Wall clock time and date at job start Tue Mar 31 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48503 * 109.47001 * 270.00176 * 3 2 1 5 5 H 1.48493 * 109.46908 * 29.99896 * 3 2 1 6 6 H 1.48497 * 109.47035 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99427 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00049 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00014 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.77818 * 323.20679 * 10 9 7 12 12 C 1.55159 * 110.71867 * 199.97268 * 10 9 7 13 13 C 1.55130 * 101.48193 * 205.96792 * 12 10 9 14 14 N 1.47415 * 104.72605 * 37.29489 * 13 12 10 15 15 C 1.34782 * 125.65092 * 155.82174 * 14 13 12 16 16 O 1.21566 * 120.00163 * 179.69172 * 15 14 13 17 17 C 1.47755 * 119.99779 * 359.68499 * 15 14 13 18 18 N 1.32748 * 120.05897 * 0.02562 * 17 15 14 19 19 C 1.31724 * 122.13156 * 179.97438 * 18 17 15 20 20 C 1.38299 * 121.69052 * 0.02633 * 19 18 17 21 21 C 1.39022 * 119.09573 * 359.97438 * 20 19 18 22 22 N 1.37190 * 134.65722 * 179.97438 * 21 20 19 23 23 H 0.97005 * 125.05759 * 0.04225 * 22 21 20 24 24 C 1.36722 * 109.88173 * 180.02562 * 22 21 20 25 25 C 1.34560 * 109.95373 * 359.97438 * 24 22 21 26 26 C 1.40411 * 120.05849 * 179.97438 * 17 15 14 27 27 C 1.47028 * 108.70258 * 335.54950 * 14 13 12 28 28 H 0.97006 * 119.99881 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99794 * 359.97438 * 9 7 2 30 30 H 1.08996 * 111.00213 * 324.20669 * 12 10 9 31 31 H 1.08994 * 111.00351 * 88.06088 * 12 10 9 32 32 H 1.09004 * 110.49347 * 278.45118 * 13 12 10 33 33 H 1.08998 * 110.34066 * 156.06262 * 13 12 10 34 34 H 1.07998 * 119.15206 * 179.97438 * 19 18 17 35 35 H 1.08005 * 120.45524 * 179.97438 * 20 19 18 36 36 H 1.07995 * 125.02253 * 179.97438 * 24 22 21 37 37 H 1.07999 * 126.50519 * 179.97438 * 25 24 22 38 38 H 1.09005 * 109.87663 * 120.70495 * 27 14 13 39 39 H 1.08998 * 109.88545 * 241.71344 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5983 -3.2146 0.6082 12 6 5.5675 -2.2650 0.4954 13 6 6.3000 -3.4437 -0.1978 14 7 5.6621 -3.5545 -1.5222 15 6 6.2246 -4.0924 -2.6226 16 8 5.6004 -4.1360 -3.6648 17 6 7.6000 -4.6288 -2.5621 18 7 8.2825 -4.5820 -1.4245 19 6 9.5104 -5.0484 -1.3244 20 6 10.1623 -5.6158 -2.4041 21 6 9.5035 -5.6959 -3.6257 22 7 9.8304 -6.1779 -4.8678 23 1 10.6790 -6.5857 -5.1016 24 6 8.7821 -5.9985 -5.7270 25 6 7.7586 -5.4061 -5.0851 26 6 8.1871 -5.1899 -3.7075 27 6 4.3081 -2.9870 -1.4422 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3621 0.0004 30 1 5.9619 -1.3052 0.1618 31 1 5.6266 -2.3542 1.5800 32 1 6.1615 -4.3649 0.3683 33 1 7.3613 -3.2196 -0.3055 34 1 10.0214 -4.9854 -0.3751 35 1 11.1694 -5.9917 -2.2998 36 1 8.7764 -6.2892 -6.7670 37 1 6.8016 -5.1404 -5.5094 38 1 4.2097 -2.1621 -2.1480 39 1 3.5697 -3.7567 -1.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970000857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:27 Heat of formation + Delta-G solvation = 71.810619 kcal Electronic energy + Delta-G solvation = -23578.573298 eV Core-core repulsion = 20101.794937 eV Total energy + Delta-G solvation = -3476.778362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.84531 -39.66570 -38.08542 -37.18046 -34.16056 -32.49369 -31.58681 -30.85367 -29.87605 -29.35322 -27.69044 -25.09237 -23.43425 -22.80801 -22.17141 -21.27759 -20.33699 -19.58006 -18.31037 -17.73961 -17.15999 -16.22188 -16.09567 -15.47289 -15.26955 -14.97776 -14.73642 -14.44072 -13.92144 -13.67666 -13.38401 -13.22486 -13.03601 -12.82964 -12.55765 -12.43894 -12.06176 -11.94753 -11.69080 -11.17650 -10.83370 -10.68555 -10.49522 -10.16991 -10.09646 -9.86072 -9.58321 -9.38739 -9.11487 -8.95017 -8.30071 -8.06667 -7.31834 -5.76880 -3.14149 0.32232 1.23739 2.39006 2.66111 2.89716 3.20127 3.39564 3.42849 3.47510 3.89646 4.11076 4.32926 4.52137 4.59757 4.70143 4.85794 5.05095 5.06748 5.16204 5.25406 5.34045 5.40207 5.63948 5.68465 5.72289 5.76092 5.94006 6.02229 6.10926 6.26577 6.32698 6.39254 6.43994 6.56857 6.62309 6.76615 6.87756 7.06745 7.66887 7.85764 7.98612 8.41382 8.42711 9.19162 9.91305 10.09868 11.41029 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.003279 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.536076 B = 8536.942228 C = 9041.195760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.738 5.738 10 C 0.176 3.824 11 H 0.074 0.926 12 C -0.148 4.148 13 C 0.106 3.894 14 N -0.592 5.592 15 C 0.575 3.425 16 O -0.534 6.534 17 C 0.147 3.853 18 N -0.468 5.468 19 C 0.097 3.903 20 C -0.165 4.165 21 C 0.119 3.881 22 N -0.590 5.590 23 H 0.418 0.582 24 C 0.043 3.957 25 C -0.164 4.164 26 C -0.112 4.112 27 C 0.083 3.917 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.134 0.866 36 H 0.178 0.822 37 H 0.163 0.837 38 H 0.073 0.927 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.656 -13.855 -6.283 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.091 0.909 12 C -0.187 4.187 13 C -0.017 4.017 14 N -0.324 5.324 15 C 0.361 3.639 16 O -0.411 6.411 17 C 0.003 3.997 18 N -0.181 5.181 19 C -0.057 4.057 20 C -0.188 4.188 21 C 0.004 3.996 22 N -0.194 5.194 23 H 0.256 0.744 24 C -0.082 4.082 25 C -0.190 4.190 26 C -0.121 4.121 27 C -0.042 4.042 28 H 0.070 0.930 29 H 0.197 0.803 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.181 0.819 35 H 0.152 0.848 36 H 0.195 0.805 37 H 0.181 0.819 38 H 0.091 0.909 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.769 -13.634 -6.194 28.945 hybrid contribution 1.436 0.590 -0.914 1.801 sum 26.205 -13.044 -7.108 30.123 Atomic orbital electron populations 1.69704 1.05134 1.25915 1.57049 1.24679 0.95230 0.97256 1.01673 0.86560 0.79242 0.84945 0.77870 1.20999 1.21690 1.20202 1.19099 0.80391 0.94898 1.43593 0.88963 1.42727 1.04145 1.01621 1.89452 1.21189 0.90673 0.89722 0.91928 0.90858 1.23207 0.96563 0.98315 1.00592 1.22653 0.99002 0.97892 0.82135 1.48387 1.16739 1.57289 1.09975 1.17398 0.84545 0.78873 0.83054 1.90763 1.63029 1.57881 1.29465 1.20738 0.94384 0.96398 0.88217 1.67883 1.08408 1.16930 1.24882 1.22451 0.90538 0.94653 0.98026 1.21162 1.01428 1.05385 0.90817 1.18270 0.94930 0.98994 0.87406 1.41646 1.16333 1.53885 1.07552 0.74446 1.22099 0.87279 1.02611 0.96181 1.21994 1.00550 1.05028 0.91397 1.19843 0.93941 1.02837 0.95460 1.23179 0.81079 0.98221 1.01721 0.92983 0.80267 0.91008 0.89977 0.91581 0.88017 0.81879 0.84842 0.80534 0.81908 0.90857 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.15 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 7 C -0.25 -7.03 10.46 -15.06 -0.16 -7.18 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.74 -17.37 4.98 -51.65 -0.26 -17.63 16 10 C 0.18 3.39 3.59 -66.10 -0.24 3.15 16 11 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 12 C -0.15 -2.26 6.71 -24.46 -0.16 -2.42 16 13 C 0.11 1.52 5.96 -2.41 -0.01 1.50 16 14 N -0.59 -10.25 3.32 -171.53 -0.57 -10.82 16 15 C 0.57 10.30 7.83 -12.37 -0.10 10.21 16 16 O -0.53 -10.88 15.47 5.31 0.08 -10.80 16 17 C 0.15 2.22 6.75 -82.76 -0.56 1.66 16 18 N -0.47 -5.98 6.60 -9.67 -0.06 -6.04 16 19 C 0.10 0.90 11.13 -17.58 -0.20 0.71 16 20 C -0.16 -1.36 10.14 -39.27 -0.40 -1.76 16 21 C 0.12 1.21 7.34 -84.03 -0.62 0.59 16 22 N -0.59 -4.22 6.04 -10.59 -0.06 -4.29 16 23 H 0.42 1.44 8.96 -40.82 -0.37 1.07 16 24 C 0.04 0.34 11.82 -16.67 -0.20 0.14 16 25 C -0.16 -1.97 10.25 -37.83 -0.39 -2.36 16 26 C -0.11 -1.52 6.15 -104.88 -0.65 -2.16 16 27 C 0.08 1.62 6.62 -3.06 -0.02 1.60 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.36 8.42 5.58 -40.82 -0.23 8.20 16 30 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.36 5.88 -51.93 -0.31 1.05 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.16 2.12 7.23 -52.49 -0.38 1.74 16 38 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -35.62 325.89 -8.35 -43.97 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.66 Total: 8.01 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -3.79 Total: 3.80 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.18 Total: -67.32 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.62 -8.35 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970000857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.777 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds