Wall clock time and date at job start Tue Mar 31 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46893 * 179.97438 * 15 14 12 17 17 C 1.47020 * 110.99666 * 46.36991 * 16 15 14 18 18 C 1.53096 * 109.25182 * 182.38884 * 17 16 15 19 19 O 1.43016 * 109.26299 * 303.14768 * 18 17 16 20 20 C 1.43010 * 113.73473 * 58.67638 * 19 18 17 21 21 H 1.08999 * 109.54792 * 61.28096 * 20 19 18 22 22 C 1.50702 * 109.50653 * 181.39507 * 20 19 18 23 23 O 1.20825 * 119.99644 * 4.78036 * 22 20 19 24 24 O 1.34226 * 120.00020 * 184.78170 * 22 20 19 25 25 C 1.47015 * 110.99823 * 170.00018 * 16 15 14 26 26 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 29 29 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 30 30 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 31 31 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47057 * 299.99739 * 14 12 2 33 33 H 1.08996 * 109.47084 * 60.00703 * 14 12 2 34 34 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 35 35 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 36 36 H 1.08995 * 109.50269 * 302.32443 * 17 16 15 37 37 H 1.08998 * 109.50546 * 62.45770 * 17 16 15 38 38 H 1.09009 * 109.50044 * 183.21414 * 18 17 16 39 39 H 1.09005 * 109.54422 * 63.11229 * 18 17 16 40 40 H 0.96698 * 117.00049 * 179.97438 * 24 22 20 41 41 H 1.08998 * 109.50844 * 297.54696 * 25 16 15 42 42 H 1.09009 * 109.50630 * 57.63589 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.5604 -4.8899 -0.9935 18 6 -0.2142 -6.2083 -0.9178 19 8 0.6887 -7.2984 -1.1219 20 6 1.7573 -7.3463 -0.1727 21 1 1.3489 -7.4720 0.8301 22 6 2.6654 -8.5049 -0.4952 23 8 2.4733 -9.1644 -1.4892 24 8 3.6876 -8.8040 0.3216 25 6 2.5520 -6.0394 -0.2407 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5139 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0284 -0.5139 31 1 4.0311 4.4434 0.8503 32 1 0.7591 -2.5302 0.8897 33 1 0.7585 -2.5298 -0.8903 34 1 3.0057 -3.5772 -0.8922 35 1 3.0069 -3.5779 0.8878 36 1 -0.1130 -4.0594 -0.7819 37 1 0.9821 -4.7723 -1.9916 38 1 -0.9834 -6.2232 -1.6901 39 1 -0.6812 -6.3011 0.0627 40 1 4.2424 -9.5561 0.0733 41 1 3.0055 -5.9402 -1.2269 42 1 3.3328 -6.0476 0.5199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820579811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:02 Heat of formation + Delta-G solvation = -183.785670 kcal Electronic energy + Delta-G solvation = -24638.092659 eV Core-core repulsion = 20810.629140 eV Total energy + Delta-G solvation = -3827.463519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73492 -40.81222 -40.07251 -37.46619 -36.99452 -36.52312 -34.73931 -33.07588 -32.13881 -29.89684 -28.58756 -27.26550 -25.91884 -25.13027 -23.99326 -22.38560 -21.45247 -19.91878 -19.21851 -18.70463 -18.43139 -17.77002 -17.30808 -17.23331 -17.07387 -16.81502 -16.45424 -16.15644 -15.76564 -15.52117 -15.24295 -14.90487 -14.61822 -14.05969 -14.01518 -13.77432 -13.55993 -13.43468 -13.27885 -13.07599 -12.84932 -12.76338 -12.64013 -12.54756 -12.33793 -12.20436 -12.03089 -11.88591 -11.66712 -11.40775 -10.84518 -10.65207 -10.59820 -9.54932 -9.40301 -8.22585 -6.37578 0.99426 1.37112 1.39428 1.51371 1.55190 1.84849 2.24277 2.39870 2.70803 3.07113 3.12147 3.52792 3.74372 3.85449 3.90557 3.94770 4.11048 4.16135 4.27365 4.38551 4.41861 4.51746 4.60406 4.61649 4.74503 4.83734 4.86880 4.94993 4.97037 5.00394 5.07702 5.23461 5.47935 5.56799 5.72975 5.81003 5.84674 5.95960 6.06139 6.70377 6.80720 6.89094 7.28627 7.49408 8.84700 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026863 B = 0.002726 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.067865 B =10268.706524 C =10831.726470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.122 4.122 15 C 0.080 3.920 16 N -0.527 5.527 17 C -0.002 4.002 18 C 0.065 3.935 19 O -0.388 6.388 20 C 0.108 3.892 21 H 0.130 0.870 22 C 0.494 3.506 23 O -0.536 6.536 24 O -0.500 6.500 25 C 0.032 3.968 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.099 0.901 29 H -0.004 1.004 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.037 0.963 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.435 0.565 41 H 0.036 0.964 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 -22.283 -0.253 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.162 4.162 15 C -0.048 4.048 16 N -0.252 5.252 17 C -0.129 4.129 18 C -0.010 4.010 19 O -0.307 6.307 20 C 0.049 3.951 21 H 0.147 0.853 22 C 0.336 3.664 23 O -0.425 6.425 24 O -0.315 6.315 25 C -0.097 4.097 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.014 0.986 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.055 0.945 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.298 0.702 41 H 0.054 0.946 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.882 -22.152 -0.152 24.257 hybrid contribution 1.496 0.619 -0.323 1.651 sum -8.387 -21.533 -0.475 23.113 Atomic orbital electron populations 1.21972 0.77633 1.04247 1.02659 1.48199 1.08568 1.06330 1.71124 1.18754 0.91076 0.80607 0.96037 1.21741 1.36622 1.06469 0.93062 0.92686 1.25893 0.94948 0.96494 1.02043 1.70060 1.39064 1.14864 1.33064 0.85343 0.77824 0.78429 0.79069 1.18879 1.20871 1.19469 1.21368 0.87793 0.86742 0.75878 1.90644 1.16839 1.88264 1.52658 1.21733 0.98924 0.88756 1.06743 1.21685 0.94833 0.86946 1.01348 1.62346 1.11727 1.01955 1.49171 1.23172 0.94989 1.01000 0.93770 1.23041 0.90799 0.82674 1.04528 1.88030 1.38617 1.50720 1.53334 1.21407 0.87836 0.90087 0.95796 0.85303 1.22916 0.79626 0.84064 0.79796 1.90740 1.71356 1.51866 1.28504 1.84450 1.40363 1.54148 1.52501 1.22621 0.95692 0.89463 1.01885 0.91069 0.91765 0.88222 0.98633 0.95921 0.92429 0.85746 0.86196 0.95557 0.90811 0.86134 0.94453 0.85529 0.89917 0.70199 0.94577 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 10.24 127.77 1.31 3.39 16 2 N -0.61 -24.95 2.86 -851.12 -2.43 -27.38 16 3 C 0.26 13.79 5.16 85.63 0.44 14.23 16 4 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.00 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 8 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.49 19.47 7.67 87.66 0.67 20.14 16 13 O -0.60 -30.54 15.56 -3.02 -0.05 -30.59 16 14 C -0.12 -2.95 3.52 29.85 0.11 -2.85 16 15 C 0.08 2.00 4.57 86.30 0.39 2.40 16 16 N -0.53 -9.97 4.88 -895.17 -4.37 -14.34 16 17 C 0.00 -0.03 4.94 86.31 0.43 0.40 16 18 C 0.07 0.84 7.01 72.01 0.50 1.35 16 19 O -0.39 -7.76 10.01 -129.97 -1.30 -9.07 16 20 C 0.11 1.86 3.33 29.88 0.10 1.96 16 21 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 22 C 0.49 9.31 7.66 71.24 0.55 9.86 16 23 O -0.54 -14.26 17.27 28.38 0.49 -13.77 16 24 O -0.50 -6.02 13.42 -51.37 -0.69 -6.71 16 25 C 0.03 0.60 4.89 86.32 0.42 1.02 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.10 1.87 6.44 -2.38 -0.02 1.86 16 29 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 30 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 32 H 0.12 2.43 7.40 -2.39 -0.02 2.42 16 33 H 0.12 2.15 6.24 -2.39 -0.01 2.14 16 34 H 0.03 0.76 8.04 -2.39 -0.02 0.74 16 35 H 0.07 2.11 8.10 -2.38 -0.02 2.09 16 36 H 0.12 1.27 6.05 -2.39 -0.01 1.26 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.43 1.50 9.10 -74.06 -0.67 0.83 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -83.73 350.01 -0.05 -83.78 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.36 Total: 5.58 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.62 Total: 21.92 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -6.51 Total: -97.83 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -1.55 Total: -60.13 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -83.73 -0.05 -83.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820579811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.002 kcal (2) G-P(sol) polarization free energy of solvation -83.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds