Wall clock time and date at job start Tue Mar 31 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48503 * 109.47001 * 270.00176 * 3 2 1 5 5 H 1.48493 * 109.46908 * 29.99896 * 3 2 1 6 6 H 1.48497 * 109.47035 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99427 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00049 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00014 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.77818 * 323.20679 * 10 9 7 12 12 C 1.55159 * 110.71867 * 199.97268 * 10 9 7 13 13 C 1.55130 * 101.48193 * 205.96792 * 12 10 9 14 14 N 1.47415 * 104.72605 * 37.29489 * 13 12 10 15 15 C 1.34782 * 125.65092 * 155.82174 * 14 13 12 16 16 O 1.21566 * 120.00163 * 179.69172 * 15 14 13 17 17 C 1.47755 * 119.99779 * 359.68499 * 15 14 13 18 18 N 1.32748 * 120.05897 * 0.02562 * 17 15 14 19 19 C 1.31724 * 122.13156 * 179.97438 * 18 17 15 20 20 C 1.38299 * 121.69052 * 0.02633 * 19 18 17 21 21 C 1.39022 * 119.09573 * 359.97438 * 20 19 18 22 22 N 1.37190 * 134.65722 * 179.97438 * 21 20 19 23 23 H 0.97005 * 125.05759 * 0.04225 * 22 21 20 24 24 C 1.36722 * 109.88173 * 180.02562 * 22 21 20 25 25 C 1.34560 * 109.95373 * 359.97438 * 24 22 21 26 26 C 1.40411 * 120.05849 * 179.97438 * 17 15 14 27 27 C 1.47028 * 108.70258 * 335.54950 * 14 13 12 28 28 H 0.97006 * 119.99881 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99794 * 359.97438 * 9 7 2 30 30 H 1.08996 * 111.00213 * 324.20669 * 12 10 9 31 31 H 1.08994 * 111.00351 * 88.06088 * 12 10 9 32 32 H 1.09004 * 110.49347 * 278.45118 * 13 12 10 33 33 H 1.08998 * 110.34066 * 156.06262 * 13 12 10 34 34 H 1.07998 * 119.15206 * 179.97438 * 19 18 17 35 35 H 1.08005 * 120.45524 * 179.97438 * 20 19 18 36 36 H 1.07995 * 125.02253 * 179.97438 * 24 22 21 37 37 H 1.07999 * 126.50519 * 179.97438 * 25 24 22 38 38 H 1.09005 * 109.87663 * 120.70495 * 27 14 13 39 39 H 1.08998 * 109.88545 * 241.71344 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5983 -3.2146 0.6082 12 6 5.5675 -2.2650 0.4954 13 6 6.3000 -3.4437 -0.1978 14 7 5.6621 -3.5545 -1.5222 15 6 6.2246 -4.0924 -2.6226 16 8 5.6004 -4.1360 -3.6648 17 6 7.6000 -4.6288 -2.5621 18 7 8.2825 -4.5820 -1.4245 19 6 9.5104 -5.0484 -1.3244 20 6 10.1623 -5.6158 -2.4041 21 6 9.5035 -5.6959 -3.6257 22 7 9.8304 -6.1779 -4.8678 23 1 10.6790 -6.5857 -5.1016 24 6 8.7821 -5.9985 -5.7270 25 6 7.7586 -5.4061 -5.0851 26 6 8.1871 -5.1899 -3.7075 27 6 4.3081 -2.9870 -1.4422 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3621 0.0004 30 1 5.9619 -1.3052 0.1618 31 1 5.6266 -2.3542 1.5800 32 1 6.1615 -4.3649 0.3683 33 1 7.3613 -3.2196 -0.3055 34 1 10.0214 -4.9854 -0.3751 35 1 11.1694 -5.9917 -2.2998 36 1 8.7764 -6.2892 -6.7670 37 1 6.8016 -5.1404 -5.5094 38 1 4.2097 -2.1621 -2.1480 39 1 3.5697 -3.7567 -1.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970000857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:25 Heat of formation + Delta-G solvation = 45.533716 kcal Electronic energy + Delta-G solvation = -23579.712750 eV Core-core repulsion = 20101.794937 eV Total energy + Delta-G solvation = -3477.917814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -42.62343 -40.94436 -39.00817 -38.60410 -36.01430 -33.68062 -33.16506 -31.73290 -31.32761 -30.28080 -29.18533 -26.37664 -25.01647 -23.68825 -23.46159 -22.27016 -21.63844 -20.82586 -19.79576 -19.04591 -18.43314 -17.54287 -17.09909 -16.50900 -16.49936 -16.13344 -15.88905 -15.66229 -15.37544 -15.11378 -14.77874 -14.37931 -14.24295 -13.91641 -13.82724 -13.71125 -13.64554 -13.25461 -12.98732 -12.74936 -12.51082 -12.31925 -12.15809 -11.83756 -11.61548 -11.23271 -11.04920 -10.96335 -10.37736 -9.89345 -9.64159 -9.40384 -8.87219 -8.03585 -5.39404 -0.55081 0.47181 1.38044 1.42412 1.49034 1.56301 1.81487 1.88926 2.08701 2.48099 2.94581 3.12050 3.26776 3.54385 3.57798 3.81277 3.84769 3.92622 4.05356 4.17440 4.31498 4.37891 4.43953 4.50828 4.55475 4.62233 4.80507 4.90781 5.01839 5.05003 5.07119 5.16946 5.29669 5.39258 5.49140 5.58942 5.75823 5.86965 6.20284 6.49793 6.58704 6.81992 7.04758 7.13590 7.78524 7.98511 9.17622 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.003279 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.536076 B = 8536.942228 C = 9041.195760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.058 0.942 9 N -0.739 5.739 10 C 0.170 3.830 11 H 0.072 0.928 12 C -0.133 4.133 13 C 0.114 3.886 14 N -0.596 5.596 15 C 0.566 3.434 16 O -0.577 6.577 17 C 0.103 3.897 18 N -0.474 5.474 19 C 0.083 3.917 20 C -0.134 4.134 21 C 0.108 3.892 22 N -0.571 5.571 23 H 0.441 0.559 24 C 0.091 3.909 25 C -0.228 4.228 26 C -0.136 4.136 27 C 0.092 3.908 28 H 0.259 0.741 29 H 0.369 0.631 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.203 0.797 35 H 0.180 0.820 36 H 0.222 0.778 37 H 0.135 0.865 38 H 0.044 0.956 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.169 -14.724 -5.728 34.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.076 0.924 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.090 0.910 12 C -0.171 4.171 13 C -0.008 4.008 14 N -0.328 5.328 15 C 0.355 3.645 16 O -0.457 6.457 17 C -0.040 4.040 18 N -0.187 5.187 19 C -0.071 4.071 20 C -0.157 4.157 21 C -0.007 4.007 22 N -0.177 5.177 23 H 0.283 0.717 24 C -0.036 4.036 25 C -0.254 4.254 26 C -0.145 4.145 27 C -0.034 4.034 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.220 0.780 35 H 0.198 0.802 36 H 0.238 0.762 37 H 0.153 0.847 38 H 0.062 0.938 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 30.377 -14.548 -5.616 34.146 hybrid contribution -0.155 0.648 -1.191 1.364 sum 30.222 -13.900 -6.807 33.954 Atomic orbital electron populations 1.69888 1.07208 1.26792 1.59323 1.25527 0.96124 1.01370 1.02289 0.85416 0.79043 0.79517 0.77880 1.21131 1.21951 1.16810 1.19050 0.82454 0.93604 1.41716 0.92395 1.42668 1.02561 1.03438 1.89469 1.21358 0.93044 0.87989 0.91579 0.91049 1.23179 0.92777 0.98869 1.02291 1.22802 0.99465 0.98116 0.80380 1.48455 1.15738 1.57270 1.11322 1.18093 0.85950 0.78106 0.82337 1.90716 1.64533 1.59520 1.30959 1.20201 0.93351 1.00291 0.90142 1.67700 1.09926 1.17101 1.23971 1.23160 0.89466 0.94337 1.00103 1.21681 1.02719 1.02126 0.89154 1.18497 0.93760 0.99313 0.89127 1.41655 1.16979 1.52746 1.06307 0.71704 1.22626 0.85524 0.98112 0.97386 1.21934 1.01557 1.09670 0.92214 1.20148 0.95840 1.02981 0.95517 1.22789 0.82619 0.96741 1.01211 0.93252 0.79684 0.90750 0.87144 0.90172 0.86321 0.77994 0.80223 0.76157 0.84720 0.93778 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.95 46.21 27.74 68.60 1.90 48.12 16 4 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.24 -10.42 6.52 99.48 0.65 -9.77 16 7 C -0.24 -13.80 10.46 84.03 0.88 -12.92 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 9 N -0.74 -35.08 4.98 -317.33 -1.58 -36.66 16 10 C 0.17 6.64 3.59 46.18 0.17 6.80 16 11 H 0.07 2.82 8.12 -2.39 -0.02 2.80 16 12 C -0.13 -3.80 6.71 32.06 0.22 -3.58 16 13 C 0.11 3.11 5.96 86.93 0.52 3.63 16 14 N -0.60 -21.45 3.32 -814.85 -2.71 -24.15 16 15 C 0.57 21.61 7.83 86.76 0.68 22.29 16 16 O -0.58 -25.84 15.47 -3.92 -0.06 -25.90 16 17 C 0.10 3.14 6.75 42.05 0.28 3.42 16 18 N -0.47 -11.27 6.60 -184.49 -1.22 -12.48 16 19 C 0.08 1.23 11.13 84.72 0.94 2.17 16 20 C -0.13 -1.58 10.14 22.47 0.23 -1.35 16 21 C 0.11 1.87 7.34 39.24 0.29 2.16 16 22 N -0.57 -5.89 6.04 -187.43 -1.13 -7.02 16 23 H 0.44 0.68 8.96 -92.70 -0.83 -0.15 16 24 C 0.09 1.20 11.82 83.09 0.98 2.18 16 25 C -0.23 -5.66 10.25 23.40 0.24 -5.42 16 26 C -0.14 -3.67 6.15 -20.03 -0.12 -3.79 16 27 C 0.09 3.83 6.62 86.73 0.57 4.41 16 28 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 29 H 0.37 16.68 5.58 -92.71 -0.52 16.16 16 30 H 0.07 2.13 8.00 -2.39 -0.02 2.11 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.12 2.91 5.88 -2.39 -0.01 2.90 16 34 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.22 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.13 3.99 7.23 -2.91 -0.02 3.97 16 38 H 0.04 2.06 8.03 -2.38 -0.02 2.04 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -85.47 325.89 1.54 -83.93 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.30 Total: 21.32 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 6.34 Total: 16.76 kcal Atomic # 7 Polarization: -137.89 SS G_CDS: -6.34 Total: -144.23 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.12 kcal Total: -85.47 1.54 -83.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970000857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.463 kcal (2) G-P(sol) polarization free energy of solvation -85.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds