Wall clock time and date at job start Tue Mar 31 2020 04:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99927 * 2 1 4 4 H 1.48491 * 109.47227 * 90.26825 * 3 2 1 5 5 H 1.48501 * 109.46962 * 330.26952 * 3 2 1 6 6 H 1.48496 * 109.47142 * 210.27180 * 3 2 1 7 7 C 1.38815 * 120.00602 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99450 * 22.07516 * 7 2 1 9 9 N 1.36932 * 120.00462 * 202.07379 * 7 2 1 10 10 C 1.43461 * 118.94007 * 206.47432 * 9 7 2 11 11 C 1.53246 * 108.26147 * 273.77375 * 10 9 7 12 12 C 1.47136 * 111.81497 * 281.68274 * 11 10 9 13 13 N 1.48209 * 110.34496 * 58.22446 * 12 11 10 14 14 C 1.34783 * 119.97178 * 102.50729 * 13 12 11 15 15 O 1.21281 * 119.99687 * 2.43246 * 14 13 12 16 16 C 1.50696 * 120.00034 * 182.42812 * 14 13 12 17 17 F 1.39904 * 109.54441 * 42.82133 * 16 14 13 18 18 C 1.53179 * 109.54546 * 282.64248 * 16 14 13 19 19 C 1.53107 * 109.15611 * 183.24344 * 18 16 14 20 20 O 1.42897 * 109.48989 * 57.47375 * 19 18 16 21 21 C 1.42901 * 114.09612 * 298.89058 * 20 19 18 22 22 C 1.53088 * 109.41917 * 61.15730 * 21 20 19 23 23 C 1.43621 * 120.06008 * 282.48229 * 13 12 11 24 24 C 1.48858 * 118.93690 * 26.73637 * 9 7 2 25 25 H 0.97004 * 119.99773 * 185.08811 * 1 2 3 26 26 H 1.08996 * 109.76667 * 33.24325 * 10 9 7 27 27 H 1.09004 * 109.76350 * 154.01715 * 10 9 7 28 28 H 1.08999 * 109.07345 * 161.04008 * 11 10 9 29 29 H 1.09006 * 108.89889 * 42.20661 * 11 10 9 30 30 H 1.09000 * 109.32358 * 297.95862 * 12 11 10 31 31 H 1.08997 * 109.32664 * 178.49482 * 12 11 10 32 32 H 1.08998 * 109.52096 * 303.05996 * 18 16 14 33 33 H 1.08994 * 109.52172 * 63.24638 * 18 16 14 34 34 H 1.09006 * 109.40286 * 297.49105 * 19 18 16 35 35 H 1.09006 * 109.49049 * 177.51158 * 19 18 16 36 36 H 1.09001 * 109.47956 * 301.17242 * 21 20 19 37 37 H 1.09008 * 109.48876 * 181.14592 * 21 20 19 38 38 H 1.08997 * 109.52443 * 182.48403 * 22 21 20 39 39 H 1.08998 * 109.52288 * 62.29237 * 22 21 20 40 40 H 1.08998 * 108.87405 * 329.89688 * 23 13 12 41 41 H 1.08993 * 108.87919 * 211.44486 * 23 13 12 42 42 H 1.09000 * 109.48232 * 260.60398 * 24 9 7 43 43 H 1.08993 * 109.48303 * 20.63896 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5033 2.0432 1.4000 5 1 1.4447 2.6543 -0.6943 6 1 3.5448 1.4419 -0.7058 7 6 2.0103 -1.2021 -0.0005 8 1 1.5297 -2.1030 -0.3525 9 7 3.3044 -1.2457 0.4451 10 6 4.1783 -2.2655 -0.0593 11 6 3.9972 -3.5213 0.8001 12 6 4.7118 -3.4144 2.0819 13 7 4.2372 -2.2322 2.8393 14 6 3.3830 -2.3911 3.8697 15 8 3.0376 -3.5044 4.2047 16 6 2.8574 -1.1856 4.6055 17 9 2.5146 -0.1886 3.6858 18 6 3.9345 -0.6563 5.5573 19 6 3.3643 0.5173 6.3584 20 8 2.1986 0.0900 7.0659 21 6 1.1403 -0.3698 6.2228 22 6 1.6203 -1.5804 5.4180 23 6 4.6872 -0.9174 2.4767 24 6 3.7574 -0.2370 1.4417 25 1 -0.4850 -0.8368 0.0745 26 1 3.9212 -2.4927 -1.0939 27 1 5.2126 -1.9262 -0.0018 28 1 4.3759 -4.3848 0.2534 29 1 2.9346 -3.6643 0.9969 30 1 5.7805 -3.3158 1.8918 31 1 4.5342 -4.3147 2.6700 32 1 4.2379 -1.4491 6.2410 33 1 4.7969 -0.3211 4.9812 34 1 3.1001 1.3263 5.6773 35 1 4.1119 0.8700 7.0690 36 1 0.8470 0.4276 5.5400 37 1 0.2856 -0.6564 6.8356 38 1 0.8292 -1.9054 4.7422 39 1 1.8756 -2.3924 6.0987 40 1 5.6896 -0.9916 2.0550 41 1 4.7287 -0.2991 3.3734 42 1 4.3011 0.5586 0.9323 43 1 2.8913 0.1837 1.9525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981295507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:37 Heat of formation + Delta-G solvation = -83.673623 kcal Electronic energy + Delta-G solvation = -27819.536886 eV Core-core repulsion = 24008.787340 eV Total energy + Delta-G solvation = -3810.749546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.88751 -39.98682 -38.75740 -37.27774 -34.47267 -33.39834 -32.55089 -31.40213 -31.27601 -27.93834 -26.43871 -25.27971 -23.91807 -23.16013 -22.57269 -20.47418 -19.80338 -19.03654 -17.60624 -16.98130 -16.73790 -16.38642 -16.04182 -15.47801 -15.34324 -15.12615 -14.88750 -14.52832 -13.92622 -13.74947 -13.41004 -13.31230 -12.94953 -12.80923 -12.58509 -12.44091 -12.26706 -12.16474 -12.05701 -11.64042 -11.57590 -11.26839 -10.84537 -10.76300 -10.49532 -10.44054 -10.28554 -9.88785 -9.82866 -9.74347 -9.26200 -9.12545 -8.50766 -8.29158 -6.92005 -6.27899 -3.27232 2.64030 3.15233 3.42368 3.53731 3.69414 3.76143 4.23188 4.31010 4.50590 4.63583 4.71816 4.79342 4.88885 5.14100 5.17718 5.28534 5.36602 5.39221 5.45619 5.50108 5.55328 5.56765 5.64772 5.71684 5.75881 5.80932 5.89957 6.00367 6.04419 6.15780 6.25177 6.29776 6.45812 6.67522 6.75064 6.84315 7.04506 7.06550 7.62477 8.10142 8.27580 8.50693 9.07638 9.70316 10.18367 11.16270 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.008067 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.968091 B = 3470.069849 C = 4423.684503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 1.052 2.948 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.288 1.288 7 C -0.347 4.347 8 H 0.063 0.937 9 N -0.597 5.597 10 C 0.161 3.839 11 C -0.170 4.170 12 C 0.128 3.872 13 N -0.574 5.574 14 C 0.511 3.489 15 O -0.538 6.538 16 C 0.106 3.894 17 F -0.172 7.172 18 C -0.177 4.177 19 C 0.062 3.938 20 O -0.381 6.381 21 C 0.060 3.940 22 C -0.158 4.158 23 C 0.085 3.915 24 C 0.090 3.910 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.764 -0.668 10.971 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.883 3.117 4 H -0.220 1.220 5 H -0.229 1.229 6 H -0.215 1.215 7 C -0.475 4.475 8 H 0.081 0.919 9 N -0.320 5.320 10 C 0.033 3.967 11 C -0.211 4.211 12 C 0.007 3.993 13 N -0.304 5.304 14 C 0.296 3.704 15 O -0.415 6.415 16 C 0.085 3.915 17 F -0.153 7.153 18 C -0.215 4.215 19 C -0.015 4.015 20 O -0.300 6.300 21 C -0.017 4.017 22 C -0.196 4.196 23 C -0.040 4.040 24 C -0.035 4.035 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.395 0.398 11.208 15.292 hybrid contribution 0.236 -1.668 -0.567 1.778 sum 10.632 -1.270 10.641 15.095 Atomic orbital electron populations 1.70848 1.06398 1.29473 1.48899 1.26098 0.96367 1.00796 0.97512 0.84023 0.74714 0.76846 0.76101 1.21984 1.22886 1.21524 1.20172 0.88048 0.95735 1.43558 0.91880 1.43904 1.09996 1.32991 1.45084 1.20222 0.92820 0.88040 0.95606 1.21753 1.02179 1.00658 0.96506 1.20642 0.97356 0.88079 0.93231 1.47334 1.45002 1.07873 1.30204 1.20567 0.78754 0.90249 0.80810 1.90655 1.58202 1.25582 1.67101 1.21080 0.97012 0.85525 0.87920 1.92903 1.93555 1.62126 1.66693 1.22912 0.98199 1.01286 0.99087 1.22552 0.88001 0.94790 0.96119 1.87911 1.24701 1.83703 1.33656 1.22648 0.89923 0.95164 0.93959 1.22554 0.96920 1.00166 1.00006 1.22082 0.98494 0.83673 0.99771 1.23067 0.98730 0.91788 0.89933 0.92727 0.93047 0.94809 0.92243 0.91222 0.91697 0.90187 0.88801 0.88859 0.91983 0.88046 0.91916 0.87910 0.88891 0.88499 0.91328 0.90737 0.95170 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.01 -0.18 5.14 -17.43 -0.09 -0.27 16 3 Si 1.05 26.25 24.41 -169.99 -4.15 22.10 16 4 H -0.29 -6.81 6.61 56.52 0.37 -6.44 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.29 -6.84 6.73 56.52 0.38 -6.46 16 7 C -0.35 -9.73 9.53 -15.06 -0.14 -9.88 16 8 H 0.06 1.93 8.06 -52.49 -0.42 1.51 16 9 N -0.60 -14.05 2.31 -172.34 -0.40 -14.45 16 10 C 0.16 3.18 5.59 -5.52 -0.03 3.15 16 11 C -0.17 -3.05 5.63 -29.42 -0.17 -3.22 16 12 C 0.13 2.06 5.71 -5.92 -0.03 2.03 16 13 N -0.57 -10.05 2.46 -176.66 -0.43 -10.48 16 14 C 0.51 9.47 6.72 -10.98 -0.07 9.40 16 15 O -0.54 -11.15 15.38 5.56 0.09 -11.06 16 16 C 0.11 1.73 0.73 -91.59 -0.07 1.67 16 17 F -0.17 -3.31 11.00 2.25 0.02 -3.29 16 18 C -0.18 -2.18 4.95 -26.58 -0.13 -2.32 16 19 C 0.06 0.71 6.72 37.21 0.25 0.96 16 20 O -0.38 -5.08 10.77 -35.23 -0.38 -5.46 16 21 C 0.06 0.80 6.72 37.20 0.25 1.05 16 22 C -0.16 -2.43 4.70 -26.59 -0.12 -2.56 16 23 C 0.09 1.41 4.74 -4.58 -0.02 1.38 16 24 C 0.09 1.91 4.10 -1.74 -0.01 1.90 16 25 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 26 H 0.05 1.05 8.02 -51.93 -0.42 0.63 16 27 H 0.03 0.58 7.58 -51.93 -0.39 0.19 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 30 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 31 H 0.08 1.31 7.10 -51.93 -0.37 0.95 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.02 5.79 -51.93 -0.30 0.72 16 34 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 37 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.10 1.44 7.82 -51.93 -0.41 1.03 16 40 H 0.07 0.97 7.73 -51.93 -0.40 0.56 16 41 H 0.07 1.07 4.03 -51.93 -0.21 0.86 16 42 H 0.03 0.63 5.93 -51.93 -0.31 0.32 16 43 H 0.10 2.39 2.78 -51.93 -0.14 2.24 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -33.39 317.56 -6.43 -39.83 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.34 Total: 2.53 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.39 Total: 3.30 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.07 Total: -52.74 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.29 Total: -16.52 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.02 Total: -3.29 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.15 Total: 22.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.39 -6.43 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981295507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.848 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds