Wall clock time and date at job start Tue Mar 31 2020 04:23:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86799 * 120.00087 * 2 1
4 4 H 1.48504 * 109.47084 * 239.99958 * 3 2 1
5 5 H 1.48496 * 109.47415 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47293 * 119.99900 * 3 2 1
7 7 C 1.37872 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00206 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1
10 10 N 1.46506 * 109.47192 * 180.02562 * 9 7 2
11 11 C 1.34769 * 120.00244 * 180.02562 * 10 9 7
12 12 O 1.21284 * 120.00181 * 359.97438 * 11 10 9
13 13 C 1.50701 * 120.00045 * 179.97438 * 11 10 9
14 14 N 1.46906 * 109.47139 * 186.69578 * 13 11 10
15 15 C 1.46893 * 110.99944 * 210.49122 * 14 13 11
16 16 C 1.53005 * 109.47070 * 161.12006 * 15 14 13
17 17 O 1.42895 * 109.46951 * 61.02476 * 16 15 14
18 18 C 1.42903 * 114.00277 * 179.97438 * 17 16 15
19 19 C 1.52992 * 109.47372 * 180.02562 * 18 17 16
20 20 O 1.42903 * 109.47393 * 65.00280 * 19 18 17
21 21 C 1.46900 * 110.99764 * 86.53465 * 14 13 11
22 22 C 1.53786 * 113.61073 * 49.99592 * 21 14 13
23 23 C 1.53966 * 87.01566 * 220.04410 * 22 21 14
24 24 C 1.53777 * 87.11023 * 25.36177 * 23 22 21
25 25 H 0.97001 * 119.99688 * 0.02562 * 1 2 3
26 26 H 1.08998 * 109.47070 * 60.00176 * 9 7 2
27 27 H 1.09002 * 109.47310 * 299.99822 * 9 7 2
28 28 H 0.97001 * 119.99449 * 359.97438 * 10 9 7
29 29 H 1.09001 * 109.46977 * 306.69784 * 13 11 10
30 30 H 1.09003 * 109.47120 * 66.69954 * 13 11 10
31 31 H 1.09000 * 109.47718 * 281.11885 * 15 14 13
32 32 H 1.09006 * 109.47302 * 41.12326 * 15 14 13
33 33 H 1.08996 * 109.47126 * 181.02700 * 16 15 14
34 34 H 1.09001 * 109.47008 * 301.02820 * 16 15 14
35 35 H 1.09000 * 109.47179 * 300.00567 * 18 17 16
36 36 H 1.09003 * 109.46687 * 59.99651 * 18 17 16
37 37 H 1.09003 * 109.47259 * 184.99747 * 19 18 17
38 38 H 1.08998 * 109.47262 * 305.00113 * 19 18 17
39 39 H 0.96696 * 113.99930 * 180.02562 * 20 19 18
40 40 H 1.09003 * 112.84786 * 181.18426 * 21 14 13
41 41 H 1.09001 * 113.61500 * 334.55940 * 22 21 14
42 42 H 1.09000 * 113.61654 * 105.46780 * 22 21 14
43 43 H 1.09000 * 113.53518 * 270.81218 * 23 22 21
44 44 H 1.09001 * 113.66301 * 139.92997 * 23 22 21
45 45 H 1.09003 * 113.61537 * 220.09007 * 24 23 22
46 46 H 1.09001 * 113.69218 * 89.20004 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6964 -1.2125
5 1 1.2843 2.7465 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4991 0.0005
10 7 2.2029 -3.6127 0.0018
11 6 1.7537 -4.8833 0.0015
12 8 0.5613 -5.1050 0.0006
13 6 2.7330 -6.0288 0.0022
14 7 2.0057 -7.2949 -0.1598
15 6 2.7043 -8.3939 0.5198
16 6 1.7333 -9.5552 0.7423
17 8 1.2584 -10.0274 -0.5200
18 6 0.3403 -11.1183 -0.4246
19 6 -0.0990 -11.5396 -1.8282
20 8 1.0253 -12.0535 -2.5451
21 6 1.7958 -7.6032 -1.5807
22 6 3.0754 -7.5047 -2.4280
23 6 2.2051 -6.8586 -3.5215
24 6 1.2559 -6.4161 -2.3955
25 1 -0.4850 0.8401 -0.0004
26 1 0.6247 -2.5570 -0.8897
27 1 0.6239 -2.5567 0.8903
28 1 3.1566 -3.4354 0.0021
29 1 3.4364 -5.9058 -0.8214
30 1 3.2774 -6.0408 0.9464
31 1 3.5382 -8.7305 -0.0961
32 1 3.0805 -8.0455 1.4818
33 1 2.2468 -10.3635 1.2628
34 1 0.8902 -9.2139 1.3430
35 1 0.8252 -11.9590 0.0717
36 1 -0.5317 -10.8099 0.1523
37 1 -0.8653 -12.3112 -1.7529
38 1 -0.5032 -10.6764 -2.3568
39 1 0.8201 -12.3402 -3.4455
40 1 1.2398 -8.5280 -1.7354
41 1 3.8242 -6.8311 -2.0112
42 1 3.4869 -8.4733 -2.7117
43 1 1.7620 -7.5801 -4.2079
44 1 2.6914 -6.0285 -4.0340
45 1 0.2006 -6.5072 -2.6530
46 1 1.5051 -5.4445 -1.9691
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000852292468.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:23:06
Heat of formation + Delta-G solvation = -94.146703 kcal
Electronic energy + Delta-G solvation = -25552.512738 eV
Core-core repulsion = 21864.769350 eV
Total energy + Delta-G solvation = -3687.743388 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 300.188 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.17998 -38.38995 -37.76000 -36.60981 -34.67291 -33.99063 -32.24128 -30.69674
-28.96434 -27.63022 -26.06709 -25.40305 -23.88089 -22.68587 -22.38212 -21.35480
-19.66670 -18.71447 -17.90698 -17.03713 -16.98340 -16.59786 -16.05087 -15.63188
-15.15586 -14.94139 -14.78376 -14.53215 -14.32245 -13.97181 -13.77765 -13.41737
-12.90593 -12.73560 -12.48052 -12.25482 -12.03892 -11.92199 -11.80570 -11.64451
-11.31956 -11.14137 -10.99820 -10.95331 -10.78798 -10.57851 -10.33111 -10.26972
-10.24750 -9.99294 -9.52289 -9.35606 -8.87019 -8.67285 -7.91387 -7.75471
-6.12433 -4.19041 3.27373 3.32087 3.33543 3.51918 3.54554 3.74936
3.98552 4.32261 4.56448 4.80779 4.85653 4.91509 4.93353 5.00840
5.09512 5.11919 5.19372 5.23407 5.26118 5.32815 5.34551 5.46539
5.52096 5.57362 5.58937 5.73439 5.84138 5.94456 5.99843 6.09544
6.18397 6.31139 6.49369 6.74445 7.06698 7.21592 7.32808 7.35661
7.41262 7.56216 7.59564 7.75426 8.03061 8.73787 8.87084 9.26784
9.48441 10.97731
Molecular weight = 300.19amu
Principal moments of inertia in cm(-1)
A = 0.027994 B = 0.002931 C = 0.002876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.981136 B = 9551.156211 C = 9733.637231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.063 3.937
3 Si 0.903 3.097
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.276 1.276
7 C -0.542 4.542
8 H 0.061 0.939
9 C 0.254 3.746
10 N -0.721 5.721
11 C 0.499 3.501
12 O -0.530 6.530
13 C 0.022 3.978
14 N -0.504 5.504
15 C 0.059 3.941
16 C 0.068 3.932
17 O -0.371 6.371
18 C 0.060 3.940
19 C 0.077 3.923
20 O -0.567 6.567
21 C 0.075 3.925
22 C -0.181 4.181
23 C -0.142 4.142
24 C -0.134 4.134
25 H 0.266 0.734
26 H 0.025 0.975
27 H 0.025 0.975
28 H 0.387 0.613
29 H 0.070 0.930
30 H 0.091 0.909
31 H 0.044 0.956
32 H 0.085 0.915
33 H 0.049 0.951
34 H 0.059 0.941
35 H 0.051 0.949
36 H 0.064 0.936
37 H 0.057 0.943
38 H 0.056 0.944
39 H 0.377 0.623
40 H 0.130 0.870
41 H 0.079 0.921
42 H 0.064 0.936
43 H 0.075 0.925
44 H 0.064 0.936
45 H 0.066 0.934
46 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.047 -22.817 -2.989 23.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.140 4.140
3 Si 0.730 3.270
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.581 4.581
8 H 0.080 0.920
9 C 0.133 3.867
10 N -0.371 5.371
11 C 0.283 3.717
12 O -0.407 6.407
13 C -0.109 4.109
14 N -0.226 5.226
15 C -0.069 4.069
16 C -0.008 4.008
17 O -0.290 6.290
18 C -0.017 4.017
19 C -0.001 4.001
20 O -0.372 6.372
21 C -0.033 4.033
22 C -0.220 4.220
23 C -0.179 4.179
24 C -0.172 4.172
25 H 0.075 0.925
26 H 0.043 0.957
27 H 0.043 0.957
28 H 0.219 0.781
29 H 0.088 0.912
30 H 0.109 0.891
31 H 0.062 0.938
32 H 0.104 0.896
33 H 0.067 0.933
34 H 0.077 0.923
35 H 0.070 0.930
36 H 0.082 0.918
37 H 0.075 0.925
38 H 0.074 0.926
39 H 0.224 0.776
40 H 0.147 0.853
41 H 0.097 0.903
42 H 0.083 0.917
43 H 0.094 0.906
44 H 0.083 0.917
45 H 0.084 0.916
46 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 3.875 -22.558 -2.345 23.008
hybrid contribution 1.273 0.771 -0.585 1.598
sum 5.147 -21.788 -2.930 22.578
Atomic orbital electron populations
1.69970 1.06084 1.27312 1.48965 1.24947 0.94898 0.99380 0.94797
0.86496 0.79426 0.82445 0.78649 1.20111 1.21100 1.20102 1.21207
0.93189 0.90578 1.53087 0.92050 1.19024 0.88261 0.81904 0.97533
1.46481 1.10860 1.06183 1.73612 1.20278 0.89823 0.83861 0.77698
1.90672 1.16468 1.84522 1.49053 1.22244 0.95468 0.90588 1.02649
1.61531 1.47221 1.00318 1.13575 1.22156 0.94677 0.90869 0.99169
1.22550 0.97510 0.94870 0.85919 1.87963 1.62590 1.49479 1.28969
1.22500 0.93451 0.89846 0.95916 1.22207 0.88085 0.97384 0.92385
1.86555 1.35525 1.84714 1.30399 1.23577 0.95649 1.00010 0.84097
1.23634 0.98590 1.00749 0.99040 1.22742 0.98477 1.00253 0.96476
1.23238 0.99397 0.99307 0.95264 0.92453 0.95745 0.95740 0.78088
0.91196 0.89091 0.93784 0.89637 0.93300 0.92286 0.93030 0.91844
0.92453 0.92561 0.77635 0.85305 0.90301 0.91691 0.90606 0.91686
0.91554 0.89199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16
2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16
4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16
6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16
8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16
9 C 0.25 6.82 5.43 -5.19 -0.03 6.79 16
10 N -0.72 -15.40 5.55 -61.47 -0.34 -15.74 16
11 C 0.50 10.15 5.54 -10.99 -0.06 10.09 16
12 O -0.53 -12.99 15.08 5.55 0.08 -12.91 16
13 C 0.02 0.33 5.04 -4.97 -0.03 0.30 16
14 N -0.50 -7.52 4.03 -227.10 -0.91 -8.44 16
15 C 0.06 0.69 5.50 -3.83 -0.02 0.67 16
16 C 0.07 0.75 6.30 37.16 0.23 0.98 16
17 O -0.37 -4.49 7.15 -40.07 -0.29 -4.78 16
18 C 0.06 0.56 6.32 37.15 0.23 0.80 16
19 C 0.08 0.64 7.43 37.15 0.28 0.91 16
20 O -0.57 -5.29 13.63 -40.07 -0.55 -5.83 16
21 C 0.07 1.10 3.54 -66.90 -0.24 0.86 16
22 C -0.18 -2.33 6.78 -25.82 -0.17 -2.50 16
23 C -0.14 -1.89 8.09 -25.82 -0.21 -2.10 16
24 C -0.13 -2.22 6.47 -25.92 -0.17 -2.38 16
25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16
28 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16
29 H 0.07 0.96 5.08 -51.93 -0.26 0.69 16
30 H 0.09 1.16 7.41 -51.93 -0.38 0.78 16
31 H 0.04 0.49 7.47 -51.93 -0.39 0.11 16
32 H 0.09 0.85 7.53 -51.93 -0.39 0.46 16
33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.38 1.77 9.12 45.56 0.42 2.19 16
40 H 0.13 1.95 5.33 -51.93 -0.28 1.67 16
41 H 0.08 0.99 5.69 -51.93 -0.30 0.70 16
42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
46 H 0.09 1.73 4.48 -51.93 -0.23 1.50 16
LS Contribution 364.79 15.07 5.50 5.50
Total: -1.00 -34.64 364.79 -8.15 -42.79
By element:
Atomic # 1 Polarization: 14.91 SS G_CDS: -6.76 Total: 8.14 kcal
Atomic # 6 Polarization: 1.50 SS G_CDS: -0.60 Total: 0.90 kcal
Atomic # 7 Polarization: -49.33 SS G_CDS: -0.52 Total: -49.85 kcal
Atomic # 8 Polarization: -22.77 SS G_CDS: -0.75 Total: -23.52 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -34.64 -8.15 -42.79 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000852292468.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.355 kcal
(2) G-P(sol) polarization free energy of solvation -34.641 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.996 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.147 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds