Wall clock time and date at job start Tue Mar 31 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.46937 * 2 1 4 4 C 1.46900 * 111.00397 * 304.62033 * 3 2 1 5 5 C 1.53002 * 109.47356 * 283.41952 * 4 3 2 6 6 O 1.42903 * 109.47074 * 66.60088 * 5 4 3 7 7 C 1.42907 * 113.99522 * 180.02562 * 6 5 4 8 8 C 1.46897 * 111.00524 * 68.57924 * 3 2 1 9 9 N 1.46503 * 109.47336 * 73.63458 * 8 3 2 10 10 N 1.40160 * 126.14171 * 83.18905 * 9 8 3 11 11 C 1.32245 * 107.75616 * 180.02562 * 10 9 8 12 12 C 1.40115 * 125.92687 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00066 * 185.79972 * 12 11 10 14 14 C 1.40041 * 120.00007 * 5.79879 * 12 11 10 15 15 N 1.30797 * 120.00100 * 5.96739 * 14 12 11 16 16 Si 1.86801 * 119.99888 * 185.96508 * 14 12 11 17 17 H 1.48502 * 109.46916 * 94.99408 * 16 14 12 18 18 H 1.48503 * 109.46832 * 214.99140 * 16 14 12 19 19 H 1.48497 * 109.47484 * 334.99050 * 16 14 12 20 20 N 1.38502 * 108.14689 * 0.02562 * 11 10 9 21 21 C 1.46494 * 125.83554 * 180.02562 * 20 11 10 22 22 C 1.34733 * 108.32874 * 359.73493 * 20 11 10 23 23 S 1.71195 * 125.97298 * 180.26133 * 22 20 11 24 24 H 1.08999 * 109.47377 * 306.47514 * 1 2 3 25 25 H 1.09009 * 109.46887 * 66.47645 * 1 2 3 26 26 H 1.08995 * 109.47402 * 186.46944 * 1 2 3 27 27 H 1.08996 * 109.47636 * 240.00029 * 2 1 3 28 28 H 1.09005 * 109.46741 * 119.99070 * 2 1 3 29 29 H 1.09004 * 109.46412 * 43.41343 * 4 3 2 30 30 H 1.08999 * 109.47667 * 163.41568 * 4 3 2 31 31 H 1.08994 * 109.47467 * 186.60524 * 5 4 3 32 32 H 1.09005 * 109.46693 * 306.60597 * 5 4 3 33 33 H 1.08997 * 109.46891 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47148 * 299.99918 * 7 6 5 35 35 H 1.08998 * 109.47159 * 60.00252 * 7 6 5 36 36 H 1.08996 * 109.47631 * 193.64120 * 8 3 2 37 37 H 1.09003 * 109.46800 * 313.63400 * 8 3 2 38 38 H 0.97000 * 120.00259 * 179.97438 * 15 14 12 39 39 H 1.09006 * 109.47291 * 89.99895 * 21 20 11 40 40 H 1.09001 * 109.47329 * 209.99970 * 21 20 11 41 41 H 1.09007 * 109.47408 * 329.99950 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4605 2.1411 -1.1286 5 6 2.1866 1.7469 -2.4163 6 8 1.8906 0.3850 -2.7322 7 6 2.5234 -0.0860 -3.9238 8 6 1.7229 2.0484 1.2766 9 7 2.6183 1.5322 2.3149 10 7 3.9279 1.9637 2.5665 11 6 4.3987 1.2548 3.5788 12 6 5.6749 1.3760 4.1441 13 1 5.9947 0.6837 4.9089 14 6 6.5359 2.3947 3.7175 15 7 6.1095 3.3026 2.8780 16 14 8.2935 2.4570 4.3473 17 1 9.1908 1.7780 3.3783 18 1 8.7135 3.8729 4.5029 19 1 8.3731 1.7698 5.6613 20 7 3.4113 0.3717 3.9831 21 6 3.5221 -0.5966 5.0768 22 6 2.3291 0.5598 3.2028 23 16 0.8474 -0.2901 3.3163 24 1 -0.3634 0.6109 0.8263 25 1 -0.3633 0.4102 -0.9424 26 1 -0.3634 -1.0211 0.1158 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.3986 1.9154 -1.2265 30 1 1.5902 3.2086 -0.9506 31 1 1.8548 2.3894 -3.2318 32 1 3.2616 1.8622 -2.2772 33 1 2.2484 -1.1268 -4.0942 34 1 2.1989 0.5185 -4.7708 35 1 3.6053 -0.0087 -3.8156 36 1 1.8708 3.1230 1.1707 37 1 0.6885 1.8500 1.5573 38 1 6.7057 4.0084 2.5827 39 1 3.1907 -0.1340 6.0066 40 1 2.8977 -1.4632 4.8596 41 1 4.5602 -0.9130 5.1783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794622939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:23 Heat of formation + Delta-G solvation = 28.261552 kcal Electronic energy + Delta-G solvation = -23351.988474 eV Core-core repulsion = 20008.765634 eV Total energy + Delta-G solvation = -3343.222840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.61883 -39.81502 -38.09794 -35.94047 -35.49789 -32.59549 -31.82136 -30.60678 -28.56591 -28.24388 -27.04474 -26.02075 -24.33463 -23.23579 -22.63027 -21.18127 -19.46351 -18.32879 -17.86276 -17.55083 -17.40598 -16.99081 -16.56336 -16.43937 -16.00679 -15.73049 -15.68338 -15.00552 -14.72351 -14.00891 -13.80998 -13.66119 -13.44085 -13.23166 -13.20303 -13.02363 -12.81558 -12.69090 -12.64133 -12.42214 -12.31695 -11.98023 -11.92317 -11.70358 -11.63275 -11.34307 -10.86167 -10.64792 -10.45589 -9.35177 -8.76411 -8.59257 -8.48837 -6.93015 0.56250 0.83818 1.29682 1.45390 1.61072 1.69700 1.87984 2.14200 2.43575 2.89134 2.97653 3.11084 3.62029 4.00949 4.05025 4.11175 4.21667 4.36618 4.44280 4.45736 4.47106 4.53544 4.57877 4.60061 4.68287 4.70878 4.73132 4.81602 4.87543 4.95004 5.11961 5.18464 5.22636 5.29587 5.48045 5.77127 5.94398 5.98270 6.20573 6.31543 6.51236 6.59546 7.36522 8.27087 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.005321 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.042882 B = 5261.358768 C = 6678.325129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 N -0.553 5.553 4 C 0.053 3.947 5 C 0.072 3.928 6 O -0.406 6.406 7 C 0.028 3.972 8 C 0.312 3.688 9 N -0.366 5.366 10 N -0.364 5.364 11 C 0.352 3.648 12 C -0.456 4.456 13 H 0.117 0.883 14 C 0.037 3.963 15 N -0.777 5.777 16 Si 1.005 2.995 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.245 1.245 20 N -0.518 5.518 21 C 0.096 3.904 22 C 0.452 3.548 23 S -0.730 6.730 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.291 0.709 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -0.157 -7.641 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.064 4.064 3 N -0.278 5.278 4 C -0.074 4.074 5 C -0.004 4.004 6 O -0.325 6.325 7 C -0.069 4.069 8 C 0.101 3.899 9 N -0.152 5.152 10 N -0.196 5.196 11 C 0.103 3.897 12 C -0.497 4.497 13 H 0.135 0.865 14 C -0.186 4.186 15 N -0.402 5.402 16 Si 0.824 3.176 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.168 1.168 20 N -0.219 5.219 21 C -0.046 4.046 22 C 0.081 3.919 23 S -0.606 6.606 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.540 0.220 -8.404 8.425 hybrid contribution 0.540 0.044 0.646 0.843 sum 0.000 0.264 -7.758 7.762 Atomic orbital electron populations 1.22045 0.96537 1.01949 1.00755 1.22114 0.94306 0.88638 1.01381 1.61943 1.60547 1.03504 1.01839 1.22324 0.98411 0.98209 0.88437 1.22557 0.98883 0.83139 0.95867 1.87905 1.72070 1.28210 1.44350 1.22835 0.96702 1.00690 0.86623 1.21983 0.89866 0.96653 0.81378 1.49488 1.13295 1.27306 1.25081 1.79272 0.90293 1.27450 1.22593 1.21727 0.91450 0.85369 0.91166 1.18884 0.93726 1.15204 1.21913 0.86499 1.26866 1.05268 0.92830 0.93616 1.69966 1.38639 1.09284 1.22289 0.84822 0.74119 0.78797 0.79846 1.19070 1.19456 1.16798 1.46279 1.10667 1.34320 1.30608 1.22011 1.04908 0.91002 0.86633 1.23012 0.91984 0.89619 0.87270 1.92603 1.14190 1.63522 1.90309 0.93377 0.91448 0.93134 0.89522 0.94347 0.91511 0.87991 0.90070 0.94056 0.89107 0.92515 0.94576 0.87656 0.89900 0.89785 0.90108 0.89297 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 8.84 71.98 0.64 -4.49 16 2 C 0.06 2.37 5.48 86.30 0.47 2.84 16 3 N -0.55 -20.00 4.75 -908.58 -4.31 -24.31 16 4 C 0.05 1.43 5.37 86.30 0.46 1.89 16 5 C 0.07 1.77 6.25 71.98 0.45 2.22 16 6 O -0.41 -10.76 7.97 -148.98 -1.19 -11.95 16 7 C 0.03 0.54 11.01 113.37 1.25 1.79 16 8 C 0.31 12.36 5.94 170.81 1.01 13.37 16 9 N -0.37 -17.53 3.63 -359.72 -1.30 -18.83 16 10 N -0.36 -19.24 10.84 -55.17 -0.60 -19.84 16 11 C 0.35 17.73 7.47 133.52 1.00 18.73 16 12 C -0.46 -21.23 8.99 23.16 0.21 -21.02 16 13 H 0.12 4.76 7.08 -2.91 -0.02 4.74 16 14 C 0.04 1.66 5.49 85.28 0.47 2.13 16 15 N -0.78 -38.01 11.96 21.84 0.26 -37.75 16 16 Si 1.01 33.08 29.56 68.60 2.03 35.11 16 17 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 18 H -0.27 -8.66 7.11 99.48 0.71 -7.95 16 19 H -0.25 -7.45 7.11 99.48 0.71 -6.74 16 20 N -0.52 -23.96 3.17 -548.30 -1.74 -25.70 16 21 C 0.10 3.42 10.66 127.77 1.36 4.78 16 22 C 0.45 21.96 6.92 179.06 1.24 23.20 16 23 S -0.73 -35.47 27.29 -56.49 -1.54 -37.01 16 24 H 0.05 1.74 5.82 -2.39 -0.01 1.72 16 25 H 0.07 1.92 6.38 -2.38 -0.02 1.91 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 3.22 5.77 -2.39 -0.01 3.20 16 28 H 0.04 1.75 5.61 -2.38 -0.01 1.74 16 29 H 0.07 1.66 5.55 -2.38 -0.01 1.65 16 30 H 0.10 2.36 7.61 -2.39 -0.02 2.35 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 3.88 7.64 -2.39 -0.02 3.86 16 37 H 0.08 3.28 5.33 -2.39 -0.01 3.27 16 38 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 39 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.09 3.16 7.62 -2.39 -0.02 3.14 16 41 H 0.11 3.23 7.27 -2.38 -0.02 3.21 16 Total: -1.00 -65.83 339.86 1.21 -64.62 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 1.04 Total: 30.21 kcal Atomic # 6 Polarization: 36.88 SS G_CDS: 8.56 Total: 45.44 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -7.69 Total: -126.43 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.19 Total: -11.95 kcal Atomic # 14 Polarization: 33.08 SS G_CDS: 2.03 Total: 35.11 kcal Atomic # 16 Polarization: -35.47 SS G_CDS: -1.54 Total: -37.01 kcal Total: -65.83 1.21 -64.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.885 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds