Wall clock time and date at job start Tue Mar 31 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46729 * 2 1 4 4 C 1.42903 * 113.99770 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47204 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47378 * 64.99537 * 5 4 3 7 7 C 1.46900 * 110.99728 * 66.04954 * 6 5 4 8 8 C 1.46905 * 111.00051 * 189.99991 * 6 5 4 9 9 N 1.46500 * 109.47132 * 169.99846 * 8 6 5 10 10 N 1.40169 * 126.14189 * 90.02510 * 9 8 6 11 11 C 1.32234 * 107.75528 * 180.02562 * 10 9 8 12 12 C 1.40126 * 125.92517 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00063 * 179.97438 * 12 11 10 14 14 C 1.40036 * 119.99635 * 359.97438 * 12 11 10 15 15 N 1.30793 * 120.00324 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99663 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47130 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46925 * 120.00216 * 16 14 12 19 19 H 1.48493 * 109.47010 * 239.99913 * 16 14 12 20 20 N 1.38500 * 108.14902 * 0.02562 * 11 10 9 21 21 C 1.46503 * 125.83711 * 179.97438 * 20 11 10 22 22 C 1.34729 * 108.33076 * 359.73433 * 20 11 10 23 23 S 1.71195 * 125.97607 * 180.26291 * 22 20 11 24 24 H 1.08998 * 109.47324 * 299.99942 * 1 2 3 25 25 H 1.09009 * 109.47209 * 59.99960 * 1 2 3 26 26 H 1.08996 * 109.46894 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46844 * 240.00283 * 2 1 3 28 28 H 1.08996 * 109.47165 * 119.99714 * 2 1 3 29 29 H 1.08997 * 109.47505 * 59.99410 * 4 3 2 30 30 H 1.09005 * 109.46914 * 299.99827 * 4 3 2 31 31 H 1.09004 * 109.46862 * 304.99640 * 5 4 3 32 32 H 1.09000 * 109.47250 * 184.99664 * 5 4 3 33 33 H 1.08996 * 109.47030 * 59.99921 * 7 6 5 34 34 H 1.08999 * 109.46702 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.46890 * 299.99929 * 7 6 5 36 36 H 1.08997 * 109.46807 * 290.00444 * 8 6 5 37 37 H 1.09000 * 109.46636 * 50.00310 * 8 6 5 38 38 H 0.96997 * 120.00323 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.47202 * 89.99659 * 21 20 11 40 40 H 1.08998 * 109.47717 * 210.00190 * 21 20 11 41 41 H 1.09001 * 109.46747 * 330.00234 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 7 3.3865 3.5618 1.2559 7 6 4.1159 3.0050 2.4030 8 6 3.5327 5.0224 1.1978 9 7 2.8714 5.6259 2.3575 10 7 3.4629 5.8937 3.5997 11 6 2.5409 6.4369 4.3766 12 6 2.7236 6.8526 5.7022 13 1 1.9005 7.2865 6.2504 14 6 3.9736 6.7052 6.3162 15 7 4.9703 6.1792 5.6525 16 14 4.2173 7.2600 8.0832 17 1 2.9446 7.8177 8.6070 18 1 4.6291 6.1000 8.9138 19 1 5.2723 8.3039 8.1331 20 7 1.3630 6.5226 3.6530 21 6 0.0931 7.0645 4.1428 22 6 1.5861 6.0273 2.4201 23 16 0.4370 5.9225 1.1554 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8907 30 1 3.8340 0.9765 0.8892 31 1 3.3491 3.4419 -0.8413 32 1 4.9081 3.0256 -0.0898 33 1 5.1834 3.1859 2.2773 34 1 3.7713 3.4836 3.3196 35 1 3.9339 1.9320 2.4631 36 1 4.5912 5.2822 1.2071 37 1 3.0745 5.3972 0.2825 38 1 5.8362 6.0775 6.0776 39 1 0.0493 8.1333 3.9335 40 1 -0.7340 6.5619 3.6414 41 1 0.0191 6.9015 5.2180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794638788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:26 Heat of formation + Delta-G solvation = 23.486671 kcal Electronic energy + Delta-G solvation = -22934.506732 eV Core-core repulsion = 19591.076838 eV Total energy + Delta-G solvation = -3343.429894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.60800 -39.50099 -38.09776 -35.93329 -35.46358 -32.78833 -32.21631 -30.24355 -29.29579 -28.25182 -27.46274 -25.22334 -23.62212 -23.17073 -22.62434 -22.00442 -19.46450 -18.42396 -17.78492 -17.69267 -17.40677 -16.92322 -16.55522 -16.51813 -16.06709 -15.73700 -15.31123 -14.96658 -14.57480 -14.07954 -13.78194 -13.73122 -13.62488 -13.43218 -13.10351 -13.07155 -12.90066 -12.70881 -12.66784 -12.51399 -12.38656 -12.09545 -11.94395 -11.82152 -11.66658 -11.36015 -10.90182 -10.65658 -10.42609 -9.39004 -8.79281 -8.61985 -8.50867 -6.95843 0.55924 0.86757 1.27472 1.45347 1.61924 1.69891 1.86067 2.13644 2.43856 2.81416 2.94009 3.10330 3.59330 3.97666 4.04592 4.09837 4.17705 4.23540 4.32539 4.36650 4.46332 4.47149 4.49724 4.51978 4.58679 4.63342 4.71426 4.83481 4.88519 4.94168 5.03688 5.06603 5.10827 5.28057 5.29754 5.70344 5.79399 5.98450 6.18294 6.46979 6.49969 6.58301 7.34550 8.25077 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.004480 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.142595 B = 6248.139723 C = 7025.952699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.403 6.403 4 C 0.069 3.931 5 C 0.062 3.938 6 N -0.555 5.555 7 C 0.041 3.959 8 C 0.326 3.674 9 N -0.374 5.374 10 N -0.368 5.368 11 C 0.353 3.647 12 C -0.451 4.451 13 H 0.117 0.883 14 C 0.037 3.963 15 N -0.775 5.775 16 Si 1.005 2.995 17 H -0.245 1.245 18 H -0.268 1.268 19 H -0.268 1.268 20 N -0.519 5.519 21 C 0.096 3.904 22 C 0.467 3.533 23 S -0.737 6.737 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.291 0.709 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -7.640 -1.845 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.322 6.322 4 C -0.007 4.007 5 C -0.065 4.065 6 N -0.281 5.281 7 C -0.107 4.107 8 C 0.115 3.885 9 N -0.160 5.160 10 N -0.200 5.200 11 C 0.104 3.896 12 C -0.493 4.493 13 H 0.135 0.865 14 C -0.186 4.186 15 N -0.399 5.399 16 Si 0.825 3.175 17 H -0.168 1.168 18 H -0.193 1.193 19 H -0.193 1.193 20 N -0.220 5.220 21 C -0.046 4.046 22 C 0.096 3.904 23 S -0.614 6.614 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.018 -8.070 -2.682 8.740 hybrid contribution 0.919 0.497 1.162 1.563 sum 2.937 -7.573 -1.520 8.264 Atomic orbital electron populations 1.21732 0.93960 1.02939 1.01955 1.22576 0.95792 0.83484 1.00539 1.88090 1.21634 1.27096 1.95416 1.22592 0.81574 0.95481 1.01086 1.22181 0.99184 0.94594 0.90514 1.61674 1.58587 1.03006 1.04870 1.22231 0.95358 0.99963 0.93134 1.21807 0.95424 0.86668 0.84621 1.49431 1.06374 1.46629 1.13519 1.79242 1.16212 1.35546 0.89024 1.21700 0.79204 0.93860 0.94821 1.18941 0.99570 1.38651 0.92120 0.86481 1.26851 0.93904 0.92866 1.04985 1.69962 1.02547 1.28176 1.39254 0.84776 0.79995 0.78522 0.74244 1.16815 1.19331 1.19300 1.46247 1.13531 1.52672 1.09519 1.22013 0.81303 0.99769 1.01487 1.22835 0.89377 0.88796 0.89359 1.92642 1.47355 1.84941 1.36426 0.94044 0.92606 0.88763 0.91710 0.93458 0.90109 0.93167 0.89817 0.90519 0.94738 0.94089 0.90632 0.91062 0.87586 0.89794 0.89970 0.89515 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 10.28 71.98 0.74 -2.74 16 2 C 0.05 1.24 6.66 71.98 0.48 1.72 16 3 O -0.40 -12.71 10.29 -148.98 -1.53 -14.25 16 4 C 0.07 1.71 5.99 71.98 0.43 2.15 16 5 C 0.06 1.71 5.34 86.30 0.46 2.17 16 6 N -0.55 -20.41 4.85 -934.88 -4.53 -24.95 16 7 C 0.04 1.49 9.22 127.69 1.18 2.67 16 8 C 0.33 13.13 5.92 170.80 1.01 14.14 16 9 N -0.37 -18.03 3.34 -359.72 -1.20 -19.23 16 10 N -0.37 -18.97 9.69 -55.17 -0.53 -19.51 16 11 C 0.35 17.58 7.50 133.53 1.00 18.59 16 12 C -0.45 -20.70 8.98 23.16 0.21 -20.49 16 13 H 0.12 4.72 7.11 -2.91 -0.02 4.70 16 14 C 0.04 1.62 5.50 85.28 0.47 2.09 16 15 N -0.77 -36.85 11.90 21.84 0.26 -36.59 16 16 Si 1.01 32.44 29.56 68.60 2.03 34.47 16 17 H -0.25 -7.36 7.11 99.48 0.71 -6.65 16 18 H -0.27 -8.53 7.11 99.48 0.71 -7.83 16 19 H -0.27 -8.52 7.11 99.48 0.71 -7.81 16 20 N -0.52 -24.26 3.17 -548.31 -1.74 -26.00 16 21 C 0.10 3.47 10.64 127.77 1.36 4.83 16 22 C 0.47 23.42 7.84 179.06 1.40 24.83 16 23 S -0.74 -38.52 29.50 -56.49 -1.67 -40.18 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.20 6.33 -2.38 -0.02 1.18 16 31 H 0.08 2.36 7.93 -2.38 -0.02 2.34 16 32 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.85 6.64 -2.39 -0.02 1.83 16 35 H 0.08 2.42 6.37 -2.39 -0.02 2.41 16 36 H 0.07 2.68 8.12 -2.39 -0.02 2.66 16 37 H 0.11 4.29 7.43 -2.39 -0.02 4.27 16 38 H 0.29 12.46 8.30 -92.71 -0.77 11.69 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 3.19 7.62 -2.39 -0.02 3.17 16 41 H 0.11 3.30 7.32 -2.39 -0.02 3.28 16 Total: -1.00 -68.73 353.91 0.84 -67.89 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 1.02 Total: 28.41 kcal Atomic # 6 Polarization: 41.20 SS G_CDS: 8.74 Total: 49.94 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -7.75 Total: -126.28 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.53 Total: -14.25 kcal Atomic # 14 Polarization: 32.44 SS G_CDS: 2.03 Total: 34.47 kcal Atomic # 16 Polarization: -38.52 SS G_CDS: -1.67 Total: -40.18 kcal Total: -68.73 0.84 -67.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794638788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.372 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds