Wall clock time and date at job start Tue Mar 31 2020 04:01:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46507 * 109.46927 * 2 1
4 4 C 1.46497 * 119.99591 * 269.99535 * 3 2 1
5 5 C 1.50698 * 109.47371 * 269.99921 * 4 3 2
6 6 H 1.08000 * 119.99941 * 0.02562 * 5 4 3
7 7 C 1.37874 * 120.00223 * 180.02562 * 5 4 3
8 8 N 1.31517 * 119.99659 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00363 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.46757 * 0.02562 * 9 7 5
11 11 H 1.48503 * 109.47323 * 120.00032 * 9 7 5
12 12 H 1.48491 * 109.47481 * 240.00223 * 9 7 5
13 13 C 1.34778 * 120.00077 * 89.99962 * 3 2 1
14 14 O 1.21270 * 119.99976 * 179.97438 * 13 3 2
15 15 C 1.50699 * 119.99913 * 359.72320 * 13 3 2
16 16 N 1.46900 * 109.47124 * 180.27371 * 15 13 3
17 17 C 1.47007 * 111.00365 * 287.30844 * 16 15 13
18 18 C 1.53096 * 109.26305 * 177.60571 * 17 16 15
19 19 O 1.43022 * 109.25596 * 56.84618 * 18 17 16
20 20 C 1.43011 * 113.73768 * 301.33428 * 19 18 17
21 21 C 1.47014 * 110.99907 * 163.66902 * 16 15 13
22 22 H 1.09007 * 109.50568 * 62.42203 * 21 16 15
23 23 C 1.50700 * 109.51040 * 302.33146 * 21 16 15
24 24 O 1.20822 * 119.99832 * 332.05517 * 23 21 16
25 25 O 1.34229 * 119.99859 * 152.05245 * 23 21 16
26 26 H 1.09002 * 109.47250 * 300.00468 * 1 2 3
27 27 H 1.09001 * 109.47089 * 60.00299 * 1 2 3
28 28 H 1.08999 * 109.46967 * 180.02562 * 1 2 3
29 29 H 1.08995 * 109.47549 * 239.99794 * 2 1 3
30 30 H 1.09001 * 109.47089 * 119.99701 * 2 1 3
31 31 H 1.08997 * 109.47510 * 30.00641 * 4 3 2
32 32 H 1.09003 * 109.46437 * 150.00372 * 4 3 2
33 33 H 0.97007 * 119.99546 * 179.97438 * 8 7 5
34 34 H 1.09000 * 109.47226 * 300.27721 * 15 13 3
35 35 H 1.09004 * 109.47373 * 60.27563 * 15 13 3
36 36 H 1.09005 * 109.50520 * 297.54594 * 17 16 15
37 37 H 1.09002 * 109.50242 * 57.66762 * 17 16 15
38 38 H 1.09000 * 109.50565 * 296.91744 * 18 17 16
39 39 H 1.08997 * 109.54303 * 176.80541 * 18 17 16
40 40 H 1.08997 * 109.50611 * 298.73108 * 20 19 18
41 41 H 1.08998 * 109.50421 * 178.60453 * 20 19 18
42 42 H 0.96698 * 116.99691 * 179.97438 * 25 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2625 2.0718 -1.2688
5 6 3.6858 1.8350 -1.7037
6 1 4.3427 1.2303 -1.0961
7 6 4.1495 2.3904 -2.8774
8 7 3.3497 3.1272 -3.6171
9 14 5.9135 2.0964 -3.4170
10 1 6.6005 1.2395 -2.4175
11 1 5.9206 1.4182 -4.7381
12 1 6.6216 3.3971 -3.5246
13 6 2.2429 2.0167 1.1672
14 8 2.6476 3.1599 1.1672
15 6 1.9858 1.3084 2.4723
16 7 2.2990 2.2102 3.5888
17 6 3.7513 2.3891 3.7303
18 6 4.0301 3.3798 4.8636
19 8 3.4236 2.9022 6.0676
20 6 2.0091 2.7172 5.9655
21 6 1.7099 1.7198 4.8433
22 1 2.1406 0.7500 5.0930
23 6 0.2184 1.5805 4.6783
24 8 -0.3706 2.2837 3.8919
25 8 -0.4556 0.6752 5.4048
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5138 -0.8899
30 1 1.8934 -0.5138 0.8900
31 1 1.5818 1.6877 -2.0284
32 1 2.0955 3.1410 -1.1384
33 1 3.6760 3.5183 -4.4427
34 1 0.9376 1.0143 2.5257
35 1 2.6158 0.4210 2.5344
36 1 4.2152 1.4304 3.9625
37 1 4.1626 2.7769 2.7983
38 1 3.6123 4.3533 4.6071
39 1 5.1062 3.4727 5.0102
40 1 1.5326 3.6715 5.7410
41 1 1.6237 2.3303 6.9088
42 1 -1.4109 0.6229 5.2645
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000829692244.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:01:54
Heat of formation + Delta-G solvation = -149.002570 kcal
Electronic energy + Delta-G solvation = -26015.839499 eV
Core-core repulsion = 22189.884288 eV
Total energy + Delta-G solvation = -3825.955211 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.01176 -39.40680 -38.68111 -36.42130 -35.65821 -35.02478 -32.80061 -31.78643
-30.11631 -29.54833 -27.15692 -25.48695 -24.98007 -23.01652 -22.42472 -22.28892
-20.25602 -18.43565 -18.35314 -17.31999 -16.83601 -16.49877 -16.28003 -16.19667
-15.47873 -15.39465 -15.24077 -14.52589 -14.36116 -14.20387 -13.93669 -13.57894
-13.33516 -12.99033 -12.88906 -12.58760 -12.18722 -11.98885 -11.81931 -11.69517
-11.60424 -11.31128 -11.15364 -10.91691 -10.88766 -10.70533 -10.60432 -10.51582
-10.12012 -9.94450 -9.60710 -8.97177 -8.43360 -8.36726 -7.63038 -6.03672
-4.08541 1.92790 2.56639 3.29112 3.31981 3.36381 3.39386 3.46732
3.71458 4.11250 4.43637 4.45442 4.72328 4.76944 4.90911 5.08228
5.14289 5.16385 5.24358 5.30936 5.33768 5.40832 5.44125 5.53416
5.64462 5.78262 5.84317 5.89799 6.01392 6.22700 6.23567 6.48091
6.60977 6.72006 6.90423 7.11367 7.48188 7.57682 7.69074 7.93106
8.24616 8.45009 8.91656 9.14358 9.56640 11.04358
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.017887 B = 0.004497 C = 0.003831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1565.017541 B = 6225.412289 C = 7307.717071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.107 3.893
3 N -0.599 5.599
4 C 0.248 3.752
5 C -0.525 4.525
6 H 0.056 0.944
7 C 0.061 3.939
8 N -0.894 5.894
9 Si 0.897 3.103
10 H -0.274 1.274
11 H -0.284 1.284
12 H -0.283 1.283
13 C 0.513 3.487
14 O -0.521 6.521
15 C 0.031 3.969
16 N -0.499 5.499
17 C 0.021 3.979
18 C 0.061 3.939
19 O -0.377 6.377
20 C 0.080 3.920
21 C 0.058 3.942
22 H 0.083 0.917
23 C 0.478 3.522
24 O -0.479 6.479
25 O -0.518 6.518
26 H 0.049 0.951
27 H 0.062 0.938
28 H 0.059 0.941
29 H 0.083 0.917
30 H 0.059 0.941
31 H 0.031 0.969
32 H 0.044 0.956
33 H 0.262 0.738
34 H 0.096 0.904
35 H 0.062 0.938
36 H 0.043 0.957
37 H 0.114 0.886
38 H 0.069 0.931
39 H 0.105 0.895
40 H 0.070 0.930
41 H 0.107 0.893
42 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.288 -7.531 18.612 20.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.018 4.018
3 N -0.332 5.332
4 C 0.129 3.871
5 C -0.564 4.564
6 H 0.075 0.925
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.725 3.275
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.209 1.209
13 C 0.298 3.702
14 O -0.396 6.396
15 C -0.100 4.100
16 N -0.226 5.226
17 C -0.106 4.106
18 C -0.015 4.015
19 O -0.296 6.296
20 C 0.002 3.998
21 C -0.052 4.052
22 H 0.101 0.899
23 C 0.317 3.683
24 O -0.363 6.363
25 O -0.331 6.331
26 H 0.068 0.932
27 H 0.081 0.919
28 H 0.078 0.922
29 H 0.102 0.898
30 H 0.078 0.922
31 H 0.049 0.951
32 H 0.062 0.938
33 H 0.072 0.928
34 H 0.114 0.886
35 H 0.079 0.921
36 H 0.062 0.938
37 H 0.132 0.868
38 H 0.087 0.913
39 H 0.123 0.877
40 H 0.088 0.912
41 H 0.125 0.875
42 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges -4.919 -6.147 18.314 19.935
hybrid contribution 0.366 -1.122 -0.748 1.397
sum -4.553 -7.269 17.566 19.548
Atomic orbital electron populations
1.22229 0.96817 1.01279 1.02489 1.21401 0.93535 0.84383 1.02437
1.48239 1.64164 1.13164 1.07647 1.19259 0.96182 0.93710 0.77986
1.21457 0.96908 1.31760 1.06228 0.92529 1.24936 0.97797 0.94958
0.96419 1.69951 1.35563 1.33426 1.14353 0.86455 0.84693 0.78024
0.78295 1.19877 1.21002 1.20873 1.19846 0.78959 0.86996 0.84351
1.90647 1.44864 1.17406 1.86704 1.22222 1.02435 0.94091 0.91227
1.61629 1.12603 1.47725 1.00632 1.22980 0.86071 0.99335 1.02168
1.22799 0.98695 0.97041 0.82998 1.88007 1.19608 1.86758 1.35180
1.22498 0.83293 0.97718 0.96262 1.21932 0.88261 1.00960 0.94079
0.89947 1.23037 0.90637 0.76998 0.77642 1.90813 1.69716 1.42093
1.33662 1.84520 1.27819 1.57114 1.63641 0.93167 0.91860 0.92245
0.89823 0.92229 0.95067 0.93830 0.92787 0.88640 0.92055 0.93848
0.86803 0.91300 0.87729 0.91192 0.87480 0.72899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16
2 C 0.11 1.75 5.93 -4.04 -0.02 1.72 16
3 N -0.60 -12.88 2.46 -175.06 -0.43 -13.31 16
4 C 0.25 6.55 5.16 -5.20 -0.03 6.52 16
5 C -0.52 -14.83 9.39 -34.44 -0.32 -15.16 16
6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16
7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16
9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16
10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
13 C 0.51 10.95 7.40 -10.99 -0.08 10.87 16
14 O -0.52 -13.22 14.46 5.57 0.08 -13.14 16
15 C 0.03 0.50 3.68 -4.98 -0.02 0.48 16
16 N -0.50 -7.61 3.89 -229.16 -0.89 -8.50 16
17 C 0.02 0.30 5.31 -3.72 -0.02 0.28 16
18 C 0.06 0.74 7.01 37.21 0.26 1.00 16
19 O -0.38 -4.49 10.83 -35.23 -0.38 -4.87 16
20 C 0.08 0.85 6.27 37.21 0.23 1.08 16
21 C 0.06 0.69 2.49 -68.75 -0.17 0.51 16
22 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
23 C 0.48 5.64 6.23 36.01 0.22 5.87 16
24 O -0.48 -7.54 16.35 -18.75 -0.31 -7.85 16
25 O -0.52 -4.20 13.42 -39.25 -0.53 -4.73 16
26 H 0.05 0.72 7.20 -51.93 -0.37 0.35 16
27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16
30 H 0.06 0.81 6.45 -51.93 -0.33 0.48 16
31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16
32 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16
33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
34 H 0.10 1.46 4.98 -51.93 -0.26 1.20 16
35 H 0.06 0.85 7.31 -51.93 -0.38 0.48 16
36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
37 H 0.11 1.94 6.46 -51.93 -0.34 1.61 16
38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16
40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16
42 H 0.41 1.66 9.10 45.56 0.41 2.07 16
LS Contribution 346.42 15.07 5.22 5.22
Total: -1.00 -35.93 346.42 -6.60 -42.53
By element:
Atomic # 1 Polarization: 6.44 SS G_CDS: -5.42 Total: 1.02 kcal
Atomic # 6 Polarization: 12.46 SS G_CDS: 0.34 Total: 12.80 kcal
Atomic # 7 Polarization: -47.17 SS G_CDS: -0.58 Total: -47.76 kcal
Atomic # 8 Polarization: -29.45 SS G_CDS: -1.13 Total: -30.58 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -35.93 -6.60 -42.53 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829692244.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.470 kcal
(2) G-P(sol) polarization free energy of solvation -35.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.403 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.003 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds