Wall clock time and date at job start Tue Mar 31 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46893 * 179.97438 * 15 14 12 17 17 C 1.47020 * 110.99666 * 46.36991 * 16 15 14 18 18 C 1.53096 * 109.25182 * 182.38884 * 17 16 15 19 19 O 1.43016 * 109.26299 * 303.14768 * 18 17 16 20 20 C 1.43010 * 113.73473 * 58.67638 * 19 18 17 21 21 H 1.08999 * 109.54792 * 61.28096 * 20 19 18 22 22 C 1.50702 * 109.50653 * 181.39507 * 20 19 18 23 23 O 1.20825 * 119.99644 * 4.78036 * 22 20 19 24 24 O 1.34226 * 120.00020 * 184.78170 * 22 20 19 25 25 C 1.47015 * 110.99823 * 170.00018 * 16 15 14 26 26 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 29 29 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 30 30 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 31 31 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47057 * 299.99739 * 14 12 2 33 33 H 1.08996 * 109.47084 * 60.00703 * 14 12 2 34 34 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 35 35 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 36 36 H 1.08995 * 109.50269 * 302.32443 * 17 16 15 37 37 H 1.08998 * 109.50546 * 62.45770 * 17 16 15 38 38 H 1.09009 * 109.50044 * 183.21414 * 18 17 16 39 39 H 1.09005 * 109.54422 * 63.11229 * 18 17 16 40 40 H 0.96698 * 117.00049 * 179.97438 * 24 22 20 41 41 H 1.08998 * 109.50844 * 297.54696 * 25 16 15 42 42 H 1.09009 * 109.50630 * 57.63589 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.5604 -4.8899 -0.9935 18 6 -0.2142 -6.2083 -0.9178 19 8 0.6887 -7.2984 -1.1219 20 6 1.7573 -7.3463 -0.1727 21 1 1.3489 -7.4720 0.8301 22 6 2.6654 -8.5049 -0.4952 23 8 2.4733 -9.1644 -1.4892 24 8 3.6876 -8.8040 0.3216 25 6 2.5520 -6.0394 -0.2407 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5139 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0284 -0.5139 31 1 4.0311 4.4434 0.8503 32 1 0.7591 -2.5302 0.8897 33 1 0.7585 -2.5298 -0.8903 34 1 3.0057 -3.5772 -0.8922 35 1 3.0069 -3.5779 0.8878 36 1 -0.1130 -4.0594 -0.7819 37 1 0.9821 -4.7723 -1.9916 38 1 -0.9834 -6.2232 -1.6901 39 1 -0.6812 -6.3011 0.0627 40 1 4.2424 -9.5561 0.0733 41 1 3.0055 -5.9402 -1.2269 42 1 3.3328 -6.0476 0.5199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820579811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:02 Heat of formation + Delta-G solvation = -154.509117 kcal Electronic energy + Delta-G solvation = -24636.823132 eV Core-core repulsion = 20810.629140 eV Total energy + Delta-G solvation = -3826.193993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97462 -39.67272 -38.90105 -36.65899 -36.14110 -34.83691 -32.70930 -32.22852 -31.08576 -28.36143 -27.41816 -25.83643 -24.90568 -23.91246 -22.63384 -21.44103 -20.63387 -18.58144 -18.35352 -17.55645 -16.68926 -16.59882 -16.47382 -16.40177 -15.72113 -15.57936 -15.29476 -14.87087 -14.59318 -14.49100 -14.14862 -13.89381 -13.37117 -13.11748 -12.48307 -12.42065 -12.23367 -12.20114 -12.00107 -11.89116 -11.85198 -11.54382 -11.23915 -11.14853 -11.03090 -10.87347 -10.64330 -10.58370 -10.18571 -10.11056 -9.63512 -8.95471 -8.67599 -8.46181 -7.68219 -6.06694 -4.11567 1.75715 2.17083 3.28219 3.28877 3.35082 3.37542 3.41991 3.77035 4.01786 4.29103 4.43212 4.54789 4.64280 4.65145 4.85668 4.94813 5.08633 5.12773 5.17024 5.21833 5.28360 5.37379 5.44268 5.54382 5.55132 5.69378 5.86858 5.95191 6.03597 6.07145 6.17961 6.53265 6.65763 6.67595 7.02039 7.41098 7.50034 7.50473 7.89660 8.20793 8.37516 8.87465 9.05061 9.53768 11.01500 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026863 B = 0.002726 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.067865 B =10268.706524 C =10831.726470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.505 3.495 13 O -0.544 6.544 14 C -0.142 4.142 15 C 0.073 3.927 16 N -0.535 5.535 17 C 0.003 3.997 18 C 0.066 3.934 19 O -0.363 6.363 20 C 0.106 3.894 21 H 0.109 0.891 22 C 0.488 3.512 23 O -0.494 6.494 24 O -0.510 6.510 25 C 0.031 3.969 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.051 0.949 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 -21.173 -1.750 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.290 3.710 13 O -0.422 6.422 14 C -0.183 4.183 15 C -0.055 4.055 16 N -0.260 5.260 17 C -0.125 4.125 18 C -0.010 4.010 19 O -0.282 6.282 20 C 0.047 3.953 21 H 0.126 0.874 22 C 0.328 3.672 23 O -0.380 6.380 24 O -0.322 6.322 25 C -0.098 4.098 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.276 0.724 41 H 0.069 0.931 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.702 -21.015 -1.660 22.443 hybrid contribution 0.809 0.304 0.178 0.882 sum -6.893 -20.711 -1.482 21.878 Atomic orbital electron populations 1.21644 0.81432 1.02670 1.00347 1.48162 1.06199 1.07879 1.71220 1.19300 0.92553 0.78099 0.97565 1.21463 1.36431 1.06257 0.92287 0.92396 1.24950 0.95350 0.96405 0.97490 1.69941 1.38431 1.14351 1.30706 0.86431 0.78100 0.78305 0.84522 1.19770 1.20857 1.20966 1.20219 0.88060 0.85083 0.77594 1.90674 1.13944 1.87305 1.50273 1.21801 0.99385 0.93065 1.04024 1.21889 0.94964 0.85548 1.03061 1.62340 1.11849 1.03253 1.48550 1.23012 0.95306 0.99385 0.94804 1.22834 0.91133 0.84200 1.02829 1.88045 1.38014 1.49593 1.52561 1.21331 0.88091 0.90854 0.95036 0.87383 1.22778 0.79527 0.84504 0.80441 1.90754 1.70136 1.50324 1.26740 1.84483 1.41016 1.53276 1.53466 1.22621 0.95432 0.89219 1.02486 0.93810 0.90745 0.92370 0.93865 0.95021 0.92749 0.88455 0.89522 0.93477 0.89069 0.88241 0.93349 0.87441 0.91531 0.72417 0.93098 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.86 16 2 N -0.60 -12.41 2.86 -182.95 -0.52 -12.93 16 3 C 0.24 6.33 5.16 -5.20 -0.03 6.30 16 4 C -0.53 -14.80 9.39 -34.45 -0.32 -15.13 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.50 10.02 7.67 -10.98 -0.08 9.93 16 13 O -0.54 -13.28 15.56 5.56 0.09 -13.19 16 14 C -0.14 -1.91 3.52 -27.88 -0.10 -2.01 16 15 C 0.07 0.95 4.57 -3.82 -0.02 0.93 16 16 N -0.53 -5.64 4.88 -234.29 -1.14 -6.78 16 17 C 0.00 0.03 4.94 -3.71 -0.02 0.01 16 18 C 0.07 0.53 7.01 37.21 0.26 0.79 16 19 O -0.36 -3.97 10.01 -55.11 -0.55 -4.52 16 20 C 0.11 1.01 3.33 -27.83 -0.09 0.92 16 21 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 22 C 0.49 4.84 7.66 36.01 0.28 5.12 16 23 O -0.49 -6.64 17.27 -25.46 -0.44 -7.08 16 24 O -0.51 -3.47 13.42 -39.25 -0.53 -4.00 16 25 C 0.03 0.31 4.89 -3.71 -0.02 0.29 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 28 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 29 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.10 1.18 7.40 -51.93 -0.38 0.79 16 33 H 0.09 0.96 6.24 -51.93 -0.32 0.64 16 34 H 0.05 0.67 8.04 -51.93 -0.42 0.26 16 35 H 0.09 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.10 0.76 6.05 -51.93 -0.31 0.45 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.42 1.05 9.10 45.56 0.41 1.46 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -36.65 350.01 -7.24 -43.89 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.51 Total: -2.19 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 0.37 Total: 10.62 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.93 Total: -45.52 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.43 Total: -28.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.65 -7.24 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820579811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.620 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds