Wall clock time and date at job start Tue Mar 31 2020 03:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 C 1.53001 * 109.47145 * 119.99786 * 2 1 3 5 5 C 1.52996 * 109.47327 * 300.00139 * 4 2 1 6 6 C 1.50695 * 109.47349 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99679 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.47022 * 125.65138 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.27482 * 178.98361 * 9 8 6 11 11 C 1.55157 * 102.93912 * 337.80443 * 10 9 8 12 12 O 1.42900 * 111.00520 * 277.38901 * 11 10 9 13 13 C 1.50702 * 111.00344 * 153.57728 * 11 10 9 14 14 H 1.08002 * 120.00299 * 241.45696 * 13 11 10 15 15 C 1.37884 * 119.99942 * 61.17254 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47424 * 125.64952 * 180.02562 * 8 6 5 22 22 N 1.46494 * 109.46982 * 240.00225 * 2 1 3 23 23 O 1.21799 * 120.00426 * 29.99572 * 22 2 1 24 24 O 1.21801 * 119.99654 * 209.99889 * 22 2 1 25 25 H 1.09006 * 109.47422 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.47524 * 60.00216 * 1 2 3 27 27 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46679 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46880 * 300.00177 * 3 2 1 30 30 H 1.08994 * 109.47053 * 60.00242 * 3 2 1 31 31 H 1.08999 * 109.46836 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.46799 * 60.00344 * 4 2 1 33 33 H 1.09005 * 109.47314 * 59.99520 * 5 4 2 34 34 H 1.09003 * 109.47348 * 299.99869 * 5 4 2 35 35 H 1.09003 * 109.88076 * 59.56192 * 9 8 6 36 36 H 1.09001 * 110.00358 * 298.47568 * 9 8 6 37 37 H 1.08995 * 110.71729 * 219.44160 * 10 9 8 38 38 H 1.08996 * 110.71909 * 96.16437 * 10 9 8 39 39 H 0.96704 * 113.99783 * 295.41666 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 1.09007 * 110.36818 * 85.24741 * 21 8 6 42 42 H 1.09006 * 110.37032 * 322.92419 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0318 -0.7107 3.7289 7 8 2.7292 -1.6967 3.6176 8 7 1.7066 -0.2500 4.9530 9 6 0.8744 0.9296 5.2314 10 6 0.7542 1.0541 6.7649 11 6 1.0554 -0.3869 7.2551 12 8 -0.1111 -1.2086 7.1776 13 6 1.6126 -0.3757 8.6553 14 1 2.6033 -0.7616 8.8454 15 6 0.8600 0.1326 9.6928 16 7 -0.3463 0.6026 9.4613 17 14 1.5537 0.1535 11.4270 18 1 2.9203 -0.4273 11.4205 19 1 1.6135 1.5533 11.9194 20 1 0.6789 -0.6482 12.3199 21 6 2.1272 -0.8448 6.2347 22 7 2.0183 -0.6905 -1.1962 23 8 1.3600 -0.6732 -2.2208 24 8 3.0826 -1.2821 -1.1660 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.4400 0.0001 2.4985 34 1 1.8934 1.0277 2.4985 35 1 -0.1142 0.7980 4.7916 36 1 1.3458 1.8234 4.8227 37 1 -0.2538 1.3555 7.0495 38 1 1.4920 1.7558 7.1538 39 1 -0.8282 -0.9299 7.7634 40 1 -0.8759 0.9599 10.1912 41 1 3.1096 -0.4703 6.5225 42 1 2.1413 -1.9323 6.1618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:42 Heat of formation + Delta-G solvation = -123.459338 kcal Electronic energy + Delta-G solvation = -25282.269579 eV Core-core repulsion = 21457.422006 eV Total energy + Delta-G solvation = -3824.847573 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44433 -41.15650 -39.21131 -37.94577 -37.55465 -36.09231 -34.22127 -32.53021 -31.23275 -29.97918 -28.74931 -28.06604 -27.33110 -25.51503 -23.73059 -21.91567 -21.44612 -20.14041 -19.66984 -19.20194 -18.88171 -18.46159 -17.77113 -17.16662 -16.93254 -16.57509 -15.99495 -15.80489 -15.36300 -14.99736 -14.74598 -14.30964 -14.06861 -13.92973 -13.69685 -13.57265 -13.31613 -13.20077 -13.11623 -13.03839 -12.65525 -12.64602 -12.54961 -12.46814 -12.35045 -12.27021 -12.17620 -12.10833 -11.95550 -11.82590 -11.27530 -10.96981 -10.65038 -10.15200 -9.58951 -8.25574 -6.40003 -0.55470 0.68051 1.39506 1.45029 1.53834 1.58702 2.00053 2.39166 2.91683 3.00209 3.14969 3.27975 3.61810 3.73597 3.88545 3.91241 4.04146 4.24964 4.34225 4.39484 4.40316 4.43472 4.49778 4.57941 4.58917 4.64868 4.73370 4.85248 4.89969 4.95203 5.03014 5.18800 5.26642 5.30216 5.46660 5.57168 5.77581 6.07297 6.48094 6.60278 6.65291 7.11647 7.30552 7.39318 8.79908 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.039523 B = 0.002940 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.286251 B = 9521.456882 C = 9752.447745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.046 3.954 3 C -0.157 4.157 4 C -0.098 4.098 5 C -0.119 4.119 6 C 0.514 3.486 7 O -0.598 6.598 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.128 4.128 11 C 0.233 3.767 12 O -0.593 6.593 13 C -0.563 4.563 14 H 0.051 0.949 15 C 0.040 3.960 16 N -0.903 5.903 17 Si 0.956 3.044 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.281 1.281 21 C 0.124 3.876 22 N -0.010 5.010 23 O -0.156 6.156 24 O -0.211 6.211 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 8.499 -14.963 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.032 4.032 3 C -0.214 4.214 4 C -0.137 4.137 5 C -0.158 4.158 6 C 0.305 3.695 7 O -0.480 6.480 8 N -0.341 5.341 9 C -0.018 4.018 10 C -0.166 4.166 11 C 0.193 3.807 12 O -0.402 6.402 13 C -0.601 4.601 14 H 0.069 0.931 15 C -0.162 4.162 16 N -0.542 5.542 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.207 1.207 21 C 0.001 3.999 22 N 0.508 4.492 23 O -0.383 6.383 24 O -0.422 6.422 25 H 0.144 0.856 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.228 0.772 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.587 8.093 -14.783 16.927 hybrid contribution 0.298 -0.456 1.449 1.548 sum -1.289 7.636 -13.334 15.420 Atomic orbital electron populations 1.22360 0.86943 1.05023 1.07353 1.23883 1.00391 0.96689 0.82211 1.22417 1.03032 0.88367 1.07588 1.21458 1.02864 0.99021 0.90315 1.21752 1.04487 1.01465 0.88112 1.20966 0.79918 0.84161 0.84459 1.90689 1.41326 1.29093 1.86939 1.48695 1.50523 1.29875 1.05022 1.22306 0.95046 0.87204 0.97280 1.22943 1.02449 0.98732 0.92495 1.19786 0.82548 0.87056 0.91356 1.86123 1.27975 1.58477 1.67621 1.21696 1.02427 1.42301 0.93711 0.93107 1.25544 0.95133 0.93304 1.02248 1.69768 1.10092 1.40651 1.33691 0.85539 0.78374 0.77926 0.79932 1.20135 1.19943 1.20719 1.22109 0.97705 0.97113 0.83006 1.45560 0.99846 0.98959 1.04807 1.94470 1.55862 1.64497 1.23422 1.94574 1.11648 1.44286 1.91674 0.85567 0.88341 0.91691 0.90884 0.89120 0.84741 0.90070 0.91818 0.85348 0.84462 0.90050 0.88389 0.90511 0.92023 0.77249 0.91940 0.91159 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.78 71.98 0.56 -1.18 16 2 C 0.05 0.73 1.01 3.61 0.00 0.73 16 3 C -0.16 -1.51 8.45 71.98 0.61 -0.90 16 4 C -0.10 -2.05 3.21 30.59 0.10 -1.95 16 5 C -0.12 -2.14 4.19 29.85 0.12 -2.02 16 6 C 0.51 16.53 7.85 87.66 0.69 17.22 16 7 O -0.60 -25.01 16.24 -3.03 -0.05 -25.06 16 8 N -0.61 -20.94 3.33 -811.78 -2.70 -23.64 16 9 C 0.10 2.89 6.49 86.73 0.56 3.46 16 10 C -0.13 -4.86 5.38 31.78 0.17 -4.69 16 11 C 0.23 10.67 0.88 -10.15 -0.01 10.66 16 12 O -0.59 -29.00 13.18 -148.98 -1.96 -30.96 16 13 C -0.56 -28.58 8.27 25.60 0.21 -28.37 16 14 H 0.05 2.64 7.79 -2.91 -0.02 2.62 16 15 C 0.04 1.94 5.27 84.66 0.45 2.39 16 16 N -0.90 -43.93 10.73 21.45 0.23 -43.70 16 17 Si 0.96 39.90 29.54 68.60 2.03 41.92 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 C 0.12 5.34 6.08 86.86 0.53 5.87 16 22 N -0.01 -0.24 3.85 -152.21 -0.59 -0.82 16 23 O -0.16 -3.80 18.10 18.89 0.34 -3.46 16 24 O -0.21 -6.15 18.10 18.89 0.34 -5.81 16 25 H 0.13 0.67 6.43 -2.38 -0.02 0.65 16 26 H 0.10 0.90 7.79 -2.39 -0.02 0.89 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.13 0.48 6.43 -2.39 -0.02 0.46 16 31 H 0.08 2.03 7.75 -2.39 -0.02 2.01 16 32 H 0.06 1.64 8.10 -2.39 -0.02 1.63 16 33 H 0.13 1.64 6.43 -2.38 -0.02 1.63 16 34 H 0.14 1.46 6.43 -2.39 -0.02 1.45 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 3.08 7.54 -2.39 -0.02 3.07 16 38 H 0.06 2.40 8.03 -2.39 -0.02 2.38 16 39 H 0.38 18.48 7.51 -74.05 -0.56 17.92 16 40 H 0.27 12.55 8.31 -92.70 -0.77 11.78 16 41 H 0.07 2.99 8.03 -2.38 -0.02 2.98 16 42 H 0.04 1.98 8.04 -2.38 -0.02 1.96 16 Total: -1.00 -67.03 344.56 2.12 -64.92 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.48 Total: 25.41 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 3.99 Total: 1.21 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -3.06 Total: -68.16 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -1.33 Total: -65.29 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Total: -67.03 2.12 -64.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.543 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds