Wall clock time and date at job start Tue Mar 31 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99675 * 2 1 4 4 H 1.48496 * 109.47117 * 90.00313 * 3 2 1 5 5 H 1.48501 * 109.46797 * 209.99894 * 3 2 1 6 6 H 1.48494 * 109.47283 * 329.99726 * 3 2 1 7 7 C 1.38810 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99572 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.88913 * 322.57374 * 10 9 7 12 12 C 1.55163 * 111.00010 * 198.64976 * 10 9 7 13 13 C 1.54321 * 102.94059 * 206.42762 * 12 10 9 14 14 N 1.47017 * 107.27263 * 22.19291 * 13 12 10 15 15 C 1.34779 * 125.64710 * 181.01796 * 14 13 12 16 16 O 1.21589 * 119.99684 * 174.38332 * 15 14 13 17 17 C 1.47649 * 120.00191 * 354.39248 * 15 14 13 18 18 C 1.41777 * 120.37353 * 186.84038 * 17 15 14 19 19 C 1.34538 * 120.14983 * 179.73507 * 18 17 15 20 20 N 1.36723 * 120.95384 * 0.50701 * 19 18 17 21 21 C 1.36439 * 132.26724 * 179.77046 * 20 19 18 22 22 C 1.35446 * 107.22196 * 180.02562 * 21 20 19 23 23 N 1.33186 * 108.62274 * 0.02562 * 22 21 20 24 24 C 1.32655 * 109.12465 * 359.97438 * 23 22 21 25 25 C 1.38437 * 120.37099 * 7.10792 * 17 15 14 26 26 C 1.47420 * 108.70322 * 1.06193 * 14 13 12 27 27 H 0.96998 * 119.99449 * 179.97438 * 1 2 3 28 28 H 0.96993 * 119.99874 * 0.02562 * 9 7 2 29 29 H 1.08995 * 110.72498 * 324.79248 * 12 10 9 30 30 H 1.09002 * 110.71650 * 88.06447 * 12 10 9 31 31 H 1.09004 * 109.88164 * 262.77449 * 13 12 10 32 32 H 1.09004 * 110.01230 * 141.68766 * 13 12 10 33 33 H 1.08005 * 119.91965 * 359.97438 * 18 17 15 34 34 H 1.07999 * 119.52225 * 180.25652 * 19 18 17 35 35 H 1.07992 * 126.38420 * 359.97438 * 21 20 19 36 36 H 1.07993 * 125.69087 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.45843 * 0.02732 * 25 17 15 38 38 H 1.09001 * 110.36692 * 217.02844 * 26 14 13 39 39 H 1.08999 * 110.36818 * 94.70992 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9524 -3.5886 -0.6212 12 6 1.1474 -4.8244 -0.4647 13 6 1.7846 -6.0520 0.2197 14 7 2.5604 -5.5586 1.3669 15 6 3.2844 -6.3197 2.2113 16 8 3.9702 -5.7945 3.0669 17 6 3.2448 -7.7913 2.0972 18 6 3.8853 -8.6030 3.0672 19 6 3.8419 -9.9435 2.9618 20 7 3.1934 -10.5463 1.9200 21 6 3.0108 -11.8570 1.5877 22 6 2.2858 -11.8835 0.4439 23 7 2.0260 -10.6301 0.0759 24 6 2.5664 -9.7978 0.9563 25 6 2.5866 -8.3938 1.0388 26 6 2.4143 -4.0935 1.4413 27 1 -0.4849 -0.8401 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 0.1248 -4.6769 -0.1176 30 1 1.1763 -4.9292 -1.5493 31 1 2.4437 -6.5660 -0.4801 32 1 1.0062 -6.7331 0.5638 33 1 4.4060 -8.1441 3.8948 34 1 4.3298 -10.5522 3.7087 35 1 3.3769 -12.7134 2.1343 36 1 1.9709 -12.7726 -0.0819 37 1 2.0962 -7.7941 0.2864 38 1 3.3514 -3.6344 1.7563 39 1 1.6107 -3.8267 2.1276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969319462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:23 Heat of formation + Delta-G solvation = 81.160604 kcal Electronic energy + Delta-G solvation = -23441.626417 eV Core-core repulsion = 19965.253501 eV Total energy + Delta-G solvation = -3476.372916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.85486 -41.45166 -39.03089 -37.95609 -36.45035 -34.91127 -33.32705 -31.45021 -31.14852 -30.42716 -28.72455 -26.42273 -25.46365 -24.24230 -23.69509 -22.86800 -21.89782 -20.78060 -19.54976 -19.33394 -18.25417 -17.77277 -17.45564 -16.93456 -16.69507 -16.51170 -15.87100 -15.68230 -15.48397 -15.26434 -14.86066 -14.67904 -14.55713 -14.21180 -13.90718 -13.73666 -13.39531 -12.92104 -12.87086 -12.71487 -12.37295 -12.14214 -12.10319 -11.87394 -11.78505 -11.33039 -11.25558 -11.18974 -11.00045 -9.99946 -9.83152 -9.20891 -8.93319 -8.41911 -5.38406 -0.67624 0.04223 1.49985 1.57426 1.58837 1.67619 1.71253 1.82890 1.95094 2.49606 2.68824 2.92873 3.30820 3.34953 3.44746 3.54003 3.69591 3.77807 3.89259 3.96932 4.04613 4.19593 4.24984 4.36500 4.42544 4.45096 4.51376 4.62085 4.70408 4.83334 4.86361 4.89627 5.06466 5.07714 5.22761 5.33241 5.58653 5.59793 5.97802 6.30670 6.48472 6.77852 6.86975 7.04215 7.93525 8.02887 9.09917 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.002952 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.662003 B = 9482.088117 C =10140.539953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.098 4.098 3 Si 1.127 2.873 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.291 1.291 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.734 5.734 10 C 0.170 3.830 11 H 0.062 0.938 12 C -0.130 4.130 13 C 0.092 3.908 14 N -0.605 5.605 15 C 0.569 3.431 16 O -0.577 6.577 17 C -0.122 4.122 18 C -0.112 4.112 19 C 0.063 3.937 20 N -0.362 5.362 21 C -0.074 4.074 22 C 0.014 3.986 23 N -0.511 5.511 24 C 0.177 3.823 25 C -0.066 4.066 26 C 0.095 3.905 27 H 0.247 0.753 28 H 0.366 0.634 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.214 0.786 35 H 0.228 0.772 36 H 0.211 0.789 37 H 0.194 0.806 38 H 0.050 0.950 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.553 -28.072 3.151 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.289 4.289 3 Si 0.952 3.048 4 H -0.215 1.215 5 H -0.199 1.199 6 H -0.217 1.217 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.376 5.376 10 C 0.059 3.941 11 H 0.080 0.920 12 C -0.168 4.168 13 C -0.029 4.029 14 N -0.337 5.337 15 C 0.360 3.640 16 O -0.458 6.458 17 C -0.131 4.131 18 C -0.133 4.133 19 C -0.057 4.057 20 N -0.034 5.034 21 C -0.206 4.206 22 C -0.139 4.139 23 N -0.232 5.232 24 C -0.064 4.064 25 C -0.086 4.086 26 C -0.031 4.031 27 H 0.058 0.942 28 H 0.199 0.801 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.184 0.816 34 H 0.231 0.769 35 H 0.244 0.756 36 H 0.228 0.772 37 H 0.210 0.790 38 H 0.069 0.931 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.607 -25.963 2.951 26.953 hybrid contribution 0.147 -1.463 0.901 1.724 sum 6.754 -27.426 3.852 28.507 Atomic orbital electron populations 1.70965 1.07093 1.28164 1.55737 1.27121 0.97111 1.04520 1.00187 0.82630 0.73658 0.71789 0.76757 1.21456 1.19854 1.21718 1.20372 0.92316 0.86897 1.47188 0.91673 1.42422 1.04785 1.01216 1.89126 1.21403 0.95226 0.85374 0.92090 0.92002 1.22924 0.99335 0.92315 1.02269 1.22748 0.95662 0.97254 0.87265 1.48424 1.47905 1.08119 1.29248 1.18095 0.78788 0.86724 0.80436 1.90763 1.42671 1.75017 1.37375 1.19793 1.03182 0.91842 0.98246 1.20888 1.00454 0.91818 1.00143 1.22038 0.98089 0.93984 0.91620 1.43193 1.33703 1.08539 1.17954 1.23575 1.09542 0.85004 1.02492 1.23260 0.99394 0.95421 0.95785 1.70648 1.24049 1.02140 1.26344 1.20909 1.01612 0.93685 0.90201 1.22344 0.96936 0.90384 0.98891 1.22999 1.00217 0.78702 1.01208 0.94208 0.80077 0.90195 0.87610 0.87887 0.88162 0.81646 0.76907 0.75566 0.77207 0.79013 0.93144 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.88 13.70 21.65 0.30 -59.59 16 2 C -0.10 -5.60 5.50 84.86 0.47 -5.13 16 3 Si 1.13 52.01 29.92 68.60 2.05 54.06 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.34 -18.63 9.98 84.03 0.84 -17.79 16 8 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.73 -35.63 5.28 -316.37 -1.67 -37.30 16 10 C 0.17 6.45 3.69 46.38 0.17 6.62 16 11 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 12 C -0.13 -3.55 6.58 31.78 0.21 -3.34 16 13 C 0.09 2.13 4.88 86.73 0.42 2.55 16 14 N -0.60 -18.77 3.33 -824.22 -2.74 -21.51 16 15 C 0.57 18.20 7.81 86.73 0.68 18.87 16 16 O -0.58 -22.67 16.65 -4.00 -0.07 -22.74 16 17 C -0.12 -2.98 5.90 -19.87 -0.12 -3.09 16 18 C -0.11 -2.13 9.54 22.30 0.21 -1.92 16 19 C 0.06 0.83 10.91 83.08 0.91 1.74 16 20 N -0.36 -6.05 2.94 -352.44 -1.04 -7.09 16 21 C -0.07 -0.85 11.74 83.33 0.98 0.13 16 22 C 0.01 0.21 11.83 83.84 0.99 1.20 16 23 N -0.51 -11.74 11.31 -194.41 -2.20 -13.94 16 24 C 0.18 3.95 7.79 133.97 1.04 5.00 16 25 C -0.07 -1.46 8.72 22.91 0.20 -1.26 16 26 C 0.09 3.62 6.63 86.86 0.58 4.20 16 27 H 0.25 15.01 6.77 -92.71 -0.63 14.38 16 28 H 0.37 18.25 6.54 -92.71 -0.61 17.64 16 29 H 0.08 2.20 8.00 -2.39 -0.02 2.18 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.10 1.94 6.74 -2.38 -0.02 1.93 16 32 H 0.10 1.93 6.75 -2.38 -0.02 1.92 16 33 H 0.17 2.96 7.71 -2.91 -0.02 2.94 16 34 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.23 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.19 3.81 2.79 -6.31 -0.02 3.79 16 38 H 0.05 2.16 7.99 -2.39 -0.02 2.14 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -78.73 325.64 2.84 -75.89 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.62 Total: 24.44 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.58 Total: 7.77 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -7.35 Total: -139.42 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.07 Total: -22.74 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Total: -78.73 2.84 -75.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969319462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.050 kcal (2) G-P(sol) polarization free energy of solvation -78.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds