Wall clock time and date at job start Tue Mar 31 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99675 * 2 1 4 4 H 1.48496 * 109.47117 * 90.00313 * 3 2 1 5 5 H 1.48501 * 109.46797 * 209.99894 * 3 2 1 6 6 H 1.48494 * 109.47283 * 329.99726 * 3 2 1 7 7 C 1.38810 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99572 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.88913 * 322.57374 * 10 9 7 12 12 C 1.55163 * 111.00010 * 198.64976 * 10 9 7 13 13 C 1.54321 * 102.94059 * 206.42762 * 12 10 9 14 14 N 1.47017 * 107.27263 * 22.19291 * 13 12 10 15 15 C 1.34779 * 125.64710 * 181.01796 * 14 13 12 16 16 O 1.21589 * 119.99684 * 174.38332 * 15 14 13 17 17 C 1.47649 * 120.00191 * 354.39248 * 15 14 13 18 18 C 1.41777 * 120.37353 * 186.84038 * 17 15 14 19 19 C 1.34538 * 120.14983 * 179.73507 * 18 17 15 20 20 N 1.36723 * 120.95384 * 0.50701 * 19 18 17 21 21 C 1.36439 * 132.26724 * 179.77046 * 20 19 18 22 22 C 1.35446 * 107.22196 * 180.02562 * 21 20 19 23 23 N 1.33186 * 108.62274 * 0.02562 * 22 21 20 24 24 C 1.32655 * 109.12465 * 359.97438 * 23 22 21 25 25 C 1.38437 * 120.37099 * 7.10792 * 17 15 14 26 26 C 1.47420 * 108.70322 * 1.06193 * 14 13 12 27 27 H 0.96998 * 119.99449 * 179.97438 * 1 2 3 28 28 H 0.96993 * 119.99874 * 0.02562 * 9 7 2 29 29 H 1.08995 * 110.72498 * 324.79248 * 12 10 9 30 30 H 1.09002 * 110.71650 * 88.06447 * 12 10 9 31 31 H 1.09004 * 109.88164 * 262.77449 * 13 12 10 32 32 H 1.09004 * 110.01230 * 141.68766 * 13 12 10 33 33 H 1.08005 * 119.91965 * 359.97438 * 18 17 15 34 34 H 1.07999 * 119.52225 * 180.25652 * 19 18 17 35 35 H 1.07992 * 126.38420 * 359.97438 * 21 20 19 36 36 H 1.07993 * 125.69087 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.45843 * 0.02732 * 25 17 15 38 38 H 1.09001 * 110.36692 * 217.02844 * 26 14 13 39 39 H 1.08999 * 110.36818 * 94.70992 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9524 -3.5886 -0.6212 12 6 1.1474 -4.8244 -0.4647 13 6 1.7846 -6.0520 0.2197 14 7 2.5604 -5.5586 1.3669 15 6 3.2844 -6.3197 2.2113 16 8 3.9702 -5.7945 3.0669 17 6 3.2448 -7.7913 2.0972 18 6 3.8853 -8.6030 3.0672 19 6 3.8419 -9.9435 2.9618 20 7 3.1934 -10.5463 1.9200 21 6 3.0108 -11.8570 1.5877 22 6 2.2858 -11.8835 0.4439 23 7 2.0260 -10.6301 0.0759 24 6 2.5664 -9.7978 0.9563 25 6 2.5866 -8.3938 1.0388 26 6 2.4143 -4.0935 1.4413 27 1 -0.4849 -0.8401 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 0.1248 -4.6769 -0.1176 30 1 1.1763 -4.9292 -1.5493 31 1 2.4437 -6.5660 -0.4801 32 1 1.0062 -6.7331 0.5638 33 1 4.4060 -8.1441 3.8948 34 1 4.3298 -10.5522 3.7087 35 1 3.3769 -12.7134 2.1343 36 1 1.9709 -12.7726 -0.0819 37 1 2.0962 -7.7941 0.2864 38 1 3.3514 -3.6344 1.7563 39 1 1.6107 -3.8267 2.1276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969319462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:24 Heat of formation + Delta-G solvation = 104.021910 kcal Electronic energy + Delta-G solvation = -23440.635077 eV Core-core repulsion = 19965.253501 eV Total energy + Delta-G solvation = -3475.381575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.12105 -40.23530 -37.78300 -36.98893 -34.76924 -33.87755 -31.69802 -30.64929 -29.73576 -29.44701 -27.33292 -25.25880 -23.87440 -23.16447 -22.58056 -22.12657 -20.44863 -19.63310 -18.45970 -17.61622 -17.31576 -16.81731 -16.31572 -15.97950 -15.53390 -14.92430 -14.77219 -14.38025 -14.37946 -13.92984 -13.76610 -13.58265 -13.34598 -13.07170 -12.55610 -12.43168 -12.36487 -12.07082 -11.24536 -11.23748 -11.07218 -10.71662 -10.66873 -10.46605 -10.35560 -10.04888 -10.00109 -9.26371 -9.21782 -9.06021 -8.55640 -8.19952 -7.19040 -6.19368 -3.22123 0.16871 0.78337 2.24676 2.39643 2.77182 2.91796 3.42044 3.50102 3.54117 3.67982 3.78809 4.09614 4.32610 4.37656 4.55963 4.64591 4.74386 4.92603 4.99102 5.05083 5.08331 5.14784 5.29327 5.38901 5.54648 5.60146 5.62808 5.71572 5.77310 5.91080 6.03042 6.08980 6.19850 6.24514 6.34301 6.46827 6.66495 6.73128 7.50341 7.52984 7.73533 8.10968 8.66563 9.09324 9.95977 10.08201 11.28530 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.002952 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.662003 B = 9482.088117 C =10140.539953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.040 4.040 3 Si 1.083 2.917 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.340 4.340 8 H 0.068 0.932 9 N -0.723 5.723 10 C 0.177 3.823 11 H 0.068 0.932 12 C -0.143 4.143 13 C 0.089 3.911 14 N -0.604 5.604 15 C 0.571 3.429 16 O -0.535 6.535 17 C -0.108 4.108 18 C -0.092 4.092 19 C 0.042 3.958 20 N -0.355 5.355 21 C -0.095 4.095 22 C 0.031 3.969 23 N -0.482 5.482 24 C 0.209 3.791 25 C -0.069 4.069 26 C 0.083 3.917 27 H 0.256 0.744 28 H 0.371 0.629 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.190 0.810 38 H 0.076 0.924 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -24.681 3.184 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.238 4.238 3 Si 0.913 3.087 4 H -0.222 1.222 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.471 4.471 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.085 0.915 12 C -0.181 4.181 13 C -0.034 4.034 14 N -0.336 5.336 15 C 0.360 3.640 16 O -0.414 6.414 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.079 4.079 20 N -0.027 5.027 21 C -0.228 4.228 22 C -0.122 4.122 23 N -0.201 5.201 24 C -0.033 4.033 25 C -0.089 4.089 26 C -0.042 4.042 27 H 0.067 0.933 28 H 0.205 0.795 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.206 0.794 38 H 0.095 0.905 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.741 -22.506 3.002 23.420 hybrid contribution 0.385 -2.268 0.895 2.468 sum 6.127 -24.774 3.897 25.816 Atomic orbital electron populations 1.70869 1.06089 1.28540 1.52941 1.25820 0.96991 1.01130 0.99819 0.83198 0.73929 0.75175 0.76381 1.22154 1.22010 1.21313 1.20086 0.92198 0.85500 1.49299 0.91403 1.42310 1.04848 1.00358 1.88880 1.21257 0.94640 0.85613 0.92017 0.91454 1.22983 1.00330 0.94000 1.00821 1.22535 0.94978 0.97851 0.88061 1.48429 1.47429 1.09574 1.28215 1.17550 0.79809 0.85296 0.81366 1.90798 1.40899 1.73948 1.35708 1.20060 1.01070 0.94106 0.96520 1.20804 0.99474 0.90929 1.00080 1.21474 1.00047 0.94348 0.92033 1.42920 1.33901 1.07865 1.17999 1.22784 1.11870 0.84867 1.03302 1.22599 0.99150 0.95579 0.94897 1.70697 1.23348 1.00614 1.25475 1.20891 0.99928 0.93499 0.88934 1.22406 0.97296 0.89982 0.99239 1.23478 1.02304 0.76361 1.02072 0.93281 0.79537 0.90260 0.89694 0.90341 0.90492 0.81944 0.81401 0.79908 0.79999 0.79409 0.90537 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.29 13.70 55.49 0.76 -27.53 16 2 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 3 Si 1.08 25.54 29.92 -169.99 -5.09 20.45 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.34 -9.23 9.98 -15.06 -0.15 -9.39 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.09 5.28 -51.35 -0.27 -17.36 16 10 C 0.18 3.31 3.69 -65.78 -0.24 3.07 16 11 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 12 C -0.14 -2.01 6.58 -24.89 -0.16 -2.18 16 13 C 0.09 1.08 4.88 -3.07 -0.01 1.07 16 14 N -0.60 -9.27 3.33 -174.49 -0.58 -9.85 16 15 C 0.57 8.97 7.81 -12.42 -0.10 8.88 16 16 O -0.54 -10.11 16.65 5.29 0.09 -10.02 16 17 C -0.11 -1.36 5.90 -104.63 -0.62 -1.98 16 18 C -0.09 -0.94 9.54 -39.54 -0.38 -1.32 16 19 C 0.04 0.35 10.91 -16.68 -0.18 0.17 16 20 N -0.35 -3.58 2.94 -62.75 -0.18 -3.77 16 21 C -0.10 -0.77 11.74 -16.50 -0.19 -0.96 16 22 C 0.03 0.29 11.83 -17.96 -0.21 0.08 16 23 N -0.48 -6.06 11.31 -12.80 -0.14 -6.20 16 24 C 0.21 2.56 7.79 -155.96 -1.22 1.34 16 25 C -0.07 -0.82 8.72 -38.60 -0.34 -1.15 16 26 C 0.08 1.52 6.63 -2.53 -0.02 1.50 16 27 H 0.26 7.51 6.77 -40.82 -0.28 7.24 16 28 H 0.37 8.95 6.54 -40.82 -0.27 8.69 16 29 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.82 6.74 -51.93 -0.35 0.47 16 32 H 0.08 0.82 6.75 -51.93 -0.35 0.47 16 33 H 0.16 1.51 7.71 -52.48 -0.40 1.11 16 34 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.19 2.01 2.79 -56.10 -0.16 1.86 16 38 H 0.08 1.54 7.99 -51.93 -0.41 1.12 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -34.77 325.64 -8.81 -43.58 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.38 Total: 7.89 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.92 Total: -2.09 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.42 Total: -64.71 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.09 Total: 20.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.77 -8.81 -43.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969319462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.597 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds