Wall clock time and date at job start Tue Mar 31 2020 04:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99927 * 2 1 4 4 H 1.48491 * 109.47227 * 90.26825 * 3 2 1 5 5 H 1.48501 * 109.46962 * 330.26952 * 3 2 1 6 6 H 1.48496 * 109.47142 * 210.27180 * 3 2 1 7 7 C 1.38815 * 120.00602 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99450 * 22.07516 * 7 2 1 9 9 N 1.36932 * 120.00462 * 202.07379 * 7 2 1 10 10 C 1.43461 * 118.94007 * 206.47432 * 9 7 2 11 11 C 1.53246 * 108.26147 * 273.77375 * 10 9 7 12 12 C 1.47136 * 111.81497 * 281.68274 * 11 10 9 13 13 N 1.48209 * 110.34496 * 58.22446 * 12 11 10 14 14 C 1.34783 * 119.97178 * 102.50729 * 13 12 11 15 15 O 1.21281 * 119.99687 * 2.43246 * 14 13 12 16 16 C 1.50696 * 120.00034 * 182.42812 * 14 13 12 17 17 F 1.39904 * 109.54441 * 42.82133 * 16 14 13 18 18 C 1.53179 * 109.54546 * 282.64248 * 16 14 13 19 19 C 1.53107 * 109.15611 * 183.24344 * 18 16 14 20 20 O 1.42897 * 109.48989 * 57.47375 * 19 18 16 21 21 C 1.42901 * 114.09612 * 298.89058 * 20 19 18 22 22 C 1.53088 * 109.41917 * 61.15730 * 21 20 19 23 23 C 1.43621 * 120.06008 * 282.48229 * 13 12 11 24 24 C 1.48858 * 118.93690 * 26.73637 * 9 7 2 25 25 H 0.97004 * 119.99773 * 185.08811 * 1 2 3 26 26 H 1.08996 * 109.76667 * 33.24325 * 10 9 7 27 27 H 1.09004 * 109.76350 * 154.01715 * 10 9 7 28 28 H 1.08999 * 109.07345 * 161.04008 * 11 10 9 29 29 H 1.09006 * 108.89889 * 42.20661 * 11 10 9 30 30 H 1.09000 * 109.32358 * 297.95862 * 12 11 10 31 31 H 1.08997 * 109.32664 * 178.49482 * 12 11 10 32 32 H 1.08998 * 109.52096 * 303.05996 * 18 16 14 33 33 H 1.08994 * 109.52172 * 63.24638 * 18 16 14 34 34 H 1.09006 * 109.40286 * 297.49105 * 19 18 16 35 35 H 1.09006 * 109.49049 * 177.51158 * 19 18 16 36 36 H 1.09001 * 109.47956 * 301.17242 * 21 20 19 37 37 H 1.09008 * 109.48876 * 181.14592 * 21 20 19 38 38 H 1.08997 * 109.52443 * 182.48403 * 22 21 20 39 39 H 1.08998 * 109.52288 * 62.29237 * 22 21 20 40 40 H 1.08998 * 108.87405 * 329.89688 * 23 13 12 41 41 H 1.08993 * 108.87919 * 211.44486 * 23 13 12 42 42 H 1.09000 * 109.48232 * 260.60398 * 24 9 7 43 43 H 1.08993 * 109.48303 * 20.63896 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5033 2.0432 1.4000 5 1 1.4447 2.6543 -0.6943 6 1 3.5448 1.4419 -0.7058 7 6 2.0103 -1.2021 -0.0005 8 1 1.5297 -2.1030 -0.3525 9 7 3.3044 -1.2457 0.4451 10 6 4.1783 -2.2655 -0.0593 11 6 3.9972 -3.5213 0.8001 12 6 4.7118 -3.4144 2.0819 13 7 4.2372 -2.2322 2.8393 14 6 3.3830 -2.3911 3.8697 15 8 3.0376 -3.5044 4.2047 16 6 2.8574 -1.1856 4.6055 17 9 2.5146 -0.1886 3.6858 18 6 3.9345 -0.6563 5.5573 19 6 3.3643 0.5173 6.3584 20 8 2.1986 0.0900 7.0659 21 6 1.1403 -0.3698 6.2228 22 6 1.6203 -1.5804 5.4180 23 6 4.6872 -0.9174 2.4767 24 6 3.7574 -0.2370 1.4417 25 1 -0.4850 -0.8368 0.0745 26 1 3.9212 -2.4927 -1.0939 27 1 5.2126 -1.9262 -0.0018 28 1 4.3759 -4.3848 0.2534 29 1 2.9346 -3.6643 0.9969 30 1 5.7805 -3.3158 1.8918 31 1 4.5342 -4.3147 2.6700 32 1 4.2379 -1.4491 6.2410 33 1 4.7969 -0.3211 4.9812 34 1 3.1001 1.3263 5.6773 35 1 4.1119 0.8700 7.0690 36 1 0.8470 0.4276 5.5400 37 1 0.2856 -0.6564 6.8356 38 1 0.8292 -1.9054 4.7422 39 1 1.8756 -2.3924 6.0987 40 1 5.6896 -0.9916 2.0550 41 1 4.7287 -0.2991 3.3734 42 1 4.3011 0.5586 0.9323 43 1 2.8913 0.1837 1.9525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981295507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:36 Heat of formation + Delta-G solvation = -107.793393 kcal Electronic energy + Delta-G solvation = -27820.582798 eV Core-core repulsion = 24008.787340 eV Total energy + Delta-G solvation = -3811.795458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.26849 -41.37228 -39.87603 -38.81734 -36.17368 -34.75039 -33.95171 -33.36402 -32.32602 -29.50516 -27.93726 -26.63425 -25.15090 -24.77703 -24.00711 -21.82077 -21.39844 -20.42826 -19.37373 -18.57693 -18.07302 -17.66922 -17.08112 -16.91796 -16.75761 -16.52759 -16.19006 -15.93136 -15.51849 -15.24420 -15.02272 -14.85295 -14.48979 -14.23800 -13.80258 -13.69625 -13.64227 -13.54213 -13.53467 -13.28431 -12.99018 -12.55588 -12.41375 -11.99521 -11.96389 -11.84725 -11.64413 -11.56272 -11.49454 -11.24546 -11.03025 -10.65244 -10.48939 -9.74100 -8.93088 -8.55695 -5.49301 1.22295 1.42366 1.55819 1.72953 1.86005 2.58200 2.78143 2.99291 3.07724 3.17087 3.30063 3.46305 3.55152 3.75705 3.90870 4.03970 4.11582 4.11824 4.23282 4.28796 4.36264 4.39292 4.45684 4.53759 4.56185 4.64665 4.68144 4.76007 4.84787 4.86926 4.90875 4.94124 4.98152 5.13644 5.17347 5.33689 5.57992 5.80190 6.07499 6.23473 6.29749 6.87854 6.94378 7.71851 8.04895 8.85521 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.008067 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.968091 B = 3470.069849 C = 4423.684503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.064 4.064 3 Si 1.097 2.903 4 H -0.265 1.265 5 H -0.314 1.314 6 H -0.262 1.262 7 C -0.330 4.330 8 H 0.015 0.985 9 N -0.610 5.610 10 C 0.155 3.845 11 C -0.157 4.157 12 C 0.125 3.875 13 N -0.576 5.576 14 C 0.499 3.501 15 O -0.571 6.571 16 C 0.097 3.903 17 F -0.190 7.190 18 C -0.166 4.166 19 C 0.058 3.942 20 O -0.386 6.386 21 C 0.067 3.933 22 C -0.158 4.158 23 C 0.088 3.912 24 C 0.079 3.921 25 H 0.243 0.757 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.011 0.989 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.138 0.862 36 H 0.051 0.949 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.960 0.619 12.427 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.923 3.077 4 H -0.191 1.191 5 H -0.243 1.243 6 H -0.187 1.187 7 C -0.460 4.460 8 H 0.033 0.967 9 N -0.334 5.334 10 C 0.029 3.971 11 C -0.197 4.197 12 C 0.004 3.996 13 N -0.305 5.305 14 C 0.286 3.714 15 O -0.451 6.451 16 C 0.076 3.924 17 F -0.171 7.171 18 C -0.204 4.204 19 C -0.019 4.019 20 O -0.305 6.305 21 C -0.010 4.010 22 C -0.196 4.196 23 C -0.037 4.037 24 C -0.046 4.046 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.030 0.970 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.654 1.665 12.671 19.444 hybrid contribution -1.083 -2.228 -1.073 2.700 sum 13.571 -0.563 11.597 17.860 Atomic orbital electron populations 1.70980 1.07819 1.28205 1.52791 1.27375 0.96226 1.04564 0.97616 0.83457 0.74290 0.72311 0.77670 1.19094 1.24280 1.18704 1.19967 0.90185 0.93795 1.42005 0.96680 1.43999 1.08694 1.34389 1.46305 1.20420 0.94192 0.87618 0.94911 1.21597 0.98992 1.01168 0.97980 1.20792 0.99572 0.87693 0.91535 1.47522 1.44509 1.08816 1.29688 1.21089 0.78543 0.90535 0.81260 1.90630 1.59244 1.26983 1.68211 1.21330 0.98510 0.84551 0.88011 1.92869 1.93869 1.62698 1.67652 1.22934 0.97223 1.01788 0.98448 1.22809 0.88022 0.94137 0.96882 1.87912 1.25157 1.83571 1.33828 1.22592 0.90754 0.93744 0.93897 1.22536 0.96093 1.01311 0.99667 1.22136 0.98793 0.83008 0.99727 1.23189 0.99019 0.91925 0.90422 0.94864 0.94629 0.90487 0.89218 0.96977 0.86891 0.90830 0.87830 0.86691 0.92384 0.84450 0.93100 0.85969 0.91962 0.88164 0.87221 0.88159 0.93579 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.61 13.70 21.65 0.30 -62.31 16 2 C -0.06 -3.81 5.14 84.86 0.44 -3.37 16 3 Si 1.10 52.74 24.41 68.60 1.67 54.41 16 4 H -0.27 -11.50 6.61 99.48 0.66 -10.85 16 5 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 6 H -0.26 -11.33 6.73 99.48 0.67 -10.66 16 7 C -0.33 -19.19 9.53 84.03 0.80 -18.39 16 8 H 0.02 1.01 8.06 -2.91 -0.02 0.98 16 9 N -0.61 -28.15 2.31 -699.17 -1.62 -29.77 16 10 C 0.16 5.80 5.59 87.02 0.49 6.29 16 11 C -0.16 -5.43 5.63 28.85 0.16 -5.27 16 12 C 0.12 3.64 5.71 84.23 0.48 4.12 16 13 N -0.58 -18.65 2.46 -831.22 -2.04 -20.69 16 14 C 0.50 18.09 6.72 87.65 0.59 18.68 16 15 O -0.57 -23.90 15.38 -3.03 -0.05 -23.95 16 16 C 0.10 3.07 0.73 -11.42 -0.01 3.06 16 17 F -0.19 -7.17 11.00 44.97 0.49 -6.68 16 18 C -0.17 -3.54 4.95 30.69 0.15 -3.39 16 19 C 0.06 1.13 6.72 72.02 0.48 1.61 16 20 O -0.39 -9.39 10.77 -148.98 -1.60 -10.99 16 21 C 0.07 1.75 6.72 72.01 0.48 2.23 16 22 C -0.16 -4.91 4.70 30.68 0.14 -4.77 16 23 C 0.09 2.50 4.74 87.56 0.42 2.92 16 24 C 0.08 3.10 4.10 86.57 0.36 3.46 16 25 H 0.24 16.31 8.73 -92.71 -0.81 15.50 16 26 H 0.04 1.42 8.02 -2.39 -0.02 1.40 16 27 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.01 0.53 7.91 -2.38 -0.02 0.51 16 30 H 0.11 2.30 8.05 -2.39 -0.02 2.28 16 31 H 0.07 2.28 7.10 -2.39 -0.02 2.27 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.12 1.93 5.79 -2.39 -0.01 1.92 16 34 H 0.06 1.20 7.93 -2.38 -0.02 1.18 16 35 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 37 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.10 3.00 7.82 -2.39 -0.02 2.98 16 40 H 0.11 2.30 7.73 -2.39 -0.02 2.28 16 41 H 0.10 2.36 4.03 -2.39 -0.01 2.35 16 42 H 0.05 1.69 5.93 -2.39 -0.01 1.68 16 43 H 0.08 3.41 2.78 -2.39 -0.01 3.40 16 Total: -1.00 -78.76 317.56 3.03 -75.73 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.89 Total: 17.07 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.98 Total: 7.17 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -3.36 Total: -112.77 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.65 Total: -34.94 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.49 Total: -6.68 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 1.67 Total: 54.41 kcal Total: -78.76 3.03 -75.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981295507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.066 kcal (2) G-P(sol) polarization free energy of solvation -78.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds