Wall clock time and date at job start Tue Mar 31 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38903 * 119.74030 * 2 1 4 4 C 1.36681 * 120.89282 * 179.97438 * 3 2 1 5 5 C 1.39116 * 119.78967 * 0.02562 * 4 3 2 6 6 N 1.37050 * 134.72653 * 180.02562 * 5 4 3 7 7 H 0.96994 * 124.37553 * 359.97356 * 6 5 4 8 8 N 1.28384 * 111.25542 * 179.97438 * 6 5 4 9 9 C 1.31573 * 111.96696 * 359.97438 * 8 6 5 10 10 C 1.47387 * 126.82470 * 180.26454 * 9 8 6 11 11 O 1.21612 * 120.00532 * 179.68978 * 10 9 8 12 12 N 1.34781 * 120.00096 * 359.68390 * 10 9 8 13 13 C 1.46499 * 120.00221 * 180.02562 * 12 10 9 14 14 C 1.53946 * 113.74166 * 253.73965 * 13 12 10 15 15 N 1.47804 * 86.03932 * 222.08404 * 14 13 12 16 16 C 1.36935 * 134.46128 * 204.64623 * 15 14 13 17 17 H 1.08003 * 120.00609 * 179.86939 * 16 15 14 18 18 C 1.38816 * 119.99717 * 359.86543 * 16 15 14 19 19 N 1.31615 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47358 * 89.99689 * 20 18 16 22 22 H 1.48500 * 109.46911 * 210.00077 * 20 18 16 23 23 H 1.48505 * 109.46725 * 329.99558 * 20 18 16 24 24 C 1.47589 * 91.05078 * 24.54996 * 15 14 13 25 25 C 1.40864 * 119.22374 * 359.97438 * 5 4 3 26 26 C 1.36720 * 119.73919 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46941 * 89.99983 * 1 2 3 28 28 H 1.08996 * 109.47202 * 210.00011 * 1 2 3 29 29 H 1.09004 * 109.46726 * 330.00132 * 1 2 3 30 30 H 1.08003 * 119.54897 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.10434 * 180.02562 * 4 3 2 32 32 H 0.96994 * 119.99633 * 0.02562 * 12 10 9 33 33 H 1.08999 * 112.94828 * 25.33317 * 13 12 10 34 34 H 1.08996 * 113.77054 * 336.35595 * 14 13 12 35 35 H 1.09001 * 113.76872 * 107.74475 * 14 13 12 36 36 H 0.96998 * 120.00373 * 179.97438 * 19 18 16 37 37 H 1.09004 * 113.76750 * 221.15368 * 24 15 14 38 38 H 1.09002 * 113.76747 * 89.75151 * 24 15 14 39 39 H 1.08001 * 120.24369 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2061 0.0000 4 6 3.5626 1.2336 0.0005 5 6 4.2779 0.0404 0.0005 6 7 5.6089 -0.2862 0.0014 7 1 6.3315 0.3608 0.0019 8 7 5.7758 -1.5591 0.0015 9 6 4.6300 -2.2058 0.0013 10 6 4.4405 -3.6674 0.0067 11 8 3.3179 -4.1351 0.0115 12 7 5.5114 -4.4858 0.0063 13 6 5.3230 -5.9386 0.0111 14 6 5.6383 -6.6000 1.3651 15 7 6.3053 -7.6577 0.5770 16 6 6.5975 -8.9774 0.7967 17 1 7.1063 -9.5517 0.0366 18 6 6.2397 -9.5770 1.9964 19 7 5.6193 -8.8773 2.9226 20 14 6.6389 -11.3771 2.2965 21 1 7.9789 -11.4886 2.9266 22 1 5.6171 -11.9670 3.1982 23 1 6.6378 -12.1065 1.0029 24 6 6.5276 -6.7216 -0.5421 25 6 3.5771 -1.1816 0.0005 26 6 2.1852 -1.1871 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6445 2.1346 -0.0004 31 1 4.0854 2.1786 0.0009 32 1 6.4067 -4.1128 0.0027 33 1 4.3676 -6.2447 -0.4148 34 1 6.3195 -6.0211 1.9887 35 1 4.7544 -6.9426 1.9031 36 1 5.3690 -9.2964 3.7608 37 1 6.3523 -7.1612 -1.5240 38 1 7.4706 -6.1785 -0.4799 39 1 1.6449 -2.1223 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030605809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:22 Heat of formation + Delta-G solvation = 106.146652 kcal Electronic energy + Delta-G solvation = -23043.604825 eV Core-core repulsion = 19568.315385 eV Total energy + Delta-G solvation = -3475.289440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59182 -39.29644 -38.31476 -37.40062 -33.54850 -32.82504 -31.99856 -31.71023 -30.03990 -27.53467 -26.99570 -24.79552 -24.47140 -23.29570 -22.42495 -21.69563 -19.99004 -19.46925 -18.34567 -17.40293 -16.74917 -16.17837 -15.92579 -15.66741 -15.39547 -14.90511 -14.30030 -14.17841 -14.10095 -13.79616 -13.72587 -13.64102 -12.65245 -12.39029 -12.11649 -11.87845 -11.82489 -11.43674 -11.42781 -11.39026 -11.02862 -10.87426 -10.75535 -10.42810 -10.22652 -10.05518 -9.74906 -9.50905 -8.87616 -8.78509 -8.46044 -8.13810 -6.89479 -5.74724 -3.08731 0.67917 1.15760 1.85332 2.52388 3.34466 3.37064 3.42573 3.46972 3.48643 3.68831 4.23369 4.32522 4.47723 4.62951 4.68680 4.89795 5.13299 5.18930 5.24542 5.39120 5.45828 5.47475 5.51353 5.60753 5.81400 5.83523 5.99061 6.04384 6.22204 6.25665 6.41782 6.44690 6.58653 6.62058 6.77356 6.82392 7.26731 7.38171 7.55955 7.62971 7.94369 7.98862 8.51089 9.05124 9.71469 10.58209 11.41981 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.002826 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.284295 B = 9904.100331 C =10456.019499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.082 4.082 4 C -0.119 4.119 5 C 0.059 3.941 6 N -0.418 5.418 7 H 0.446 0.554 8 N -0.208 5.208 9 C 0.014 3.986 10 C 0.600 3.400 11 O -0.531 6.531 12 N -0.699 5.699 13 C 0.091 3.909 14 C 0.154 3.846 15 N -0.607 5.607 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.113 3.887 25 C -0.105 4.105 26 C -0.041 4.041 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.402 0.598 33 H 0.113 0.887 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.255 0.745 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 24.047 -6.938 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.112 4.112 3 C -0.103 4.103 4 C -0.141 4.141 5 C -0.054 4.054 6 N -0.137 5.137 7 H 0.290 0.710 8 N -0.038 5.038 9 C -0.158 4.158 10 C 0.384 3.616 11 O -0.405 6.405 12 N -0.349 5.349 13 C -0.013 4.013 14 C 0.028 3.972 15 N -0.334 5.334 16 C -0.352 4.352 17 H 0.100 0.900 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.014 4.014 25 C -0.112 4.112 26 C -0.061 4.061 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.237 0.763 33 H 0.131 0.869 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.400 23.154 -6.747 24.515 hybrid contribution 0.609 -0.111 0.353 0.713 sum -3.791 23.043 -6.395 24.212 Atomic orbital electron populations 1.20756 0.90630 1.02950 1.02390 1.19584 0.96528 0.92507 1.02608 1.20609 0.93037 0.97888 0.98757 1.19713 0.93795 0.94604 1.05943 1.19188 0.84942 0.96161 1.05136 1.42989 1.05949 1.04171 1.60564 0.70954 1.72914 1.26117 0.91440 1.13311 1.23002 0.88093 0.94730 1.09989 1.16679 0.85327 0.82570 0.77069 1.90799 1.23611 1.75590 1.50503 1.46010 1.08494 1.07506 1.72934 1.23994 1.00522 0.75567 1.01251 1.22721 0.96757 0.86297 0.91419 1.45719 1.67836 1.05374 1.14446 1.18982 1.32787 0.83164 1.00311 0.90036 1.24823 1.00864 0.98398 0.96276 1.69828 1.44313 1.35237 1.07073 0.86091 0.77491 0.84233 0.77749 1.21618 1.21574 1.20548 1.22874 0.94480 0.90481 0.93545 1.19412 0.94267 0.90589 1.06962 1.20315 0.91222 0.98793 0.95768 0.91203 0.91190 0.91615 0.85240 0.85490 0.76305 0.86864 0.95271 0.90360 0.93534 0.93108 0.94604 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.99 36.01 0.36 -0.45 16 2 C -0.11 -1.09 5.85 -104.93 -0.61 -1.71 16 3 C -0.08 -0.68 9.60 -39.90 -0.38 -1.06 16 4 C -0.12 -1.00 10.03 -39.82 -0.40 -1.40 16 5 C 0.06 0.65 7.38 -84.21 -0.62 0.03 16 6 N -0.42 -4.16 6.85 32.34 0.22 -3.93 16 7 H 0.45 2.60 8.96 -190.50 -1.71 0.89 16 8 N -0.21 -2.70 11.80 34.46 0.41 -2.30 16 9 C 0.01 0.21 7.32 -80.76 -0.59 -0.38 16 10 C 0.60 10.61 7.81 -12.53 -0.10 10.51 16 11 O -0.53 -10.85 16.02 5.27 0.08 -10.76 16 12 N -0.70 -11.89 5.37 -56.43 -0.30 -12.19 16 13 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 14 C 0.15 3.79 7.33 -2.84 -0.02 3.77 16 15 N -0.61 -15.86 3.70 -177.88 -0.66 -16.51 16 16 C -0.22 -6.39 10.70 -15.06 -0.16 -6.56 16 17 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.79 11.39 55.49 0.63 -27.16 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.11 2.32 8.69 -2.96 -0.03 2.29 16 25 C -0.11 -1.46 6.34 -105.05 -0.67 -2.13 16 26 C -0.04 -0.52 9.50 -39.78 -0.38 -0.90 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 31 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.40 5.99 8.45 -40.82 -0.34 5.65 16 33 H 0.11 2.42 7.51 -51.93 -0.39 2.03 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 2.16 7.16 -51.93 -0.37 1.79 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.14 1.89 7.65 -52.49 -0.40 1.49 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -34.56 337.13 -9.70 -44.26 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.14 Total: 2.89 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -4.00 Total: 3.25 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.30 Total: -62.10 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.56 -9.70 -44.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030605809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.411 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds