Wall clock time and date at job start Tue Mar 31 2020 04:23:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86799 * 120.00087 * 2 1
4 4 H 1.48504 * 109.47084 * 239.99958 * 3 2 1
5 5 H 1.48496 * 109.47415 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47293 * 119.99900 * 3 2 1
7 7 C 1.37872 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00206 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1
10 10 N 1.46506 * 109.47192 * 180.02562 * 9 7 2
11 11 C 1.34769 * 120.00244 * 180.02562 * 10 9 7
12 12 O 1.21284 * 120.00181 * 359.97438 * 11 10 9
13 13 C 1.50701 * 120.00045 * 179.97438 * 11 10 9
14 14 N 1.46906 * 109.47139 * 186.69578 * 13 11 10
15 15 C 1.46893 * 110.99944 * 210.49122 * 14 13 11
16 16 C 1.53005 * 109.47070 * 161.12006 * 15 14 13
17 17 O 1.42895 * 109.46951 * 61.02476 * 16 15 14
18 18 C 1.42903 * 114.00277 * 179.97438 * 17 16 15
19 19 C 1.52992 * 109.47372 * 180.02562 * 18 17 16
20 20 O 1.42903 * 109.47393 * 65.00280 * 19 18 17
21 21 C 1.46900 * 110.99764 * 86.53465 * 14 13 11
22 22 C 1.53786 * 113.61073 * 49.99592 * 21 14 13
23 23 C 1.53966 * 87.01566 * 220.04410 * 22 21 14
24 24 C 1.53777 * 87.11023 * 25.36177 * 23 22 21
25 25 H 0.97001 * 119.99688 * 0.02562 * 1 2 3
26 26 H 1.08998 * 109.47070 * 60.00176 * 9 7 2
27 27 H 1.09002 * 109.47310 * 299.99822 * 9 7 2
28 28 H 0.97001 * 119.99449 * 359.97438 * 10 9 7
29 29 H 1.09001 * 109.46977 * 306.69784 * 13 11 10
30 30 H 1.09003 * 109.47120 * 66.69954 * 13 11 10
31 31 H 1.09000 * 109.47718 * 281.11885 * 15 14 13
32 32 H 1.09006 * 109.47302 * 41.12326 * 15 14 13
33 33 H 1.08996 * 109.47126 * 181.02700 * 16 15 14
34 34 H 1.09001 * 109.47008 * 301.02820 * 16 15 14
35 35 H 1.09000 * 109.47179 * 300.00567 * 18 17 16
36 36 H 1.09003 * 109.46687 * 59.99651 * 18 17 16
37 37 H 1.09003 * 109.47259 * 184.99747 * 19 18 17
38 38 H 1.08998 * 109.47262 * 305.00113 * 19 18 17
39 39 H 0.96696 * 113.99930 * 180.02562 * 20 19 18
40 40 H 1.09003 * 112.84786 * 181.18426 * 21 14 13
41 41 H 1.09001 * 113.61500 * 334.55940 * 22 21 14
42 42 H 1.09000 * 113.61654 * 105.46780 * 22 21 14
43 43 H 1.09000 * 113.53518 * 270.81218 * 23 22 21
44 44 H 1.09001 * 113.66301 * 139.92997 * 23 22 21
45 45 H 1.09003 * 113.61537 * 220.09007 * 24 23 22
46 46 H 1.09001 * 113.69218 * 89.20004 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6964 -1.2125
5 1 1.2843 2.7465 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4991 0.0005
10 7 2.2029 -3.6127 0.0018
11 6 1.7537 -4.8833 0.0015
12 8 0.5613 -5.1050 0.0006
13 6 2.7330 -6.0288 0.0022
14 7 2.0057 -7.2949 -0.1598
15 6 2.7043 -8.3939 0.5198
16 6 1.7333 -9.5552 0.7423
17 8 1.2584 -10.0274 -0.5200
18 6 0.3403 -11.1183 -0.4246
19 6 -0.0990 -11.5396 -1.8282
20 8 1.0253 -12.0535 -2.5451
21 6 1.7958 -7.6032 -1.5807
22 6 3.0754 -7.5047 -2.4280
23 6 2.2051 -6.8586 -3.5215
24 6 1.2559 -6.4161 -2.3955
25 1 -0.4850 0.8401 -0.0004
26 1 0.6247 -2.5570 -0.8897
27 1 0.6239 -2.5567 0.8903
28 1 3.1566 -3.4354 0.0021
29 1 3.4364 -5.9058 -0.8214
30 1 3.2774 -6.0408 0.9464
31 1 3.5382 -8.7305 -0.0961
32 1 3.0805 -8.0455 1.4818
33 1 2.2468 -10.3635 1.2628
34 1 0.8902 -9.2139 1.3430
35 1 0.8252 -11.9590 0.0717
36 1 -0.5317 -10.8099 0.1523
37 1 -0.8653 -12.3112 -1.7529
38 1 -0.5032 -10.6764 -2.3568
39 1 0.8201 -12.3402 -3.4455
40 1 1.2398 -8.5280 -1.7354
41 1 3.8242 -6.8311 -2.0112
42 1 3.4869 -8.4733 -2.7117
43 1 1.7620 -7.5801 -4.2079
44 1 2.6914 -6.0285 -4.0340
45 1 0.2006 -6.5072 -2.6530
46 1 1.5051 -5.4445 -1.9691
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000852292468.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:23:05
Heat of formation + Delta-G solvation = -122.848845 kcal
Electronic energy + Delta-G solvation = -25553.757356 eV
Core-core repulsion = 21864.769350 eV
Total energy + Delta-G solvation = -3688.988006 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 300.188 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.45630 -39.61268 -38.91028 -37.32613 -36.07187 -35.66166 -34.28168 -31.64698
-30.10919 -29.13408 -27.55677 -26.56803 -25.12862 -24.21931 -23.36350 -22.37654
-21.37178 -19.99238 -18.82214 -18.56133 -17.93865 -17.63662 -17.40039 -17.19391
-16.74429 -16.14683 -15.89486 -15.71196 -15.65756 -15.22220 -14.94515 -14.61149
-14.16997 -14.06281 -13.92294 -13.82571 -13.41895 -13.15869 -13.03365 -12.92682
-12.69556 -12.57939 -12.27752 -12.22718 -12.15764 -11.87902 -11.72219 -11.49569
-11.45112 -11.08274 -10.93831 -10.77185 -10.58922 -10.36014 -9.72558 -9.03424
-8.27732 -6.44481 1.42665 1.47071 1.55152 1.92259 2.29972 2.49227
2.77418 3.06690 3.16550 3.43211 3.73918 3.78591 3.97521 4.04209
4.07765 4.10647 4.20922 4.27743 4.32673 4.39112 4.41244 4.57105
4.60035 4.66349 4.75462 4.82658 4.84213 4.88142 4.97903 5.04952
5.07728 5.14239 5.16440 5.23748 5.27712 5.52349 5.60031 5.75476
5.88218 6.10432 6.24993 6.36851 6.67333 6.92110 7.05051 7.25554
7.64744 8.84296
Molecular weight = 300.19amu
Principal moments of inertia in cm(-1)
A = 0.027994 B = 0.002931 C = 0.002876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.981136 B = 9551.156211 C = 9733.637231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.003 3.997
3 Si 0.984 3.016
4 H -0.262 1.262
5 H -0.286 1.286
6 H -0.261 1.261
7 C -0.555 4.555
8 H 0.083 0.917
9 C 0.273 3.727
10 N -0.716 5.716
11 C 0.497 3.503
12 O -0.579 6.579
13 C 0.036 3.964
14 N -0.529 5.529
15 C 0.059 3.941
16 C 0.067 3.933
17 O -0.392 6.392
18 C 0.052 3.948
19 C 0.077 3.923
20 O -0.588 6.588
21 C 0.080 3.920
22 C -0.164 4.164
23 C -0.131 4.131
24 C -0.151 4.151
25 H 0.268 0.732
26 H -0.018 1.018
27 H -0.017 1.017
28 H 0.405 0.595
29 H 0.092 0.908
30 H 0.124 0.876
31 H 0.055 0.945
32 H 0.105 0.895
33 H 0.073 0.927
34 H 0.046 0.954
35 H 0.059 0.941
36 H 0.068 0.932
37 H 0.083 0.917
38 H 0.047 0.953
39 H 0.395 0.605
40 H 0.126 0.874
41 H 0.086 0.914
42 H 0.079 0.921
43 H 0.090 0.910
44 H 0.067 0.933
45 H 0.042 0.958
46 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.028 -23.761 -2.986 25.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.197 4.197
3 Si 0.807 3.193
4 H -0.187 1.187
5 H -0.211 1.211
6 H -0.186 1.186
7 C -0.593 4.593
8 H 0.101 0.899
9 C 0.150 3.850
10 N -0.367 5.367
11 C 0.284 3.716
12 O -0.459 6.459
13 C -0.095 4.095
14 N -0.251 5.251
15 C -0.068 4.068
16 C -0.010 4.010
17 O -0.311 6.311
18 C -0.025 4.025
19 C 0.000 4.000
20 O -0.396 6.396
21 C -0.028 4.028
22 C -0.203 4.203
23 C -0.169 4.169
24 C -0.189 4.189
25 H 0.077 0.923
26 H 0.000 1.000
27 H 0.001 0.999
28 H 0.240 0.760
29 H 0.109 0.891
30 H 0.142 0.858
31 H 0.073 0.927
32 H 0.123 0.877
33 H 0.091 0.909
34 H 0.064 0.936
35 H 0.077 0.923
36 H 0.086 0.914
37 H 0.101 0.899
38 H 0.065 0.935
39 H 0.244 0.756
40 H 0.143 0.857
41 H 0.104 0.896
42 H 0.098 0.902
43 H 0.109 0.891
44 H 0.086 0.914
45 H 0.061 0.939
46 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 6.905 -23.549 -2.351 24.652
hybrid contribution 0.231 0.970 -0.596 1.162
sum 7.135 -22.579 -2.947 23.862
Atomic orbital electron populations
1.70145 1.08316 1.28554 1.50054 1.26082 0.95765 1.03938 0.93902
0.85215 0.77917 0.76608 0.79522 1.18672 1.21126 1.18556 1.21606
0.94276 0.90658 1.52784 0.89853 1.18418 0.88611 0.84393 0.93597
1.46220 1.10910 1.05607 1.73997 1.21336 0.90242 0.84501 0.75482
1.90647 1.19142 1.85183 1.50901 1.22144 0.93776 0.88382 1.05158
1.61405 1.48592 1.01186 1.13949 1.22288 0.94789 0.89824 0.99851
1.22597 0.97220 0.95464 0.85691 1.87917 1.63212 1.50383 1.29636
1.22694 0.93350 0.89423 0.96986 1.22256 0.88336 0.97859 0.91580
1.86494 1.36363 1.84840 1.31937 1.23486 0.96482 0.98483 0.84336
1.23520 0.97670 1.01439 0.97708 1.22727 0.97503 1.00571 0.96087
1.23240 0.98830 0.98868 0.97952 0.92309 1.00034 0.99905 0.75961
0.89097 0.85838 0.92672 0.87707 0.90883 0.93600 0.92305 0.91350
0.89863 0.93486 0.75583 0.85681 0.89586 0.90239 0.89131 0.91434
0.93902 0.92211
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16
2 C 0.00 0.14 5.46 84.65 0.46 0.61 16
3 Si 0.98 42.88 29.54 68.60 2.03 44.91 16
4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16
5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16
6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16
7 C -0.56 -30.79 9.28 25.60 0.24 -30.55 16
8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16
9 C 0.27 15.41 5.43 85.63 0.46 15.87 16
10 N -0.72 -31.10 5.55 -466.78 -2.59 -33.69 16
11 C 0.50 20.59 5.54 87.66 0.49 21.08 16
12 O -0.58 -29.87 15.08 -3.04 -0.05 -29.91 16
13 C 0.04 1.03 5.04 85.56 0.43 1.46 16
14 N -0.53 -15.12 4.03 -872.40 -3.51 -18.63 16
15 C 0.06 1.23 5.50 86.31 0.47 1.70 16
16 C 0.07 1.35 6.30 71.98 0.45 1.80 16
17 O -0.39 -9.01 7.15 -144.35 -1.03 -10.04 16
18 C 0.05 0.92 6.32 71.98 0.45 1.38 16
19 C 0.08 1.18 7.43 71.98 0.53 1.72 16
20 O -0.59 -10.08 13.63 -144.35 -1.97 -12.04 16
21 C 0.08 2.29 3.54 45.44 0.16 2.45 16
22 C -0.16 -3.82 6.78 31.19 0.21 -3.61 16
23 C -0.13 -3.35 8.09 31.18 0.25 -3.10 16
24 C -0.15 -5.12 6.47 31.12 0.20 -4.92 16
25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
26 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16
27 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16
28 H 0.41 14.49 8.32 -92.71 -0.77 13.72 16
29 H 0.09 2.24 5.08 -2.39 -0.01 2.23 16
30 H 0.12 2.73 7.41 -2.39 -0.02 2.72 16
31 H 0.06 1.04 7.47 -2.39 -0.02 1.02 16
32 H 0.10 1.73 7.53 -2.38 -0.02 1.71 16
33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
39 H 0.39 3.13 9.12 -74.06 -0.68 2.45 16
40 H 0.13 3.72 5.33 -2.39 -0.01 3.71 16
41 H 0.09 1.88 5.69 -2.39 -0.01 1.87 16
42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16
44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
46 H 0.06 2.39 4.48 -2.39 -0.01 2.38 16
Total: -1.00 -79.01 364.79 -2.47 -81.48
By element:
Atomic # 1 Polarization: 29.57 SS G_CDS: -0.45 Total: 29.12 kcal
Atomic # 6 Polarization: 1.06 SS G_CDS: 4.82 Total: 5.88 kcal
Atomic # 7 Polarization: -103.58 SS G_CDS: -5.82 Total: -109.40 kcal
Atomic # 8 Polarization: -48.95 SS G_CDS: -3.05 Total: -51.99 kcal
Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal
Total: -79.01 -2.47 -81.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000852292468.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.370 kcal
(2) G-P(sol) polarization free energy of solvation -79.013 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.466 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.479 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds