Wall clock time and date at job start Tue Mar 31 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47263 * 2 1 4 4 H 1.09001 * 109.46788 * 305.00148 * 3 2 1 5 5 F 1.39896 * 109.46829 * 65.00244 * 3 2 1 6 6 C 1.50697 * 109.47055 * 185.00025 * 3 2 1 7 7 O 1.21278 * 119.99993 * 315.00380 * 6 3 2 8 8 N 1.34779 * 120.00067 * 134.99989 * 6 3 2 9 9 C 1.47088 * 125.62280 * 0.02581 * 8 6 3 10 10 C 1.54463 * 107.42260 * 181.03859 * 9 8 6 11 11 C 1.54378 * 102.86174 * 21.43492 * 10 9 8 12 12 C 1.47882 * 125.80063 * 179.97438 * 8 6 3 13 13 C 1.52360 * 110.38080 * 207.57993 * 11 10 9 14 14 N 1.47325 * 108.40806 * 286.58966 * 13 11 10 15 15 C 1.36939 * 121.07429 * 130.79876 * 14 13 11 16 16 H 1.08001 * 119.99817 * 205.69482 * 15 14 13 17 17 C 1.38808 * 120.00009 * 25.69159 * 15 14 13 18 18 N 1.31629 * 119.99723 * 16.72262 * 17 15 14 19 19 Si 1.86793 * 120.00380 * 196.71297 * 17 15 14 20 20 H 1.48499 * 109.46963 * 90.00257 * 19 17 15 21 21 H 1.48496 * 109.47403 * 210.00531 * 19 17 15 22 22 H 1.48504 * 109.47240 * 330.00589 * 19 17 15 23 23 C 1.47168 * 117.85541 * 310.82319 * 14 13 11 24 24 C 1.53288 * 108.55203 * 51.22234 * 23 14 13 25 25 O 1.41879 * 110.72295 * 83.67991 * 11 10 9 26 26 H 1.08999 * 109.47317 * 299.99826 * 1 2 3 27 27 H 1.08999 * 109.47460 * 59.99487 * 1 2 3 28 28 H 1.08995 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46754 * 240.00663 * 2 1 3 30 30 H 1.08999 * 109.47460 * 120.00513 * 2 1 3 31 31 H 1.09004 * 109.87653 * 61.54750 * 9 8 6 32 32 H 1.09001 * 109.88165 * 300.54097 * 9 8 6 33 33 H 1.09007 * 110.73525 * 139.77107 * 10 9 8 34 34 H 1.09000 * 110.74003 * 262.90780 * 10 9 8 35 35 H 1.08997 * 110.29737 * 37.84343 * 12 8 6 36 36 H 1.08993 * 110.44233 * 275.49985 * 12 8 6 37 37 H 1.08997 * 109.67907 * 46.32151 * 13 11 10 38 38 H 1.09009 * 109.67558 * 166.86241 * 13 11 10 39 39 H 0.96993 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.62333 * 291.50811 * 23 14 13 41 41 H 1.08996 * 109.77761 * 171.03115 * 23 14 13 42 42 H 1.08998 * 109.50650 * 187.07754 * 24 23 14 43 43 H 1.09000 * 109.50860 * 66.93028 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 9 1.6699 2.0679 1.1954 6 6 3.5419 1.4443 -0.1238 7 8 4.2063 0.6810 0.5446 8 7 4.1467 2.2940 -0.9774 9 6 3.4650 3.2682 -1.8434 10 6 4.5519 3.9998 -2.6615 11 6 5.7421 3.0181 -2.6071 12 6 5.6045 2.4048 -1.2002 13 6 7.0591 3.7733 -2.7352 14 7 7.2098 4.2120 -4.1335 15 6 7.5373 5.5065 -4.4368 16 1 7.2520 5.9267 -5.3899 17 6 8.2361 6.2788 -3.5191 18 7 8.8664 5.7018 -2.5180 19 14 8.2820 8.1369 -3.7049 20 1 7.1415 8.7366 -2.9667 21 1 9.5581 8.6583 -3.1527 22 1 8.1829 8.4932 -5.1432 23 6 6.9963 3.2142 -5.1941 24 6 5.6510 2.5217 -4.9485 25 8 5.6163 2.0206 -3.6083 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.9150 3.9850 -1.2336 32 1 2.7803 2.7511 -2.5156 33 1 4.2239 4.1519 -3.6899 34 1 4.8108 4.9507 -2.1959 35 1 6.0677 1.4187 -1.1690 36 1 6.0547 3.0603 -0.4548 37 1 7.0496 4.6420 -2.0770 38 1 7.8864 3.1167 -2.4654 39 1 9.3550 6.2414 -1.8770 40 1 7.7979 2.4760 -5.1689 41 1 6.9824 3.7066 -6.1664 42 1 5.5339 1.6951 -5.6493 43 1 4.8417 3.2378 -5.0905 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972503095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:25 Heat of formation + Delta-G solvation = -118.655960 kcal Electronic energy + Delta-G solvation = -26023.244150 eV Core-core repulsion = 22210.977657 eV Total energy + Delta-G solvation = -3812.266494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.98306 -41.62630 -40.14086 -37.62442 -36.26905 -34.98666 -33.27441 -33.01894 -30.94242 -29.55828 -28.71046 -26.98357 -25.25231 -24.21751 -23.24003 -22.60860 -20.79482 -20.28445 -18.92475 -18.90696 -17.80719 -17.61863 -17.05107 -16.71302 -16.42305 -16.16122 -16.04588 -15.75817 -15.18856 -15.15011 -14.90642 -14.56895 -14.41161 -14.32210 -13.84420 -13.72731 -13.66377 -13.23113 -13.08461 -12.88653 -12.82874 -12.65453 -12.50533 -12.25153 -12.12576 -12.03806 -11.97003 -11.84079 -11.77428 -11.17330 -10.98120 -10.75591 -10.47697 -9.84092 -8.73723 -7.89383 -5.35583 1.22563 1.48237 1.49884 1.58340 1.63653 2.48653 2.69893 3.09808 3.24367 3.41143 3.46567 3.51884 3.62621 3.86227 3.88240 3.97764 4.18902 4.27747 4.36224 4.39074 4.44928 4.49808 4.55376 4.62522 4.65922 4.73315 4.74916 4.90233 4.94104 5.04053 5.04513 5.10041 5.14311 5.15955 5.26022 5.35192 5.50398 5.62782 6.27417 6.29509 6.39614 6.80265 7.06777 7.75643 8.30161 9.16956 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003995 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.768015 B = 7007.598070 C = 7451.454523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.091 3.909 4 H 0.136 0.864 5 F -0.200 7.200 6 C 0.499 3.501 7 O -0.571 6.571 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.136 4.136 11 C 0.094 3.906 12 C 0.125 3.875 13 C 0.174 3.826 14 N -0.608 5.608 15 C -0.257 4.257 16 H 0.076 0.924 17 C -0.049 4.049 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.267 1.267 23 C 0.102 3.898 24 C 0.053 3.947 25 O -0.381 6.381 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.072 0.928 38 H -0.009 1.009 39 H 0.250 0.750 40 H 0.011 0.989 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.096 -6.724 -0.986 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.052 3.948 4 H 0.153 0.847 5 F -0.181 7.181 6 C 0.287 3.713 7 O -0.450 6.450 8 N -0.336 5.336 9 C -0.021 4.021 10 C -0.174 4.174 11 C 0.052 3.948 12 C 0.001 3.999 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.387 4.387 16 H 0.094 0.906 17 C -0.244 4.244 18 N -0.584 5.584 19 Si 0.795 3.205 20 H -0.208 1.208 21 H -0.228 1.228 22 H -0.192 1.192 23 C -0.024 4.024 24 C -0.024 4.024 25 O -0.301 6.301 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.009 0.991 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.727 -7.259 -0.432 19.160 hybrid contribution 1.248 1.254 0.251 1.787 sum -16.479 -6.005 -0.181 17.540 Atomic orbital electron populations 1.21756 0.91971 1.03599 1.03114 1.22016 0.98929 0.92306 1.04536 1.21818 0.88995 0.97806 0.86138 0.84659 1.92854 1.91777 1.84228 1.49231 1.21357 0.91653 0.79353 0.78949 1.90698 1.67484 1.41186 1.45659 1.48781 1.07710 1.36750 1.40350 1.22396 0.95569 0.91068 0.93106 1.22931 0.94296 0.98139 1.02072 1.22340 0.96444 0.88602 0.87392 1.22005 0.81710 1.01391 0.94767 1.20855 0.90905 0.96267 0.87232 1.44329 1.81326 1.06771 1.00832 1.19528 1.28718 0.87511 1.02906 0.90592 1.25769 0.97072 1.02497 0.99086 1.70183 1.35194 1.35276 1.17746 0.85271 0.76469 0.80623 0.78119 1.20837 1.22823 1.19178 1.21802 0.95796 0.91726 0.93028 1.23191 0.96838 0.99589 0.82798 1.87655 1.93903 1.33233 1.15264 0.92391 0.90560 0.90580 0.89087 0.91384 0.88748 0.88109 0.88339 0.90632 0.91227 0.90242 0.90993 0.99126 0.94098 0.97090 0.90620 0.86421 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.83 71.98 0.71 -1.12 16 2 C -0.14 -2.55 5.41 30.59 0.17 -2.38 16 3 C 0.09 1.94 3.54 29.85 0.11 2.05 16 4 H 0.14 1.90 6.68 -2.39 -0.02 1.88 16 5 F -0.20 -5.00 16.75 44.97 0.75 -4.24 16 6 C 0.50 15.11 7.19 87.66 0.63 15.74 16 7 O -0.57 -22.09 16.89 -3.02 -0.05 -22.14 16 8 N -0.60 -17.79 3.34 -811.80 -2.71 -20.50 16 9 C 0.10 2.25 5.95 86.76 0.52 2.77 16 10 C -0.14 -4.02 5.87 31.56 0.19 -3.83 16 11 C 0.09 3.41 0.84 -10.17 -0.01 3.40 16 12 C 0.12 4.41 6.10 86.49 0.53 4.94 16 13 C 0.17 8.10 4.07 86.01 0.35 8.45 16 14 N -0.61 -28.76 2.98 -698.86 -2.08 -30.85 16 15 C -0.26 -13.18 9.66 84.03 0.81 -12.37 16 16 H 0.08 3.73 7.88 -2.91 -0.02 3.71 16 17 C -0.05 -2.60 4.96 84.86 0.42 -2.18 16 18 N -0.94 -53.79 11.12 21.65 0.24 -53.55 16 19 Si 0.97 42.73 29.59 68.60 2.03 44.76 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C 0.10 3.93 6.71 86.35 0.58 4.51 16 24 C 0.05 1.61 6.78 72.08 0.49 2.09 16 25 O -0.38 -13.43 10.28 -148.95 -1.53 -14.96 16 26 H 0.06 0.78 7.94 -2.39 -0.02 0.76 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.69 7.82 -2.39 -0.02 1.67 16 33 H 0.10 2.71 6.07 -2.38 -0.01 2.70 16 34 H 0.07 2.45 7.83 -2.39 -0.02 2.43 16 35 H 0.07 2.67 8.06 -2.39 -0.02 2.65 16 36 H 0.08 2.92 7.99 -2.39 -0.02 2.90 16 37 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 38 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 39 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 2.69 7.96 -2.39 -0.02 2.67 16 42 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.06 1.78 6.22 -2.39 -0.01 1.77 16 Total: -1.00 -68.53 342.96 3.13 -65.41 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.00 Total: 14.01 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 5.48 Total: 22.06 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.55 Total: -104.90 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.58 Total: -37.10 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.75 Total: -4.24 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.53 3.13 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972503095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.248 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds