 11 C 1.32245 * 107.75616 * 180.02562 * 10 9 8 12 12 C 1.40115 * 125.92687 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00066 * 185.79972 * 12 11 10 14 14 C 1.40041 * 120.00007 * 5.79879 * 12 11 10 15 15 N 1.30797 * 120.00100 * 5.96739 * 14 12 11 16 16 Si 1.86801 * 119.99888 * 185.96508 * 14 12 11 17 17 H 1.48502 * 109.46916 * 94.99408 * 16 14 12 18 18 H 1.48503 * 109.46832 * 214.99140 * 16 14 12 19 19 H 1.48497 * 109.47484 * 334.99050 * 16 14 12 20 20 N 1.38502 * 108.14689 * 0.02562 * 11 10 9 21 21 C 1.46494 * 125.83554 * 180.02562 * 20 11 10 22 22 C 1.34733 * 108.32874 * 359.73493 * 20 11 10 23 23 S 1.71195 * 125.97298 * 180.26133 * 22 20 11 24 24 H 1.08999 * 109.47377 * 306.47514 * 1 2 3 25 25 H 1.09009 * 109.46887 * 66.47645 * 1 2 3 26 26 H 1.08995 * 109.47402 * 186.46944 * 1 2 3 27 27 H 1.08996 * 109.47636 * 240.00029 * 2 1 3 28 28 H 1.09005 * 109.46741 * 119.99070 * 2 1 3 29 29 H 1.09004 * 109.46412 * 43.41343 * 4 3 2 30 30 H 1.08999 * 109.47667 * 163.41568 * 4 3 2 31 31 H 1.08994 * 109.47467 * 186.60524 * 5 4 3 32 32 H 1.09005 * 109.46693 * 306.60597 * 5 4 3 33 33 H 1.08997 * 109.46891 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47148 * 299.99918 * 7 6 5 35 35 H 1.08998 * 109.47159 * 60.00252 * 7 6 5 36 36 H 1.08996 * 109.47631 * 193.64120 * 8 3 2 37 37 H 1.09003 * 109.46800 * 313.63400 * 8 3 2 38 38 H 0.97000 * 120.00259 * 179.97438 * 15 14 12 39 39 H 1.09006 * 109.47291 * 89.99895 * 21 20 11 40 40 H 1.09001 * 109.47329 * 209.99970 * 21 20 11 41 41 H 1.09007 * 109.47408 * 329.99950 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4605 2.1411 -1.1286 5 6 2.1866 1.7469 -2.4163 6 8 1.8906 0.3850 -2.7322 7 6 2.5234 -0.0860 -3.9238 8 6 1.7229 2.0484 1.2766 9 7 2.6183 1.5322 2.3149 10 7 3.9279 1.9637 2.5665 11 6 4.3987 1.2548 3.5788 12 6 5.6749 1.3760 4.1441 13 1 5.9947 0.6837 4.9089 14 6 6.5359 2.3947 3.7175 15 7 6.1095 3.3026 2.8780 16 14 8.2935 2.4570 4.3473 17 1 9.1908 1.7780 3.3783 18 1 8.7135 3.8729 4.5029 19 1 8.3731 1.7698 5.6613 20 7 3.4113 0.3717 3.9831 21 6 3.5221 -0.5966 5.0768 22 6 2.3291 0.5598 3.2028 23 16 0.8474 -0.2901 3.3163 24 1 -0.3634 0.6109 0.8263 25 1 -0.3633 0.4102 -0.9424 26 1 -0.3634 -1.0211 0.1158 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.3986 1.9154 -1.2265 30 1 1.5902 3.2086 -0.9506 31 1 1.8548 2.3894 -3.2318 32 1 3.2616 1.8622 -2.2772 33 1 2.2484 -1.1268 -4.0942 34 1 2.1989 0.5185 -4.7708 35 1 3.6053 -0.0087 -3.8156 36 1 1.8708 3.1230 1.1707 37 1 0.6885 1.8500 1.5573 38 1 6.7057 4.0084 2.5827 39 1 3.1907 -0.1340 6.0066 40 1 2.8977 -1.4632 4.8596 41 1 4.5602 -0.9130 5.1783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794622939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:24 Heat of formation + Delta-G solvation = 46.526984 kcal Electronic energy + Delta-G solvation = -23351.196425 eV Core-core repulsion = 20008.765634 eV Total energy + Delta-G solvation = -3342.430791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84592 -38.56905 -36.89570 -34.23750 -33.80229 -30.92303 -30.50759 -29.11708 -27.11722 -26.53288 -26.04552 -24.45890 -23.03081 -21.59793 -20.85884 -19.77828 -17.72167 -16.74515 -16.51289 -16.35056 -15.70453 -15.51484 -15.08470 -15.05353 -14.51730 -14.43971 -14.37106 -13.47950 -13.32480 -12.60059 -12.35244 -12.16818 -12.14207 -11.79825 -11.75522 -11.71569 -11.51937 -11.47138 -11.07698 -10.97314 -10.81991 -10.59614 -10.52373 -10.23632 -10.01199 -9.50661 -9.46885 -9.11673 -8.85198 -7.94710 -7.02063 -6.73045 -6.62403 -5.08848 2.35834 2.61117 2.80209 2.92932 2.96657 3.40120 3.57084 3.67320 3.86939 4.08736 4.39014 4.87324 5.09750 5.18902 5.31525 5.33143 5.41622 5.47925 5.58627 5.62586 5.64638 5.69742 5.84243 5.87939 5.90349 6.02242 6.09497 6.11346 6.29945 6.49635 6.61374 6.69547 6.83929 6.93070 7.04052 7.20721 7.32602 7.42169 7.64792 7.83572 8.27602 8.38898 9.19463 9.96353 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.005321 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.042882 B = 5261.358768 C = 6678.325129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.056 3.944 5 C 0.069 3.931 6 O -0.382 6.382 7 C 0.031 3.969 8 C 0.315 3.685 9 N -0.366 5.366 10 N -0.330 5.330 11 C 0.373 3.627 12 C -0.441 4.441 13 H 0.097 0.903 14 C 0.079 3.921 15 N -0.738 5.738 16 Si 0.927 3.073 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.259 1.259 20 N -0.515 5.515 21 C 0.101 3.899 22 C 0.464 3.536 23 S -0.713 6.713 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.285 0.715 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -0.413 -7.299 7.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.077 4.077 3 N -0.267 5.267 4 C -0.072 4.072 5 C -0.008 4.008 6 O -0.301 6.301 7 C -0.065 4.065 8 C 0.103 3.897 9 N -0.152 5.152 10 N -0.161 5.161 11 C 0.123 3.877 12 C -0.483 4.483 13 H 0.115 0.885 14 C -0.148 4.148 15 N -0.363 5.363 16 Si 0.751 3.249 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.183 1.183 20 N -0.216 5.216 21 C -0.042 4.042 22 C 0.094 3.906 23 S -0.589 6.589 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.474 -0.023 -8.053 8.187 hybrid contribution 0.838 0.111 0.600 1.037 sum -0.635 0.088 -7.453 7.481 Atomic orbital electron populations 1.22218 0.97924 1.02488 1.00299 1.22344 0.93388 0.88483 1.03458 1.61946 1.59782 1.03443 1.01490 1.22128 0.97897 0.97704 0.89511 1.22570 1.00050 0.82703 0.95476 1.87964 1.71604 1.27727 1.42784 1.22684 0.97026 0.99756 0.87065 1.21809 0.90584 0.96122 0.81138 1.49151 1.13668 1.27680 1.24664 1.79379 0.89096 1.26150 1.21476 1.21337 0.90614 0.84869 0.90856 1.18326 0.93965 1.14496 1.21489 0.88540 1.25812 1.01108 0.93860 0.94012 1.69873 1.36705 1.08497 1.21190 0.85973 0.80217 0.78675 0.80081 1.19154 1.19842 1.18299 1.45993 1.11459 1.34057 1.30046 1.21742 1.03354 0.91761 0.87374 1.22938 0.91738 0.89231 0.86654 1.92714 1.13509 1.62828 1.89827 0.91931 0.93634 0.92560 0.89614 0.90334 0.92538 0.89657 0.93320 0.92301 0.90034 0.94607 0.94186 0.88606 0.89780 0.90419 0.91518 0.89275 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 8.84 37.16 0.33 -2.54 16 2 C 0.05 0.94 5.48 -3.83 -0.02 0.92 16 3 N -0.54 -9.78 4.75 -238.53 -1.13 -10.91 16 4 C 0.06 0.78 5.37 -3.82 -0.02 0.76 16 5 C 0.07 0.90 6.25 37.16 0.23 1.13 16 6 O -0.38 -5.33 7.97 -35.23 -0.28 -5.61 16 7 C 0.03 0.33 11.01 101.05 1.11 1.45 16 8 C 0.32 6.16 5.94 -63.31 -0.38 5.79 16 9 N -0.37 -8.60 3.63 -65.05 -0.24 -8.83 16 10 N -0.33 -8.57 10.84 31.21 0.34 -8.23 16 11 C 0.37 9.33 7.47 -155.27 -1.16 8.17 16 12 C -0.44 -10.42 8.99 -38.20 -0.34 -10.77 16 13 H 0.10 2.05 7.08 -52.49 -0.37 1.68 16 14 C 0.08 1.79 5.49 -17.32 -0.10 1.70 16 15 N -0.74 -18.04 11.96 55.55 0.66 -17.38 16 16 Si 0.93 16.79 29.56 -169.99 -5.03 11.77 16 17 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 20 N -0.51 -11.83 3.17 -124.66 -0.39 -12.23 16 21 C 0.10 1.83 10.66 59.84 0.64 2.47 16 22 C 0.46 11.07 6.92 -86.93 -0.60 10.47 16 23 S -0.71 -17.09 27.29 -107.50 -2.93 -20.02 16 24 H 0.06 1.13 5.82 -51.93 -0.30 0.83 16 25 H 0.04 0.68 6.38 -51.92 -0.33 0.35 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.09 1.58 5.77 -51.93 -0.30 1.28 16 28 H 0.08 1.75 5.61 -51.93 -0.29 1.46 16 29 H 0.06 0.76 5.55 -51.93 -0.29 0.47 16 30 H 0.09 1.06 7.61 -51.93 -0.40 0.66 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.75 7.64 -51.93 -0.40 1.35 16 37 H 0.08 1.64 5.33 -51.93 -0.28 1.36 16 38 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.59 7.62 -51.93 -0.40 1.20 16 41 H 0.08 1.34 7.27 -51.92 -0.38 0.96 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -30.29 339.86 -10.01 -40.30 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.82 Total: 6.47 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: -0.31 Total: 19.55 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.76 Total: -57.58 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.28 Total: -5.61 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: -17.09 SS G_CDS: -2.93 Total: -20.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.29 -10.01 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.825 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds