Wall clock time and date at job start Tue Mar 31 2020 03:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 C 1.53001 * 109.47145 * 119.99786 * 2 1 3 5 5 C 1.52996 * 109.47327 * 300.00139 * 4 2 1 6 6 C 1.50695 * 109.47349 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99679 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.47022 * 125.65138 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.27482 * 178.98361 * 9 8 6 11 11 C 1.55157 * 102.93912 * 337.80443 * 10 9 8 12 12 O 1.42900 * 111.00520 * 277.38901 * 11 10 9 13 13 C 1.50702 * 111.00344 * 153.57728 * 11 10 9 14 14 H 1.08002 * 120.00299 * 241.45696 * 13 11 10 15 15 C 1.37884 * 119.99942 * 61.17254 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47424 * 125.64952 * 180.02562 * 8 6 5 22 22 N 1.46494 * 109.46982 * 240.00225 * 2 1 3 23 23 O 1.21799 * 120.00426 * 29.99572 * 22 2 1 24 24 O 1.21801 * 119.99654 * 209.99889 * 22 2 1 25 25 H 1.09006 * 109.47422 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.47524 * 60.00216 * 1 2 3 27 27 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46679 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46880 * 300.00177 * 3 2 1 30 30 H 1.08994 * 109.47053 * 60.00242 * 3 2 1 31 31 H 1.08999 * 109.46836 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.46799 * 60.00344 * 4 2 1 33 33 H 1.09005 * 109.47314 * 59.99520 * 5 4 2 34 34 H 1.09003 * 109.47348 * 299.99869 * 5 4 2 35 35 H 1.09003 * 109.88076 * 59.56192 * 9 8 6 36 36 H 1.09001 * 110.00358 * 298.47568 * 9 8 6 37 37 H 1.08995 * 110.71729 * 219.44160 * 10 9 8 38 38 H 1.08996 * 110.71909 * 96.16437 * 10 9 8 39 39 H 0.96704 * 113.99783 * 295.41666 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 1.09007 * 110.36818 * 85.24741 * 21 8 6 42 42 H 1.09006 * 110.37032 * 322.92419 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0318 -0.7107 3.7289 7 8 2.7292 -1.6967 3.6176 8 7 1.7066 -0.2500 4.9530 9 6 0.8744 0.9296 5.2314 10 6 0.7542 1.0541 6.7649 11 6 1.0554 -0.3869 7.2551 12 8 -0.1111 -1.2086 7.1776 13 6 1.6126 -0.3757 8.6553 14 1 2.6033 -0.7616 8.8454 15 6 0.8600 0.1326 9.6928 16 7 -0.3463 0.6026 9.4613 17 14 1.5537 0.1535 11.4270 18 1 2.9203 -0.4273 11.4205 19 1 1.6135 1.5533 11.9194 20 1 0.6789 -0.6482 12.3199 21 6 2.1272 -0.8448 6.2347 22 7 2.0183 -0.6905 -1.1962 23 8 1.3600 -0.6732 -2.2208 24 8 3.0826 -1.2821 -1.1660 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.4400 0.0001 2.4985 34 1 1.8934 1.0277 2.4985 35 1 -0.1142 0.7980 4.7916 36 1 1.3458 1.8234 4.8227 37 1 -0.2538 1.3555 7.0495 38 1 1.4920 1.7558 7.1538 39 1 -0.8282 -0.9299 7.7634 40 1 -0.8759 0.9599 10.1912 41 1 3.1096 -0.4703 6.5225 42 1 2.1413 -1.9323 6.1618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:43 Heat of formation + Delta-G solvation = -103.782362 kcal Electronic energy + Delta-G solvation = -25281.416321 eV Core-core repulsion = 21457.422006 eV Total energy + Delta-G solvation = -3823.994316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.54856 -39.78027 -37.82949 -36.88474 -36.59396 -34.41967 -32.31814 -31.44739 -29.77905 -28.42725 -28.22888 -27.26089 -25.75250 -24.23798 -22.35838 -20.89431 -19.82395 -18.89101 -18.73897 -18.02763 -17.60188 -17.27683 -16.55576 -15.99171 -15.16572 -15.04588 -14.74113 -14.65401 -14.16429 -13.87845 -13.55991 -13.30892 -13.11550 -12.64168 -12.56679 -12.26202 -12.16330 -12.04258 -11.83688 -11.64346 -11.53983 -11.45271 -11.39992 -11.24363 -11.13499 -11.03319 -10.99361 -10.71653 -10.53598 -10.14604 -9.60475 -9.45346 -8.78599 -8.33420 -8.14703 -6.38276 -4.46602 0.46046 1.49504 2.87473 3.12333 3.21748 3.24279 3.29673 3.74526 3.80722 4.00592 4.19176 4.61990 4.68466 4.76358 4.85184 4.87842 4.92796 5.01729 5.07713 5.21159 5.33733 5.40681 5.45760 5.56118 5.63901 5.71281 5.81117 5.87576 6.14538 6.23218 6.31592 6.52633 6.76332 6.82894 7.18913 7.23485 7.51740 7.63839 7.89882 7.97763 8.45119 8.57140 9.20496 9.29316 10.68923 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.039523 B = 0.002940 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.286251 B = 9521.456882 C = 9752.447745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.041 3.959 3 C -0.157 4.157 4 C -0.103 4.103 5 C -0.134 4.134 6 C 0.522 3.478 7 O -0.551 6.551 8 N -0.605 5.605 9 C 0.097 3.903 10 C -0.136 4.136 11 C 0.247 3.753 12 O -0.583 6.583 13 C -0.536 4.536 14 H 0.066 0.934 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.120 3.880 22 N -0.013 5.013 23 O -0.167 6.167 24 O -0.157 6.157 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.381 0.619 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 5.846 -14.148 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.037 4.037 3 C -0.214 4.214 4 C -0.141 4.141 5 C -0.174 4.174 6 C 0.310 3.690 7 O -0.430 6.430 8 N -0.338 5.338 9 C -0.026 4.026 10 C -0.175 4.175 11 C 0.207 3.793 12 O -0.392 6.392 13 C -0.574 4.574 14 H 0.084 0.916 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.002 4.002 22 N 0.509 4.491 23 O -0.386 6.386 24 O -0.379 6.379 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.322 5.448 -13.990 15.017 hybrid contribution -0.058 0.401 1.192 1.259 sum -0.380 5.850 -12.798 14.077 Atomic orbital electron populations 1.22225 0.88956 1.05057 1.05337 1.23660 0.99118 0.96132 0.84811 1.22269 1.03315 0.90388 1.05463 1.21601 1.03994 0.99755 0.88785 1.21710 1.02926 1.00688 0.92125 1.19886 0.80973 0.84626 0.83524 1.90703 1.39231 1.26783 1.86305 1.48620 1.50086 1.29311 1.05745 1.22214 0.93605 0.86581 1.00158 1.23174 1.03496 1.01416 0.89378 1.19618 0.82804 0.85144 0.91744 1.86136 1.27656 1.57595 1.67802 1.21482 1.02617 1.41505 0.91844 0.91618 1.24996 0.94771 0.93609 0.99642 1.69720 1.09837 1.40942 1.32924 0.86355 0.79395 0.77791 0.83420 1.19539 1.20807 1.20723 1.22401 0.97995 0.98736 0.81059 1.45018 1.00386 0.99519 1.04134 1.94503 1.56369 1.65352 1.22357 1.94559 1.10194 1.41964 1.91145 0.88437 0.89519 0.90574 0.90158 0.90335 0.87837 0.88119 0.89335 0.88367 0.88436 0.92402 0.92839 0.89418 0.91299 0.76862 0.92225 0.90916 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 7.78 37.16 0.29 -0.88 16 2 C 0.04 0.38 1.01 -131.82 -0.13 0.25 16 3 C -0.16 -1.07 8.45 37.16 0.31 -0.76 16 4 C -0.10 -1.15 3.21 -26.73 -0.09 -1.24 16 5 C -0.13 -1.47 4.19 -27.89 -0.12 -1.58 16 6 C 0.52 8.79 7.85 -10.99 -0.09 8.71 16 7 O -0.55 -11.32 16.24 5.56 0.09 -11.23 16 8 N -0.61 -10.92 3.33 -170.52 -0.57 -11.49 16 9 C 0.10 1.55 6.49 -3.06 -0.02 1.53 16 10 C -0.14 -2.70 5.38 -24.90 -0.13 -2.83 16 11 C 0.25 5.64 0.88 -89.62 -0.08 5.57 16 12 O -0.58 -14.12 13.18 -35.23 -0.46 -14.59 16 13 C -0.54 -13.39 8.27 -34.44 -0.28 -13.67 16 14 H 0.07 1.65 7.79 -52.49 -0.41 1.24 16 15 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 16 N -0.90 -21.99 10.73 55.43 0.59 -21.39 16 17 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.12 2.54 6.08 -2.53 -0.02 2.52 16 22 N -0.01 -0.16 3.85 0.54 0.00 -0.15 16 23 O -0.17 -2.15 18.10 -29.46 -0.53 -2.69 16 24 O -0.16 -2.22 18.10 -29.46 -0.53 -2.76 16 25 H 0.10 0.55 6.43 -51.93 -0.33 0.21 16 26 H 0.09 0.58 7.79 -51.93 -0.40 0.18 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.51 6.43 -51.93 -0.33 0.18 16 31 H 0.10 1.25 7.75 -51.93 -0.40 0.85 16 32 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.10 0.91 6.43 -51.93 -0.33 0.57 16 34 H 0.10 0.82 6.43 -51.93 -0.33 0.49 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.83 7.54 -51.93 -0.39 1.44 16 38 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 39 H 0.38 9.23 7.51 45.56 0.34 9.57 16 40 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 41 H 0.07 1.50 8.03 -51.92 -0.42 1.09 16 42 H 0.07 1.63 8.04 -51.93 -0.42 1.21 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -29.15 344.56 -7.21 -36.35 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.52 Total: 8.97 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.45 Total: -0.70 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.03 Total: -33.03 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.44 Total: -31.26 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.15 -7.21 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.428 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds